Rmu_sc0010190.1_g000004

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010190.1
OG0000188
Physical Location & Seq
Forward (+)
13088 .. 14119
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010190.1_g000004.1.cds

Sequence Viewer

Length: 1032 bp
atggcattgcaacttgtttcaaatttccaggaaaacattataatcatagtcatggaaaatgatatagaaagcacctgtacagagattgatactttggatagtgttacagaagattatgagtgcaaagctattgttgaggcattgaacactacagcaaagcttcgcagtgattcacaatggtctgctgagtggtgcattttcagagttcccaaagtgcttcagaggcataaacctgaggcatatagacctcatgttgtctcaatcggtccctttcaccgaggaggtgaacaatttcaacccatagaagatgtgaagcggtcgtatttacataaccttctctcagtcttgaacatgagtcagaaaacattgattcaaggcattaataatatctctgagtttgagaaacgtgctcgtgaatgttatgcagaaccactcgatcttaaccaggatgatttcatagaaatgatggtacttgatggttgcttcctaatagagctatttcgtaaacatttctattggtcatataagcaggtcttgaagaaagatctcatttcagatgaagaactaaatatcgacaaggaccctatattcaacatggatttcatgctccaatatattttccaagaccttatgctactagaaaatcagttaccttggtttgttctcgagtgtttatttggtctcaccttggaaaaacacctcagccattctcttaatgcaattgtgcttgttgctttcagctcacaaccatcactggcatgtaatgtggaggcctatcttggtcacagcaatgatgatgatggtgatgaaattttacacatacttgatctggtaagatctgcaacaactttcagatttaaaaattgtgagcccagctcagagatgaaattgcctcctcctgcaactactctctcaaaggcaggtattaaattcaaaaagagcactgatggtggcataatggacatggatttcaaagatggtgttgaaaattcaactcatgacctttacaatgttggaattataagttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

39.43

Weight (kDa)

4.79

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 41, 1022
Acc36I ACCTGC 2 cut(s) 520, 911
AciI CCGC 1 cut(s) 316
AcsI RAATTY 4 cut(s) 22, 810, 929, 988
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 79, 471
AjnI CCWGG 2 cut(s) 27, 444
AluBI AGCT 5 cut(s) 128, 160, 496, 741, 876
AluI AGCT 5 cut(s) 128, 160, 496, 741, 876
Alw21I GWGCWC 2 cut(s) 412, 944
Alw26I GTCTC 2 cut(s) 262, 686
Ama87I CYCGRG 1 cut(s) 665
AoxI GGCC 1 cut(s) 771
ApoI RAATTY 4 cut(s) 22, 810, 929, 988
AseI ATTAAT 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 266, 580
AsuHPI GGTGA 4 cut(s) 266, 296, 676, 815
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 2 cut(s) 266, 580
AxyI CCTNAGG 1 cut(s) 234
BanII GRGCYC 1 cut(s) 873
BauI CACGAG 1 cut(s) 411
Bbv12I GWGCWC 2 cut(s) 412, 944
BbvCI CCTCAGC 1 cut(s) 701
BccI CCATC 6 cut(s) 460, 470, 757, 794, 941, 971
BciT130I CCWGG 2 cut(s) 29, 446
BcoDI GTCTC 2 cut(s) 262, 686
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 150
BfuAI ACCTGC 2 cut(s) 520, 911
BglII AGATCT 2 cut(s) 544, 836
Bme1390I CCNGG 2 cut(s) 29, 446
Bme18I GGWCC 2 cut(s) 266, 580
BmeT110I CYCGRG 1 cut(s) 665
BmgT120I GGNCC 2 cut(s) 266, 580
BmiI GGNNCC 2 cut(s) 268, 582
BmrFI CCNGG 2 cut(s) 29, 446
BplI GAGNNNNNCTC 2 cut(s) 860, 892
Bpu10I CCTNAGC 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 3 cut(s) 277, 653, 687
Bse1I ACTGG 1 cut(s) 759
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 2 cut(s) 5, 796
BseBI CCWGG 2 cut(s) 29, 446
BseDI CCNNGG 3 cut(s) 277, 653, 687
BseGI GGATG 1 cut(s) 454
BseMI GCAATG 2 cut(s) 5, 796
BseMII CTCAG 6 cut(s) 177, 225, 354, 384, 715, 891
BseNI ACTGG 1 cut(s) 759
BseRI GAGGAG 2 cut(s) 294, 885
BseYI CCCAGC 1 cut(s) 872
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 773
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 2 cut(s) 412, 944
BsiHKCI CYCGRG 1 cut(s) 665
BslFI GGGAC 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 262, 686
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 773
Bso31I GGTCTC 1 cut(s) 686
BsoBI CYCGRG 1 cut(s) 665
Bsp1286I GDGCHC 3 cut(s) 412, 873, 944
Bsp1407I TGTACA 1 cut(s) 77
Bsp143I GATC 4 cut(s) 436, 544, 826, 836
BspACI CCGC 1 cut(s) 316
BspANI GGCC 1 cut(s) 773
BspCNI CTCAG 6 cut(s) 178, 226, 353, 385, 714, 890
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 2 cut(s) 268, 582
BspMI ACCTGC 2 cut(s) 520, 911
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 2 cut(s) 5, 796
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 1 cut(s) 759
BssECI CCNNGG 3 cut(s) 277, 653, 687
BssMI GATC 4 cut(s) 436, 544, 826, 836
BssSI CACGAG 1 cut(s) 411
BssT1I CCWWGG 2 cut(s) 653, 687
Bst2BI CACGAG 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 29, 446
BstAUI TGTACA 1 cut(s) 77
BstDEI CTNAG 6 cut(s) 186, 234, 340, 393, 701, 877
BstF5I GGATG 1 cut(s) 454
BstKTI GATC 4 cut(s) 439, 547, 829, 839
BstMAI GTCTC 2 cut(s) 262, 686
BstMBI GATC 4 cut(s) 436, 544, 826, 836
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 2 cut(s) 29, 446
BstNSI RCATGY 1 cut(s) 762
BstSCI CCNGG 2 cut(s) 27, 444
BstSFI CTRYAG 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 544, 836
BstYI RGATCY 2 cut(s) 544, 836
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 1 cut(s) 773
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 752, 942
BveI ACCTGC 2 cut(s) 520, 911
CciI TCATGA 1 cut(s) 997
Cfr13I GGNCC 2 cut(s) 266, 580
Csp6I GTAC 2 cut(s) 78, 470
CviAII CATG 8 cut(s) 52, 251, 352, 595, 604, 759, 964, 998
CviJI RGCY 8 cut(s) 128, 160, 496, 705, 741, 773, 871, 876
CviKI_1 RGCY 8 cut(s) 128, 160, 496, 705, 741, 773, 871, 876
CviQI GTAC 2 cut(s) 78, 470
DdeI CTNAG 6 cut(s) 186, 234, 340, 393, 701, 877
DpnI GATC 4 cut(s) 438, 546, 828, 838
DpnII GATC 4 cut(s) 436, 544, 826, 836
DraI TTTAAA 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 653, 687
Eco147I AGGCCT 1 cut(s) 773
Eco24I GRGCYC 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 686
Eco47I GGWCC 2 cut(s) 266, 580
Eco57I CTGAAG 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 665
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 27, 444
EcoT14I CCWWGG 2 cut(s) 653, 687
EcoT38I GRGCYC 1 cut(s) 873
ErhI CCWWGG 2 cut(s) 653, 687
FaeI CATG 8 cut(s) 55, 254, 355, 598, 607, 762, 967, 1001
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 252
FatI CATG 8 cut(s) 51, 250, 351, 594, 603, 758, 963, 997
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 873
FspBI CTAG 1 cut(s) 638
GsaI CCCAGC 1 cut(s) 876
HaeIII GGCC 1 cut(s) 773
Hin1II CATG 8 cut(s) 55, 254, 355, 598, 607, 762, 967, 1001
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 3 cut(s) 170, 355, 370
HphI GGTGA 4 cut(s) 266, 296, 676, 815
Hpy166II GTNNAC 2 cut(s) 287, 506
Hpy188I TCNGA 7 cut(s) 203, 222, 360, 394, 556, 854, 880
Hpy188III TCNNGA 5 cut(s) 346, 413, 535, 665, 998
Hpy8I GTNNAC 2 cut(s) 287, 506
HpyAV CCTTC 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 7 cut(s) 10, 123, 195, 425, 719, 842, 902
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 6 cut(s) 186, 234, 340, 393, 701, 877
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 8 cut(s) 55, 254, 355, 598, 607, 762, 967, 1001
Kzo9I GATC 4 cut(s) 436, 544, 826, 836
LmnI GCTCC 1 cut(s) 612
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 4 cut(s) 103, 648, 782, 1025
MalI GATC 4 cut(s) 438, 546, 828, 838
MboI GATC 4 cut(s) 436, 544, 826, 836
MboII GAAGA 4 cut(s) 122, 317, 550, 572
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 2 cut(s) 544, 836
MhlI GDGCHC 3 cut(s) 412, 873, 944
MluCI AATT 9 cut(s) 22, 290, 720, 810, 862, 887, 929, 988, 1017
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 994
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 5 cut(s) 381, 441, 714, 858, 927
MslI CAYNNNNRTG 4 cut(s) 50, 461, 757, 789
MspR9I CCNGG 2 cut(s) 29, 446
MunI CAATTG 1 cut(s) 720
MvaI CCWGG 2 cut(s) 29, 446
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 4 cut(s) 436, 544, 826, 836
NlaIII CATG 8 cut(s) 55, 254, 355, 598, 607, 762, 967, 1001
NlaIV GGNNCC 2 cut(s) 268, 582
NmuCI GTSAC 1 cut(s) 782
NspI RCATGY 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 665
PagI TCATGA 1 cut(s) 997
PceI AGGCCT 1 cut(s) 773
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 170, 370
PfoI TCCNGGA 1 cut(s) 27
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PpuMI RGGWCCY 1 cut(s) 580
PshBI ATTAAT 1 cut(s) 381
PsiI TTATAA 2 cut(s) 41, 1022
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 27, 444
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 2 cut(s) 27, 444
PspN4I GGNNCC 2 cut(s) 268, 582
PspPI GGNCC 2 cut(s) 266, 580
PspPPI RGGWCCY 1 cut(s) 580
PsuI RGATCY 2 cut(s) 544, 836
RsaI GTAC 2 cut(s) 79, 471
RsaNI GTAC 2 cut(s) 78, 470
RseI CAYNNNNRTG 4 cut(s) 50, 461, 757, 789
SaqAI TTAA 5 cut(s) 381, 441, 714, 858, 927
Sau3AI GATC 4 cut(s) 436, 544, 826, 836
Sau96I GGNCC 2 cut(s) 266, 580
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 29, 446
SduI GDGCHC 3 cut(s) 412, 873, 944
SfcI CTRYAG 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 665
SinI GGWCC 2 cut(s) 266, 580
SlaI CTCGAG 1 cut(s) 665
SmiMI CAYNNNNRTG 4 cut(s) 50, 461, 757, 789
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 9 cut(s) 22, 290, 720, 810, 862, 887, 929, 988, 1017
SseBI AGGCCT 1 cut(s) 773
SsiI CCGC 1 cut(s) 316
SspMI CTAG 1 cut(s) 638
StuI AGGCCT 1 cut(s) 773
StyD4I CCNGG 2 cut(s) 27, 444
StyI CCWWGG 2 cut(s) 653, 687
TaiI ACGT 1 cut(s) 409
TaqI TCGA 3 cut(s) 435, 573, 666
TaqII GACCGA 1 cut(s) 254
TasI AATT 9 cut(s) 22, 290, 720, 810, 862, 887, 929, 988, 1017
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 2 cut(s) 170, 370
Tru1I TTAA 5 cut(s) 381, 441, 714, 858, 927
Tru9I TTAA 5 cut(s) 381, 441, 714, 858, 927
TscAI CASTG 3 cut(s) 172, 759, 949
TseFI GTSAC 1 cut(s) 782
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 5 cut(s) 445, 573, 592, 822, 899
TspRI CASTG 3 cut(s) 172, 759, 949
VpaK11BI GGWCC 2 cut(s) 266, 580
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 4 cut(s) 22, 810, 929, 988
XceI RCATGY 1 cut(s) 762
XhoI CTCGAG 1 cut(s) 665
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.