RchiOBHm_Chr3g0483171

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000188
Physical Location & Seq
Forward (+)
29333327 .. 29334196
870 bp
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UTR
Exon/CDS
Intron
PRQ44794

Sequence Viewer

Length: 870 bp
ATGGATTGCATGCTTCAATACCTCTGCCATGACCTTATGCTGCTAGAAAATCAGCTGCCTTGGTTTGTTCTTGAGATTTTATATCGTCTGACTGTCGAAGAATACATCTACTATCCATCACTTAGCACAATGGTGCTCCTCACCTTTAGCTCACAAGGATCACTACTGCACAATGTCGAGTCCTATCTTAGTCACAATGGTCTTGATGATGGTGATGATGAGGATGAGGATGAGGATGATGCTATCTTGCACATACTTGATCTGATAAGAAGTACATTAGTTTTTCGATTTAGAAAGGTGAAGTCTTTGCCCTGCTTATCACAAGTAAAGTTGCCTCCAGCCACTACTCTCTCGGAGGCAGGTGTTGAATTCAGAAGGGCTTGTATGGAAGGCATGATGAACATAGATTTCAAAGACGGCGTGTTTACAATTCCACAACTGTCAATTGCAGAGATGACAGAGCCACTGTTGAGGAACATAATTGCCCTCGAGCAATGTTGTCATGGCCGATCACATAAAATAACTTCCTATTTTATTTTGATGCATAGCCTCATTGCTTCCAGCAAGGATATATATTTTCTTTGTGAGAAAGAAATATTCCTCAACTGGTTCAGCTCTGAAAATGCTTACAAGATCTTCAACAAGCTTTACGATGATACGTTCCTCAAGAACTTCTACTATGGGGAACTATGTGCTGAAGTGAACAACTATTACAACGTTTTGTGGAACAGGTGGCTAGAAAAATTGAAACGTGATCACTTATATAACCCATGGAAGATTACTTCTTTGGTTGCAGCCTTTATTCTTCTGGCTCTCACCTTATTGCAGACCACATATACCATTCAGCAATACTATTCTCCTCGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

33.96

Weight (kDa)

5.03

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 272 2.6e-65 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 350
AclI AACGTT 1 cut(s) 717
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 1 cut(s) 274
AgsI TTSAA 5 cut(s) 17, 368, 412, 640, 748
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 4 cut(s) 55, 150, 615, 646
AluI AGCT 4 cut(s) 55, 150, 615, 646
Alw21I GWGCWC 1 cut(s) 138
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 1 cut(s) 505
ApeKI GCWGC 3 cut(s) 40, 55, 794
ApoI RAATTY 1 cut(s) 368
AsuHPI GGTGA 4 cut(s) 133, 224, 310, 808
AvaI CYCGRG 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 27, 42, 806
BccI CCATC 2 cut(s) 124, 203
BceAI ACGGC 1 cut(s) 433
BclI TGATCA 1 cut(s) 754
BfaI CTAG 2 cut(s) 44, 737
BfuAI ACCTGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 633
BisI GCNGC 3 cut(s) 41, 56, 795
BlsI GCNGC 3 cut(s) 42, 57, 796
BmeT110I CYCGRG 1 cut(s) 488
BmsI GCATC 2 cut(s) 229, 531
BpmI CTGGAG 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 92, 650
BsaJI CCNNGG 2 cut(s) 59, 770
Bse1I ACTGG 1 cut(s) 611
Bse3DI GCAATG 2 cut(s) 500, 552
BseDI CCNNGG 2 cut(s) 59, 770
BseGI GGATG 3 cut(s) 229, 235, 241
BseMI GCAATG 2 cut(s) 500, 552
BseNI ACTGG 1 cut(s) 611
BseRI GAGGAG 2 cut(s) 128, 849
BseXI GCAGC 3 cut(s) 27, 42, 806
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 488
BsnI GGCC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 5 cut(s) 158, 259, 509, 633, 754
Bsp19I CCATGG 1 cut(s) 770
BspANI GGCC 1 cut(s) 507
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 166
BsrDI GCAATG 2 cut(s) 500, 552
BsrI ACTGG 1 cut(s) 611
BssECI CCNNGG 2 cut(s) 59, 770
BssMI GATC 5 cut(s) 158, 259, 509, 633, 754
BssT1I CCWWGG 2 cut(s) 59, 770
Bst4CI ACNGT 3 cut(s) 94, 441, 468
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 122, 188
BstDSI CCRYGG 1 cut(s) 770
BstF5I GGATG 3 cut(s) 229, 235, 241
BstKTI GATC 5 cut(s) 161, 262, 512, 636, 757
BstMBI GATC 5 cut(s) 158, 259, 509, 633, 754
BstNSI RCATGY 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 27, 42, 806
BstX2I RGATCY 1 cut(s) 633
BstYI RGATCY 1 cut(s) 633
BsuRI GGCC 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 770
BtsCI GGATG 3 cut(s) 229, 235, 241
BtsIMutI CAGTG 1 cut(s) 464
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 273
CviAII CATG 5 cut(s) 10, 29, 394, 503, 771
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 2 cut(s) 122, 188
DpnI GATC 5 cut(s) 160, 261, 511, 635, 756
DpnII GATC 5 cut(s) 158, 259, 509, 633, 754
EaeI YGGCCR 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 59, 770
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 59, 770
EcoT22I ATGCAT 1 cut(s) 546
ErhI CCWWGG 2 cut(s) 59, 770
FaeI CATG 5 cut(s) 13, 32, 397, 506, 774
FatI CATG 5 cut(s) 9, 28, 393, 502, 770
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 3 cut(s) 41, 56, 795
FokI GGATG 3 cut(s) 236, 242, 248
Fsp4HI GCNGC 3 cut(s) 41, 56, 795
FspBI CTAG 2 cut(s) 44, 737
GluI GCNGC 3 cut(s) 41, 56, 795
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 507
Hin1II CATG 5 cut(s) 13, 32, 397, 506, 774
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 1 cut(s) 179
HphI GGTGA 4 cut(s) 133, 224, 310, 808
Hpy166II GTNNAC 2 cut(s) 426, 703
Hpy188I TCNGA 5 cut(s) 90, 264, 355, 374, 619
Hpy188III TCNNGA 3 cut(s) 71, 203, 667
Hpy8I GTNNAC 2 cut(s) 426, 703
HpyAV CCTTC 2 cut(s) 369, 383
HpyCH4III ACNGT 3 cut(s) 94, 441, 468
HpyCH4IV ACGT 3 cut(s) 659, 717, 751
HpyCH4V TGCA 7 cut(s) 9, 169, 250, 449, 544, 794, 826
HpyF3I CTNAG 2 cut(s) 122, 188
HpySE526I ACGT 3 cut(s) 659, 717, 751
Hsp92II CATG 5 cut(s) 13, 32, 397, 506, 774
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 5 cut(s) 158, 259, 509, 633, 754
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 7 cut(s) 325, 345, 351, 574, 592, 715, 794
Lsp1109I GCAGC 3 cut(s) 27, 42, 806
LweI GCATC 2 cut(s) 229, 531
MaeI CTAG 2 cut(s) 44, 737
MaeII ACGT 3 cut(s) 659, 717, 751
MaeIII GTNAC 1 cut(s) 191
MalI GATC 5 cut(s) 160, 261, 511, 635, 756
MboI GATC 5 cut(s) 158, 259, 509, 633, 754
MboII GAAGA 4 cut(s) 110, 628, 787, 797
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 5 cut(s) 368, 429, 444, 480, 743
MlyI GAGTC 1 cut(s) 188
Mph1103I ATGCAT 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 55
MunI CAATTG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 770
NdeII GATC 5 cut(s) 158, 259, 509, 633, 754
NlaIII CATG 5 cut(s) 13, 32, 397, 506, 774
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 546
NspI RCATGY 1 cut(s) 13
OliI CACNNNNGTG 1 cut(s) 131
PaeI GCATGC 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 488
PaqCI CACCTGC 1 cut(s) 350
PkrI GCNGC 3 cut(s) 42, 57, 796
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 717
PspXI VCTCGAGB 1 cut(s) 488
PsrI GAACNNNNNNTAC 2 cut(s) 695, 727
PsuI RGATCY 1 cut(s) 633
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 3 cut(s) 41, 56, 795
Sau3AI GATC 5 cut(s) 158, 259, 509, 633, 754
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 2 cut(s) 229, 531
Sfr274I CTCGAG 1 cut(s) 488
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 3 cut(s) 71, 488, 665
SmoI CTYRAG 3 cut(s) 71, 488, 665
SphI GCATGC 1 cut(s) 13
Sse9I AATT 5 cut(s) 368, 429, 444, 480, 743
SspI AATATT 1 cut(s) 597
SspMI CTAG 2 cut(s) 44, 737
StyI CCWWGG 2 cut(s) 59, 770
TaaI ACNGT 3 cut(s) 94, 441, 468
TaiI ACGT 3 cut(s) 662, 720, 754
TaqI TCGA 4 cut(s) 96, 177, 286, 489
TasI AATT 5 cut(s) 368, 429, 444, 480, 743
TatI WGTACW 1 cut(s) 272
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 40, 55, 794
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 413
TspRI CASTG 1 cut(s) 471
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 488
XspI CTAG 2 cut(s) 44, 737
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.