Rh5DG295500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000188
Physical Location & Seq
Forward (+)
37292557 .. 37299106
6550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG295500.1

Sequence Viewer

Length: 1446 bp
ATGATCCTGCAACTTGTCAGATTTTTCAGCAATATGAGCAACTTAGATCAGATGGGTAGCAGTGATATAGAAAAGGGTAAAGTGGATGAAAGCGTTTCAATTCATCAAGACCGGAGAGGTATGACTATTGAACAATGGAAACACACCTTCAATTATGAGCTTTTGGAGGCCAAATCATCACCTGTGCCTGTTTCATGTTGCATCTTCAAAGTTCCTGAGGTGCTACGAAGACAAGAAAAGGAGCCATACGAACCTGACGTAGTCTCAATCGGTCCCTTTCACCGAGGTGTTGATAAATTTCAACTCGTGGAAAATGTGAAAAAATGGTATTTAAACTGTCTTTTCTTGCCCCTGCGCCAGCGCCAGCGCCAGACAGTATTGAACATGGATAGCTTGATTGAAAGCATCAGGGGACAGGTAATACGCGCCCGGGGTTATTATTCAGACCCATGCTATCATCTTGACCAAAACGACTTCATAGAGATGCTCATACTCGATGGTTGTTTCTTAATAGAATTATTTCGGAAGGCACCTTCTGAGCATGCAGATCGACAAGATAAAGACGACCCTATCTTCAACATGCCTTGTATGCTCGAATACCTGTACCATGATCTTCTGTTGCTAGAAAATCAGCTACCTTGGTTTGTGCTCGAGTCTATCTATAACCTAATTGAGGATGGTAGCCCTATAGCACCCCTCAGTCAAGTAGTAATAGACTTCTTCAAAAATTCAGTGGCTGAACCTAAAATTTTTAGCTATCCCAATCCCAAGTCTCCCAAGGTTGAGATTCTTCACATACTTGATCTGATAAGAACTTCCCTCGTTCATGACCATCTGGAACATGCAAACCAACAGAAGACCCCGGCATCAAAGTTGGTAAACCACTTGCCACAGAGGATACCTAGTGCTGCTGCTCTTTCAGAGGCGGGAGTTAAATTTAGAGAGGGCCCCTCAGGTTGCATATTGAACATAACGTTCAAAGGTGGCGTTTTCACCATTCCTCCTCTGGCTATCGATGAAAGGACAGGTCCTATGTTCAGGAACCTTATGGCCTACGAACAGTGTTATGGCAGTTGCAAGCACATGATAACATCCTACGCGGTTTTGATGGATAACCTCATCGATACGAACAAGGATGTGGATCTTCTATGTGAAAAACATATACTAGCCAACTGGTTGAGTGCCGATGATGCTTCGAAGTTCTTCAACGATCTATACAATGACACCACAGTCATTGACTATGTCTACAAGGGAGTTTGCGATGAAGTGCATTCATATCGCAAAGTACCATGGCACAAGTGGAGAAAGAAATTGAAACGTGATTATTTTGAAACACCATGGTCTACTACCTCTTTTATTGCAGCTTTTGTCCTCCTGGTCCTTACCTTCTTGCAGACCATATACACACTCGAACCGTACTATCATCCCCGGCCCGCTCATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

481

Amino Acids

55.82

Weight (kDa)

5.96

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 68 - 461 3.3e-112 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1229
AccB1I GGYRCC 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 1436
AccI GTMKAC 2 cut(s) 1245, 1343
AccII CGCG 2 cut(s) 426, 1100
AciI CCGC 3 cut(s) 926, 1100, 1434
AclI AACGTT 1 cut(s) 974
AclWI GGATC 1 cut(s) 1149
AcsI RAATTY 4 cut(s) 296, 727, 747, 935
AfaI GTAC 3 cut(s) 605, 1287, 1418
AfiI CCNNNNNNNGG 1 cut(s) 673
AjnI CCWGG 1 cut(s) 1374
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 5 cut(s) 160, 393, 634, 756, 1364
AluI AGCT 5 cut(s) 160, 393, 634, 756, 1364
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 2 cut(s) 268, 777
AlwI GGATC 1 cut(s) 1149
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 2 cut(s) 429, 650
AoxI GGCC 4 cut(s) 168, 946, 1050, 1430
ApaI GGGCCC 1 cut(s) 950
ApeKI GCWGC 3 cut(s) 908, 911, 1361
ApoI RAATTY 4 cut(s) 296, 727, 747, 935
Asp700I GAANNNNTTC 2 cut(s) 519, 1202
AspLEI GCGC 4 cut(s) 357, 363, 369, 428
AspS9I GGNCC 6 cut(s) 272, 946, 947, 1028, 1378, 1431
AsuC2I CCSGG 4 cut(s) 430, 431, 863, 1429
AsuHPI GGTGA 3 cut(s) 171, 272, 985
AsuII TTCGAA 1 cut(s) 1196
AvaI CYCGRG 2 cut(s) 429, 650
AvaII GGWCC 3 cut(s) 272, 1028, 1378
AxyI CCTNAGG 2 cut(s) 216, 952
BaeGI GKGCMC 1 cut(s) 950
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 950
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 2 cut(s) 235, 863
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 3 cut(s) 895, 898, 1373
BccI CCATC 5 cut(s) 46, 491, 671, 840, 1102
BcgI CGANNNNNNTGC 4 cut(s) 530, 564, 1259, 1293
BciT130I CCWGG 1 cut(s) 1376
BciVI GTATCC 1 cut(s) 891
BcnI CCSGG 4 cut(s) 430, 431, 863, 1429
BcoDI GTCTC 2 cut(s) 268, 777
BfaI CTAG 3 cut(s) 623, 903, 1166
BfmI CTRYAG 1 cut(s) 687
BfoI RGCGCY 2 cut(s) 364, 370
BfuI GTATCC 1 cut(s) 891
BisI GCNGC 3 cut(s) 909, 912, 1362
BlsI GCNGC 3 cut(s) 910, 913, 1363
Bme1390I CCNGG 5 cut(s) 430, 431, 863, 1376, 1429
Bme18I GGWCC 3 cut(s) 272, 1028, 1378
BmeT110I CYCGRG 2 cut(s) 429, 650
BmgT120I GGNCC 6 cut(s) 272, 946, 947, 1028, 1378, 1431
BmiI GGNNCC 6 cut(s) 243, 274, 531, 948, 949, 1043
BmrFI CCNGG 5 cut(s) 430, 431, 863, 1376, 1429
BmsI GCATC 5 cut(s) 210, 414, 474, 875, 1180
BpiI GAAGAC 2 cut(s) 235, 863
BplI GAGNNNNNCTC 2 cut(s) 935, 967
Bpu14I TTCGAA 1 cut(s) 1196
BpuMI CCSGG 4 cut(s) 430, 431, 863, 1429
Bsa29I ATCGAT 2 cut(s) 1014, 1122
BsaBI GATNNNNATC 1 cut(s) 1140
BsaJI CCNNGG 9 cut(s) 283, 429, 430, 638, 777, 861, 1289, 1337, 1427
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 985, 1015
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 1 cut(s) 1178
Bse21I CCTNAGG 2 cut(s) 216, 952
Bse8I GATNNNNATC 1 cut(s) 1140
BseBI CCWGG 1 cut(s) 1376
BseCI ATCGAT 2 cut(s) 1014, 1122
BseDI CCNNGG 9 cut(s) 283, 429, 430, 638, 777, 861, 1289, 1337, 1427
BseGI GGATG 5 cut(s) 91, 682, 1091, 1141, 1423
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 4 cut(s) 207, 528, 712, 966
BseNI ACTGG 1 cut(s) 1178
BseRI GAGGAG 1 cut(s) 993
BseSI GKGCMC 1 cut(s) 950
BseXI GCAGC 3 cut(s) 895, 898, 1373
Bsh1236I CGCG 2 cut(s) 426, 1100
BshFI GGCC 4 cut(s) 170, 948, 1052, 1432
BshNI GGYRCC 1 cut(s) 529
BshVI ATCGAT 2 cut(s) 1014, 1122
BsiHKAI GWGCWC 1 cut(s) 651
BsiHKCI CYCGRG 2 cut(s) 429, 650
BsiSI CCGG 4 cut(s) 112, 430, 863, 1429
BslFI GGGAC 2 cut(s) 258, 426
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 2 cut(s) 268, 777
BsmFI GGGAC 2 cut(s) 258, 426
BsmI GAATGC 1 cut(s) 1270
BsnI GGCC 4 cut(s) 170, 948, 1052, 1432
BsoBI CYCGRG 2 cut(s) 429, 650
Bsp119I TTCGAA 1 cut(s) 1196
Bsp120I GGGCCC 1 cut(s) 946
Bsp1286I GDGCHC 2 cut(s) 651, 950
Bsp143I GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
Bsp19I CCATGG 2 cut(s) 1289, 1337
BspACI CCGC 3 cut(s) 926, 1100, 1434
BspANI GGCC 4 cut(s) 170, 948, 1052, 1432
BspCNI CTCAG 4 cut(s) 208, 529, 711, 965
BspDI ATCGAT 2 cut(s) 1014, 1122
BspFNI CGCG 2 cut(s) 426, 1100
BspHI TCATGA 2 cut(s) 826, 1438
BspLI GGNNCC 6 cut(s) 243, 274, 531, 948, 949, 1043
BspPI GGATC 1 cut(s) 1149
BspT104I TTCGAA 1 cut(s) 1196
BspT107I GGYRCC 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 1436
BsrI ACTGG 1 cut(s) 1178
BssECI CCNNGG 9 cut(s) 283, 429, 430, 638, 777, 861, 1289, 1337, 1427
BssMI GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 4 cut(s) 638, 777, 1289, 1337
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 1376
Bst4CI ACNGT 5 cut(s) 338, 376, 1062, 1231, 1416
BstBI TTCGAA 1 cut(s) 1196
BstC8I GCNNGC 5 cut(s) 359, 365, 543, 1079, 1434
BstDEI CTNAG 5 cut(s) 43, 216, 537, 698, 952
BstDSI CCRYGG 2 cut(s) 1289, 1337
BstENI CCTNNNNNAGG 1 cut(s) 671
BstF5I GGATG 5 cut(s) 91, 682, 1091, 1141, 1423
BstFNI CGCG 2 cut(s) 426, 1100
BstH2I RGCGCY 2 cut(s) 364, 370
BstHHI GCGC 4 cut(s) 357, 363, 369, 428
BstKTI GATC 7 cut(s) 6, 49, 550, 613, 805, 1144, 1213
BstMAI GTCTC 2 cut(s) 268, 777
BstMBI GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 36, 589, 1190
BstNI CCWGG 1 cut(s) 1376
BstNSI RCATGY 3 cut(s) 545, 583, 845
BstSCI CCNGG 5 cut(s) 428, 429, 861, 1374, 1427
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 950
BstUI CGCG 2 cut(s) 426, 1100
BstV1I GCAGC 3 cut(s) 895, 898, 1373
BstV2I GAAGAC 2 cut(s) 235, 863
BstX2I RGATCY 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1141
Bsu15I ATCGAT 2 cut(s) 1014, 1122
Bsu36I CCTNAGG 2 cut(s) 216, 952
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 4 cut(s) 170, 948, 1052, 1432
BsuTUI ATCGAT 2 cut(s) 1014, 1122
BtgI CCRYGG 2 cut(s) 1289, 1337
BtgZI GCGATG 1 cut(s) 1275
BtsCI GGATG 5 cut(s) 91, 682, 1091, 1141, 1423
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 3 cut(s) 67, 738, 1067
Cac8I GCNNGC 5 cut(s) 359, 365, 543, 1079, 1434
CaiI CAGNNNCTG 1 cut(s) 737
CciI TCATGA 2 cut(s) 826, 1438
CfoI GCGC 4 cut(s) 357, 363, 369, 428
Cfr13I GGNCC 6 cut(s) 272, 946, 947, 1028, 1378, 1431
Cfr9I CCCGGG 1 cut(s) 429
ClaI ATCGAT 2 cut(s) 1014, 1122
Csp6I GTAC 3 cut(s) 604, 1286, 1417
CspCI CAANNNNNGTGG 2 cut(s) 1216, 1251
CviQI GTAC 3 cut(s) 604, 1286, 1417
DdeI CTNAG 5 cut(s) 43, 216, 537, 698, 952
DpnI GATC 7 cut(s) 5, 48, 549, 612, 804, 1143, 1212
DpnII GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
DraI TTTAAA 1 cut(s) 333
DrdI GACNNNNNNGTC 1 cut(s) 1229
DseDI GACNNNNNNGTC 1 cut(s) 1229
Eco130I CCWWGG 4 cut(s) 638, 777, 1289, 1337
Eco24I GRGCYC 1 cut(s) 950
Eco47I GGWCC 3 cut(s) 272, 1028, 1378
Eco81I CCTNAGG 2 cut(s) 216, 952
Eco88I CYCGRG 2 cut(s) 429, 650
EcoNI CCTNNNNNAGG 1 cut(s) 671
EcoO109I RGGNCCY 3 cut(s) 946, 947, 1028
EcoRII CCWGG 1 cut(s) 1374
EcoT14I CCWWGG 4 cut(s) 638, 777, 1289, 1337
EcoT38I GRGCYC 1 cut(s) 950
ErhI CCWWGG 4 cut(s) 638, 777, 1289, 1337
FaqI GGGAC 2 cut(s) 258, 426
FauI CCCGC 2 cut(s) 919, 1441
FblI GTMKAC 2 cut(s) 1245, 1343
Fnu4HI GCNGC 3 cut(s) 909, 912, 1362
FokI GGATG 5 cut(s) 98, 689, 1078, 1148, 1410
FriOI GRGCYC 1 cut(s) 950
Fsp4HI GCNGC 3 cut(s) 909, 912, 1362
FspBI CTAG 3 cut(s) 623, 903, 1166
GlaI GCGC 4 cut(s) 356, 362, 368, 427
GluI GCNGC 3 cut(s) 909, 912, 1362
HaeII RGCGCY 2 cut(s) 364, 370
HaeIII GGCC 4 cut(s) 170, 948, 1052, 1432
HapII CCGG 4 cut(s) 112, 430, 863, 1429
HhaI GCGC 4 cut(s) 357, 363, 369, 428
Hin6I GCGC 4 cut(s) 355, 361, 367, 426
HinP1I GCGC 4 cut(s) 355, 361, 367, 426
HinfI GANTC 2 cut(s) 653, 787
HpaII CCGG 4 cut(s) 112, 430, 863, 1429
HphI GGTGA 3 cut(s) 171, 272, 985
Hpy166II GTNNAC 3 cut(s) 880, 1246, 1344
Hpy188I TCNGA 7 cut(s) 20, 51, 445, 525, 538, 807, 922
Hpy188III TCNNGA 7 cut(s) 107, 215, 461, 827, 836, 1039, 1439
Hpy8I GTNNAC 3 cut(s) 880, 1246, 1344
HpyAV CCTTC 4 cut(s) 157, 520, 543, 1396
HpyCH4III ACNGT 5 cut(s) 338, 376, 1062, 1231, 1416
HpyCH4IV ACGT 3 cut(s) 258, 974, 1318
HpyCH4V TGCA 9 cut(s) 10, 201, 545, 845, 960, 1077, 1270, 1361, 1393
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 589, 1190
HpyF3I CTNAG 5 cut(s) 43, 216, 537, 698, 952
HpySE526I ACGT 3 cut(s) 258, 974, 1318
HspAI GCGC 4 cut(s) 355, 361, 367, 426
Kzo9I GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 3 cut(s) 895, 898, 1373
LweI GCATC 5 cut(s) 210, 414, 474, 875, 1180
MaeI CTAG 3 cut(s) 623, 903, 1166
MaeII ACGT 3 cut(s) 258, 974, 1318
MalI GATC 7 cut(s) 5, 48, 549, 612, 804, 1143, 1212
MbiI CCGCTC 1 cut(s) 1436
MboI GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
MboII GAAGA 9 cut(s) 196, 240, 565, 605, 712, 782, 868, 1136, 1195
MflI RGATCY 1 cut(s) 1141
MhlI GDGCHC 2 cut(s) 651, 950
MluCI AATT 9 cut(s) 99, 151, 296, 515, 669, 727, 747, 935, 1310
MlyI GAGTC 1 cut(s) 662
MroXI GAANNNNTTC 2 cut(s) 519, 1202
MseI TTAA 3 cut(s) 332, 509, 933
MslI CAYNNNNRTG 2 cut(s) 285, 482
MspI CCGG 4 cut(s) 112, 430, 863, 1429
MspR9I CCNGG 5 cut(s) 430, 431, 863, 1376, 1429
Mva1269I GAATGC 1 cut(s) 1270
MvaI CCWGG 1 cut(s) 1376
MvnI CGCG 2 cut(s) 426, 1100
MwoI GCNNNNNNNGC 3 cut(s) 36, 589, 1190
NciI CCSGG 4 cut(s) 430, 431, 863, 1429
NcoI CCATGG 2 cut(s) 1289, 1337
NdeII GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
NlaIV GGNNCC 6 cut(s) 243, 274, 531, 948, 949, 1043
NspI RCATGY 3 cut(s) 545, 583, 845
NspV TTCGAA 1 cut(s) 1196
OliI CACNNNNGTG 1 cut(s) 285
PaeI GCATGC 1 cut(s) 545
PaeR7I CTCGAG 1 cut(s) 650
PagI TCATGA 2 cut(s) 826, 1438
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 1270
PdmI GAANNNNTTC 2 cut(s) 519, 1202
PfeI GAWTC 1 cut(s) 787
PflFI GACNNNGTC 2 cut(s) 260, 1241
PkrI GCNGC 3 cut(s) 910, 913, 1363
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
PpuMI RGGWCCY 1 cut(s) 1028
Psp1406I AACGTT 1 cut(s) 974
Psp5II RGGWCCY 1 cut(s) 1028
Psp6I CCWGG 1 cut(s) 1374
PspGI CCWGG 1 cut(s) 1374
PspN4I GGNNCC 6 cut(s) 243, 274, 531, 948, 949, 1043
PspOMI GGGCCC 1 cut(s) 946
PspPI GGNCC 6 cut(s) 272, 946, 947, 1028, 1378, 1431
PspPPI RGGWCCY 1 cut(s) 1028
PspXI VCTCGAGB 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 1141
PsyI GACNNNGTC 2 cut(s) 260, 1241
RsaI GTAC 3 cut(s) 605, 1287, 1418
RsaNI GTAC 3 cut(s) 604, 1286, 1417
RseI CAYNNNNRTG 2 cut(s) 285, 482
SaqAI TTAA 3 cut(s) 332, 509, 933
SatI GCNGC 3 cut(s) 909, 912, 1362
Sau3AI GATC 7 cut(s) 3, 46, 547, 610, 802, 1141, 1210
Sau96I GGNCC 6 cut(s) 272, 946, 947, 1028, 1378, 1431
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 5 cut(s) 430, 431, 863, 1376, 1429
SduI GDGCHC 2 cut(s) 651, 950
SfaNI GCATC 5 cut(s) 210, 414, 474, 875, 1180
SfcI CTRYAG 1 cut(s) 687
Sfr274I CTCGAG 1 cut(s) 650
SfuI TTCGAA 1 cut(s) 1196
SinI GGWCC 3 cut(s) 272, 1028, 1378
SlaI CTCGAG 1 cut(s) 650
SmaI CCCGGG 1 cut(s) 431
SmiMI CAYNNNNRTG 2 cut(s) 285, 482
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
SphI GCATGC 1 cut(s) 545
Sse9I AATT 9 cut(s) 99, 151, 296, 515, 669, 727, 747, 935, 1310
SsiI CCGC 3 cut(s) 926, 1100, 1434
SspMI CTAG 3 cut(s) 623, 903, 1166
StyD4I CCNGG 5 cut(s) 428, 429, 861, 1374, 1427
StyI CCWWGG 4 cut(s) 638, 777, 1289, 1337
TaaI ACNGT 5 cut(s) 338, 376, 1062, 1231, 1416
TaiI ACGT 3 cut(s) 261, 977, 1321
TaqI TCGA 8 cut(s) 495, 550, 594, 651, 1014, 1122, 1196, 1410
TaqII GACCGA 1 cut(s) 260
TasI AATT 9 cut(s) 99, 151, 296, 515, 669, 727, 747, 935, 1310
TfiI GAWTC 1 cut(s) 787
Tru1I TTAA 3 cut(s) 332, 509, 933
Tru9I TTAA 3 cut(s) 332, 509, 933
TscAI CASTG 3 cut(s) 67, 738, 1067
TseI GCWGC 3 cut(s) 908, 911, 1361
TspDTI ATGAA 8 cut(s) 92, 102, 183, 466, 815, 1032, 1263, 1278
TspMI CCCGGG 1 cut(s) 429
TspRI CASTG 3 cut(s) 67, 738, 1067
Tth111I GACNNNGTC 2 cut(s) 260, 1241
VpaK11BI GGWCC 3 cut(s) 272, 1028, 1378
XagI CCTNNNNNAGG 1 cut(s) 671
XapI RAATTY 4 cut(s) 296, 727, 747, 935
XceI RCATGY 3 cut(s) 545, 583, 845
XcmI CCANNNNNNNNNTGG 2 cut(s) 1003, 1296
XhoI CTCGAG 1 cut(s) 650
XmaI CCCGGG 1 cut(s) 429
XmiI GTMKAC 2 cut(s) 1245, 1343
XmnI GAANNNNTTC 2 cut(s) 519, 1202
XspI CTAG 3 cut(s) 623, 903, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.