Rmu_sc0000367.1_g000060

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
OG0000188
Physical Location & Seq
Forward (+)
255209 .. 255613
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000367.1_g000060.1.cds

Sequence Viewer

Length: 405 bp
atgaagtcctcttatgcatgcacgcacttagatttgaaagagttgattgcaaaagttgttgagcgttcagatcaaaagaatgatgggcctattcagtttgagaaaggcgcccgcgatttctatgcagaaaaaattgattatgaatccaattacttcaaagaaatgatgatagtcgacggctgctttctaattcaactgtttcgaaagtgcactgatgtgcaacctaggggaagtgatgacccgttgttcaacatggattgcatgttccatttcttatgccatgaccttttgctgcttgaaaaccaactaccctggtttgttcttgaactttatatagccttatccttgcctattccggaggtcctgggctactcttggcccttccctctctatcctcatacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

134

Amino Acids

15.75

Weight (kDa)

4.83

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 108
AgsI TTSAA 6 cut(s) 37, 157, 194, 250, 299, 326
AjnI CCWGG 2 cut(s) 311, 363
AleI CACNNNNGTG 1 cut(s) 215
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
Alw21I GWGCWC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 2 cut(s) 86, 377
ApaLI GTGCAC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 180, 292
AspA2I CCTAGG 1 cut(s) 224
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 86, 361, 378
AsuII TTCGAA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 361
AvrII CCTAGG 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 167, 279
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 2 cut(s) 313, 365
BfaI CTAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 2 cut(s) 181, 293
BlnI CCTAGG 1 cut(s) 224
BlsI GCNGC 2 cut(s) 182, 294
Bme1390I CCNGG 2 cut(s) 313, 365
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 3 cut(s) 86, 361, 378
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 313, 365
Bpu14I TTCGAA 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 224, 311, 364
BsaWI WCCGGW 1 cut(s) 355
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 2 cut(s) 313, 365
BseDI CCNNGG 3 cut(s) 224, 311, 364
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 2 cut(s) 167, 279
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 88, 379
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 356
BsnI GGCC 2 cut(s) 88, 379
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 112
BspANI GGCC 2 cut(s) 88, 379
BspEI TCCGGA 1 cut(s) 355
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 224, 311, 364
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 313, 365
Bst4CI ACNGT 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 3 cut(s) 19, 23, 112
BstDEI CTNAG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstNI CCWGG 2 cut(s) 313, 365
BstNSI RCATGY 2 cut(s) 21, 265
BstSCI CCNGG 2 cut(s) 311, 363
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 167, 279
BsuRI GGCC 2 cut(s) 88, 379
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 19, 23, 112
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 86, 361, 378
CviAII CATG 4 cut(s) 18, 253, 262, 281
CviJI RGCY 5 cut(s) 88, 180, 338, 369, 379
CviKI_1 RGCY 5 cut(s) 88, 180, 338, 369, 379
DdeI CTNAG 1 cut(s) 28
DinI GGCGCC 1 cut(s) 109
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 311, 363
EcoT14I CCWWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 4 cut(s) 21, 256, 265, 284
FatI CATG 4 cut(s) 17, 252, 261, 280
FauI CCCGC 1 cut(s) 119
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 181, 293
Fsp4HI GCNGC 2 cut(s) 181, 293
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 181, 293
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 88, 379
HapII CCGG 1 cut(s) 356
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 21, 256, 265, 284
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 175, 210
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 323, 356
Hpy8I GTNNAC 2 cut(s) 175, 210
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 7 cut(s) 17, 21, 50, 125, 210, 220, 261
HpyF3I CTNAG 1 cut(s) 28
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 21, 256, 265, 284
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 298, 325, 350, 369, 377
Lsp1109I GCAGC 2 cut(s) 167, 279
MaeI CTAG 1 cut(s) 225
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 3 cut(s) 132, 148, 189
Mly113I GGCGCC 1 cut(s) 108
MnlI CCTC 4 cut(s) 19, 352, 396, 405
Mph1103I ATGCAT 1 cut(s) 19
MroI TCCGGA 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 313, 365
MvaI CCWGG 2 cut(s) 313, 365
MvnI CGCG 1 cut(s) 114
NarI GGCGCC 1 cut(s) 108
NdeII GATC 1 cut(s) 70
NlaIII CATG 4 cut(s) 21, 256, 265, 284
NlaIV GGNNCC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 2 cut(s) 21, 265
NspV TTCGAA 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 215
PaeI GCATGC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 182, 294
PluTI GGCGCC 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 311, 363
PspGI CCWGG 2 cut(s) 311, 363
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 3 cut(s) 86, 361, 378
PspPPI RGGWCCY 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 215
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 2 cut(s) 181, 293
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 3 cut(s) 86, 361, 378
ScrFI CCNGG 2 cut(s) 313, 365
SduI GDGCHC 1 cut(s) 212
SetI ASST 3 cut(s) 226, 288, 363
SfoI GGCGCC 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 202
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 215
SphI GCATGC 1 cut(s) 21
Sse9I AATT 3 cut(s) 132, 148, 189
SsiI CCGC 1 cut(s) 112
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 311, 363
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 174, 202
TasI AATT 3 cut(s) 132, 148, 189
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 1 cut(s) 217
TseI GCWGC 2 cut(s) 180, 292
TspDTI ATGAA 2 cut(s) 17, 156
TspRI CASTG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 2 cut(s) 21, 265
XmaJI CCTAGG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 225
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.