Rorug03G0327300

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000188
Physical Location & Seq
Reverse (-)
36210181 .. 36210983
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0327300.1

Sequence Viewer

Length: 612 bp
ATGGCAGAGGTGCGGTCCAGGGAAGGGGGGAGACCTCCGATCTCGGGTGGGGAAGACAGATCTAGATCTGGCCTTCCCGATTTGCGGTCGACGGTGGCGGTGGGTTCTGGCGGCTCCGTTTCGGCGGTCTGGGAGGTGGCAGTGCTGTGTTCCAGGGCTGGCGGCGGCGACTCGACTTCGGAGTGGGCTGATCGGCCTCGATCTCCTCTTCTGGGATCGGGGAGGATGGCTGCCATGGTGCAGCGCTGGGATGGAGCTTTCCGTCTGCGTGTTGTGGCGGTTCTTGGGCATCTGGGATCTGTACGAAGGTGGAGATCTCGTTCTCATGGCGGTGTTCAGCCCGGTGAGGGCTTAGCTCGTTTTTGGATCTGGTTTCTGACGTTTTTCAGGTTGTTGGGTGTTCTGCGTTGGGTCGCGGTGGTGAGGCGGCACAGGGATGCCACGCGGCGGCGGTGTGGACGTTGGCTGCAGGCGTGGTGGGCTGCTGGATTGGGTCCTTGGGTGGTGAGTTCCTTGCATTCGCAAATGGTCGCAACCTCCCAGAGACAGCAAAATGTCTGCTCTAGGCAGGCGGCGAGTTCCTTGCGTGGTCAAATGGTCGCTGCCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

203

Amino Acids

22.24

Weight (kDa)

11.94

Isoelectric Point (pI)

73.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 89
AccII CGCG 2 cut(s) 416, 445
AclWI GGATC 3 cut(s) 223, 304, 374
AfaI GTAC 1 cut(s) 303
AfeI AGCGCT 1 cut(s) 245
AfiI CCNNNNNNNGG 6 cut(s) 24, 44, 84, 212, 347, 447
AjnI CCWGG 2 cut(s) 17, 152
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 2 cut(s) 257, 356
AluI AGCT 2 cut(s) 257, 356
Alw26I GTCTC 2 cut(s) 25, 538
AlwI GGATC 3 cut(s) 223, 304, 374
Ama87I CYCGRG 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 245
AoxI GGCC 2 cut(s) 70, 194
ApeKI GCWGC 5 cut(s) 230, 241, 466, 482, 602
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 15, 494
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 356, 433, 517
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 2 cut(s) 15, 494
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 5 cut(s) 217, 253, 453, 469, 589
BccI CCATC 2 cut(s) 220, 245
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 2 cut(s) 19, 154
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 25, 538
BfaI CTAG 3 cut(s) 63, 564, 610
BfmI CTRYAG 1 cut(s) 467
BfoI RGCGCY 1 cut(s) 247
BglII AGATCT 3 cut(s) 59, 65, 314
BlpI GCTNAGC 1 cut(s) 352
Bme1390I CCNGG 3 cut(s) 19, 154, 342
Bme18I GGWCC 2 cut(s) 15, 494
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 15, 494
BmiI GGNNCC 2 cut(s) 115, 495
BmrFI CCNGG 3 cut(s) 19, 154, 342
BmsI GCATC 2 cut(s) 298, 427
BpiI GAAGAC 1 cut(s) 60
Bpu1102I GCTNAGC 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 18, 153, 234, 497
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 44, 84, 212, 347, 447
Bse8I GATNNNNATC 1 cut(s) 64
BseBI CCWGG 2 cut(s) 19, 154
BseDI CCNNGG 4 cut(s) 18, 153, 234, 497
BseGI GGATG 3 cut(s) 231, 256, 442
BseJI GATNNNNATC 1 cut(s) 64
BseLI CCNNNNNNNGG 6 cut(s) 24, 44, 84, 212, 347, 447
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 5 cut(s) 217, 253, 453, 469, 589
BseYI CCCAGC 1 cut(s) 246
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 2 cut(s) 416, 445
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 72, 196
BsiEI CGRYCG 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 6 cut(s) 24, 44, 84, 212, 347, 447
BsmAI GTCTC 2 cut(s) 25, 538
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 2 cut(s) 72, 196
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
Bsp1720I GCTNAGC 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 234
BspANI GGCC 2 cut(s) 72, 196
BspFNI CGCG 2 cut(s) 416, 445
BspLI GGNNCC 2 cut(s) 115, 495
BspMAI CTGCAG 1 cut(s) 471
BspPI GGATC 3 cut(s) 223, 304, 374
BspTNI GGTCTC 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 18, 153, 234, 497
BssMI GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
BssT1I CCWWGG 2 cut(s) 234, 497
Bst2UI CCWGG 2 cut(s) 19, 154
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 160, 471, 570
BstDEI CTNAG 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 231, 256, 442
BstFNI CGCG 2 cut(s) 416, 445
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 9 cut(s) 42, 62, 68, 193, 203, 218, 299, 317, 369
BstMAI GTCTC 2 cut(s) 25, 538
BstMBI GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 2 cut(s) 19, 154
BstSCI CCNGG 3 cut(s) 17, 152, 340
BstSFI CTRYAG 1 cut(s) 467
BstUI CGCG 2 cut(s) 416, 445
BstV1I GCAGC 5 cut(s) 217, 253, 453, 469, 589
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 5 cut(s) 59, 65, 296, 314, 366
BstYI RGATCY 5 cut(s) 59, 65, 296, 314, 366
BsuRI GGCC 2 cut(s) 72, 196
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 3 cut(s) 231, 256, 442
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 160, 471, 570
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 15, 494
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 235, 326
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 352
DpnI GATC 9 cut(s) 41, 61, 67, 192, 202, 217, 298, 316, 368
DpnII GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 234, 497
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 15, 494
Eco47III AGCGCT 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 17, 152
EcoT14I CCWWGG 2 cut(s) 234, 497
ErhI CCWWGG 2 cut(s) 234, 497
FaeI CATG 2 cut(s) 238, 329
FaiI YATR 2 cut(s) 236, 327
FatI CATG 2 cut(s) 234, 325
FblI GTMKAC 1 cut(s) 89
FokI GGATG 3 cut(s) 238, 263, 449
FspBI CTAG 3 cut(s) 63, 564, 610
GlaI GCGC 1 cut(s) 245
GsaI CCCAGC 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 2 cut(s) 72, 196
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 246
Hin1II CATG 2 cut(s) 238, 329
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 342
HphI GGTGA 3 cut(s) 356, 433, 517
Hpy166II GTNNAC 2 cut(s) 90, 458
Hpy188I TCNGA 3 cut(s) 39, 181, 378
Hpy188III TCNNGA 2 cut(s) 63, 77
Hpy8I GTNNAC 2 cut(s) 90, 458
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 17, 83, 300
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 2 cut(s) 380, 460
HpyCH4V TGCA 3 cut(s) 241, 469, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 2 cut(s) 380, 460
Hsp92II CATG 2 cut(s) 238, 329
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
LmnI GCTCC 2 cut(s) 119, 254
Lsp1109I GCAGC 5 cut(s) 217, 253, 453, 469, 589
LweI GCATC 2 cut(s) 298, 427
MaeI CTAG 3 cut(s) 63, 564, 610
MaeII ACGT 2 cut(s) 380, 460
MalI GATC 9 cut(s) 41, 61, 67, 192, 202, 217, 298, 316, 368
MboI GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
MboII GAAGA 2 cut(s) 65, 200
MflI RGATCY 5 cut(s) 59, 65, 296, 314, 366
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 8 cut(s) 45, 127, 207, 216, 216, 340, 417, 547
MslI CAYNNNNRTG 2 cut(s) 330, 435
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 3 cut(s) 19, 154, 342
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 2 cut(s) 19, 154
MvnI CGCG 2 cut(s) 416, 445
MwoI GCNNNNNNNGC 1 cut(s) 479
NciI CCSGG 1 cut(s) 342
NcoI CCATGG 1 cut(s) 234
NdeII GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
NlaIII CATG 2 cut(s) 238, 329
NlaIV GGNNCC 2 cut(s) 115, 495
PctI GAATGC 1 cut(s) 517
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 494
Psp5II RGGWCCY 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 17, 152
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 2 cut(s) 17, 152
PspN4I GGNNCC 2 cut(s) 115, 495
PspPI GGNCC 2 cut(s) 15, 494
PspPPI RGGWCCY 1 cut(s) 494
PstI CTGCAG 1 cut(s) 471
PsuI RGATCY 5 cut(s) 59, 65, 296, 314, 366
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
RseI CAYNNNNRTG 2 cut(s) 330, 435
SalI GTCGAC 1 cut(s) 88
Sau3AI GATC 9 cut(s) 39, 59, 65, 190, 200, 215, 296, 314, 366
Sau96I GGNCC 2 cut(s) 15, 494
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 19, 154, 342
SfaNI GCATC 2 cut(s) 298, 427
SfcI CTRYAG 1 cut(s) 467
SinI GGWCC 2 cut(s) 15, 494
SmiMI CAYNNNNRTG 2 cut(s) 330, 435
SspMI CTAG 3 cut(s) 63, 564, 610
StyD4I CCNGG 3 cut(s) 17, 152, 340
StyI CCWWGG 2 cut(s) 234, 497
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 2 cut(s) 383, 463
TaqI TCGA 3 cut(s) 89, 173, 199
TauI GCSGC 8 cut(s) 114, 165, 168, 430, 448, 451, 575, 608
TscAI CASTG 1 cut(s) 147
TseI GCWGC 5 cut(s) 230, 241, 466, 482, 602
TspGWI ACGGA 2 cut(s) 106, 251
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 15, 494
XbaI TCTAGA 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 3 cut(s) 63, 564, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.