Rh7DG075500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000188
Physical Location & Seq
Reverse (-)
5872138 .. 5882643
10506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG075500.1

Sequence Viewer

Length: 213 bp
ATGATCGAAGAGGCTCCGACGCCGTCGCGCGGTGCTTCAGAAGACATCGTGAGCGTCATGGCAAACTACATAGAAAGATGGTGTGATGAGCATGATAGTTTGATTGTTGTAGAAGATGACAAGAAGAGCACAGAAATTGTTGAAGCATTGGAAAAGACCATGAGCGCTAAGCTTCGCAGTGATTCACCTTGTCTGCTAAGTGCTGCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.71

Weight (kDa)

4.37

Isoelectric Point (pI)

80.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 28, 30
AciI CCGC 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 20
AfeI AGCGCT 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 131
Aor51HI AGCGCT 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 30, 167
AsuHPI GGTGA 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 1 cut(s) 204
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 2 cut(s) 28, 30
BsiHKAI GWGCWC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 1 cut(s) 30
BspFNI CGCG 2 cut(s) 28, 30
BspLI GGNNCC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 119
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 20
Bst6I CTCTTC 2 cut(s) 3, 119
BstACI GRCGYC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 168, 197
BstFNI CGCG 2 cut(s) 28, 30
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 30, 167
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstUI CGCG 2 cut(s) 28, 30
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
CfoI GCGC 2 cut(s) 30, 167
CseI GACGC 2 cut(s) 28, 43
CviAII CATG 3 cut(s) 58, 92, 160
CviJI RGCY 2 cut(s) 14, 172
CviKI_1 RGCY 2 cut(s) 14, 172
DdeI CTNAG 2 cut(s) 168, 197
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 3, 119
EarI CTCTTC 2 cut(s) 3, 119
Eco47III AGCGCT 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 21
FaeI CATG 3 cut(s) 61, 95, 163
FaiI YATR 4 cut(s) 59, 71, 93, 161
FatI CATG 3 cut(s) 57, 91, 159
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspEI CC 8 cut(s) 15, 30, 36, 44, 64, 134, 172, 201
GlaI GCGC 2 cut(s) 29, 166
GluI GCNGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 168
HgaI GACGC 2 cut(s) 28, 43
HhaI GCGC 2 cut(s) 30, 167
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 3 cut(s) 61, 95, 163
Hin6I GCGC 2 cut(s) 28, 165
HinP1I GCGC 2 cut(s) 28, 165
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 182
HphI GGTGA 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 18, 40
Hpy188III TCNNGA 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 22, 28
HpyCH4V TGCA 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 168, 197
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 3 cut(s) 61, 95, 163
HspAI GCGC 2 cut(s) 28, 165
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 1 cut(s) 190
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 20, 53, 125, 136
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 1 cut(s) 4
MvnI CGCG 2 cut(s) 28, 30
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 61, 95, 163
NlaIV GGNNCC 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 119
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 3
SduI GDGCHC 1 cut(s) 131
SetI ASST 3 cut(s) 174, 190, 212
SgeI CNNG 8 cut(s) 39, 41, 61, 70, 104, 133, 172, 201
Sse9I AATT 1 cut(s) 135
SsiI CCGC 1 cut(s) 30
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 135
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 203
TspRI CASTG 1 cut(s) 184
Tth111I GACNNNGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.