RLG00000036132

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000188
Physical Location & Seq
Reverse (-)
76185373 .. 76186369
997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036132

Sequence Viewer

Length: 711 bp
ATGGAAAATGTGAAACTATGGTATTTGCATTGTATCTTCTCAAGAACGAGTGGTATAAGTTTGGGAAGCTTGGTCACTGCCATTATGAAGCTTGAGAAAGAAGCCCGTGATTGTTATGCAGAATCATTGGATCATCTCAATCAAAAGGTCTTTGTTAAGATGCTGATTATTGATGGTTGCTTCCTAATAGAACTATTTGACAAGCTGCCTCACTATCATGTACAAGAAAAGATGAACGACCCCATTTTCACCATATCAGGTATGCTCGATTGCGTATACCATGATATTGTGTTGCTAGAAAAGAAAATATCTTGGTTTGTACTCGAGGTTTTGTACAACAAAATCAAAATCGAGACTAATAATAATCAAGGAATGCCCCTCGATGAACTAGTGATCAATCAGGGTTTGATAATTGGCTTGTCGACCCCAAACCCAAACTTCCTCATGCAATTTTGCATATCCTTAATCTCATTAATTAGAGGTTCCATCGTTCTTAAGCATAAACAATATAATCTTTTACACGGCGAGAATAGGTTGGCAAATTCGGTACCTAATGTTGTTGCTCTTTCAGAGGTAGGCGTGAAATTCAAAATGGGCGCCCTGGGTTGCATATTGAACATAGAGTTCAAGAATGGTGTTTTTACAGTTCCGCCATTGGGATTTGAGACATCGGATAGTCTGTTGTTCAGGAACATGATTGCATTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

237

Amino Acids

26.8

Weight (kDa)

6.17

Isoelectric Point (pI)

27.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 236 5.4e-40 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 2 cut(s) 547, 596
AccI GTMKAC 2 cut(s) 276, 422
AciI CCGC 1 cut(s) 650
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 541, 584
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 4 cut(s) 222, 321, 335, 549
AfiI CCNNNNNNNGG 1 cut(s) 656
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 3 cut(s) 589, 616, 628
AhlI ACTAGT 1 cut(s) 388
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 3 cut(s) 69, 91, 205
AluI AGCT 3 cut(s) 69, 91, 205
Alw26I GTCTC 2 cut(s) 347, 659
AlwI GGATC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 2 cut(s) 541, 584
AseI ATTAAT 1 cut(s) 473
Asp718I GGTACC 1 cut(s) 547
AspLEI GCGC 1 cut(s) 599
AsuHPI GGTGA 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 323
BanI GGYRCC 2 cut(s) 547, 596
BbvI GCAGC 1 cut(s) 192
BccI CCATC 2 cut(s) 167, 494
BceAI ACGGC 1 cut(s) 538
BciT130I CCWGG 1 cut(s) 602
BclI TGATCA 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 347, 659
BcuI ACTAGT 1 cut(s) 388
BfaI CTAG 2 cut(s) 296, 389
BfoI RGCGCY 1 cut(s) 600
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 602
BmeT110I CYCGRG 1 cut(s) 323
BmiI GGNNCC 3 cut(s) 484, 549, 598
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 25, 113
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 600, 601
Bsc4I CCNNNNNNNGG 1 cut(s) 656
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 600, 601
BseLI CCNNNNNNNGG 1 cut(s) 656
BseXI GCAGC 1 cut(s) 192
BshNI GGYRCC 2 cut(s) 547, 596
BsiHKCI CYCGRG 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 2 cut(s) 347, 659
BsmI GAATGC 2 cut(s) 378, 701
BsoBI CYCGRG 1 cut(s) 323
Bsp1407I TGTACA 2 cut(s) 220, 333
Bsp143I GATC 2 cut(s) 130, 393
BspACI CCGC 1 cut(s) 650
BspLI GGNNCC 3 cut(s) 484, 549, 598
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 2 cut(s) 547, 596
BspTI CTTAAG 1 cut(s) 494
BsrGI TGTACA 2 cut(s) 220, 333
BssECI CCNNGG 2 cut(s) 600, 601
BssMI GATC 2 cut(s) 130, 393
BssNAI GTATAC 1 cut(s) 277
BssNI GRCGYC 1 cut(s) 597
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 1 cut(s) 646
BstACI GRCGYC 1 cut(s) 597
BstAFI CTTAAG 1 cut(s) 494
BstAUI TGTACA 2 cut(s) 220, 333
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 2 cut(s) 133, 396
BstMAI GTCTC 2 cut(s) 347, 659
BstMBI GATC 2 cut(s) 130, 393
BstNI CCWGG 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 599
Csp6I GTAC 4 cut(s) 221, 320, 334, 548
CviAII CATG 4 cut(s) 218, 281, 445, 694
CviJI RGCY 5 cut(s) 69, 91, 104, 205, 417
CviKI_1 RGCY 5 cut(s) 69, 91, 104, 205, 417
CviQI GTAC 4 cut(s) 221, 320, 334, 548
DinI GGCGCC 1 cut(s) 598
DpnI GATC 2 cut(s) 132, 395
DpnII GATC 2 cut(s) 130, 393
EciI GGCGGA 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 598
EheI GGCGCC 1 cut(s) 598
FaeI CATG 4 cut(s) 221, 284, 448, 697
FatI CATG 4 cut(s) 217, 280, 444, 693
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 2 cut(s) 276, 422
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 296, 389
GlaI GCGC 1 cut(s) 598
GluI GCNGC 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 600
HhaI GCGC 1 cut(s) 599
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 4 cut(s) 221, 284, 448, 697
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HindIII AAGCTT 2 cut(s) 67, 89
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 277, 423
Hpy188I TCNGA 2 cut(s) 571, 673
Hpy188III TCNNGA 4 cut(s) 42, 352, 628, 688
Hpy8I GTNNAC 2 cut(s) 277, 423
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4V TGCA 6 cut(s) 28, 119, 448, 456, 609, 701
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 4 cut(s) 221, 284, 448, 697
HspAI GCGC 1 cut(s) 597
KasI GGCGCC 1 cut(s) 596
KpnI GGTACC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 130, 393
LpnPI CCDG 5 cut(s) 243, 386, 587, 614, 673
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 296, 389
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 132, 395
MboI GATC 2 cut(s) 130, 393
MboII GAAGA 1 cut(s) 28
MluCI AATT 5 cut(s) 411, 449, 474, 541, 584
Mly113I GGCGCC 1 cut(s) 597
MnlI CCTC 6 cut(s) 219, 319, 389, 452, 473, 565
MseI TTAA 4 cut(s) 156, 464, 473, 495
MslI CAYNNNNRTG 1 cut(s) 216
MspCI CTTAAG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 602
Mva1269I GAATGC 2 cut(s) 378, 701
MvaI CCWGG 1 cut(s) 602
NarI GGCGCC 1 cut(s) 597
NdeII GATC 2 cut(s) 130, 393
NlaIII CATG 4 cut(s) 221, 284, 448, 697
NlaIV GGNNCC 3 cut(s) 484, 549, 598
NmuCI GTSAC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 323
PasI CCCWGGG 1 cut(s) 601
PctI GAATGC 2 cut(s) 378, 701
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 207
PluTI GGCGCC 1 cut(s) 600
PshBI ATTAAT 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 600
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 3 cut(s) 484, 549, 598
PspXI VCTCGAGB 1 cut(s) 323
RsaI GTAC 4 cut(s) 222, 321, 335, 549
RsaNI GTAC 4 cut(s) 221, 320, 334, 548
RseI CAYNNNNRTG 1 cut(s) 216
SalI GTCGAC 1 cut(s) 421
SaqAI TTAA 4 cut(s) 156, 464, 473, 495
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 130, 393
ScrFI CCNGG 1 cut(s) 602
SfaNI GCATC 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 598
Sfr274I CTCGAG 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 4 cut(s) 40, 92, 323, 494
SmoI CTYRAG 4 cut(s) 40, 92, 323, 494
SpeI ACTAGT 1 cut(s) 388
Sse9I AATT 5 cut(s) 411, 449, 474, 541, 584
SsiI CCGC 1 cut(s) 650
SspDI GGCGCC 1 cut(s) 596
SspMI CTAG 2 cut(s) 296, 389
StyD4I CCNGG 1 cut(s) 600
TaaI ACNGT 1 cut(s) 646
TaqI TCGA 6 cut(s) 267, 324, 351, 381, 422, 705
TasI AATT 5 cut(s) 411, 449, 474, 541, 584
TatI WGTACW 3 cut(s) 220, 319, 333
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 4 cut(s) 156, 464, 473, 495
Tru9I TTAA 4 cut(s) 156, 464, 473, 495
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 101, 248, 399
TspRI CASTG 1 cut(s) 82
Vha464I CTTAAG 1 cut(s) 494
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 2 cut(s) 541, 584
XhoI CTCGAG 1 cut(s) 323
XmiI GTMKAC 2 cut(s) 276, 422
XspI CTAG 2 cut(s) 296, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.