RchiOBHm_Chr4g0411041

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000188
Physical Location & Seq
Reverse (-)
34839857 .. 34840435
579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38191

Sequence Viewer

Length: 579 bp
ATGGCAAATGGGGAAGATCATAGTAGTGCTAATCATACTTCGATTCTTATGGAAGAGAAATCGGACATTCTTAACACATTGAAAGCCACCATGAGTGCAAAGCTTCGTCCTGATTCACCCATGTTTCCAACAAGCTGCATCTTCAGAGTTCCCCAGCTGCTTCGGAGACATAACGAGGAGGCATATCAACCTTTTATAGTGTCAATTGGACCCCTTCACCGAGGAGGCGAACAATTTCAATCCATAGAAATTGTGAAACAATGGTATTTATATAACCTTCTCTCAAGCATGAATATAAGTTTGCAAATATTCATTGACCGTATTGATAAGTTTTTAGAACAAAGAAAAGAGGGCATTATTGATCGGTTTGAGCAACACGCGCGGAGTTTTTATGCAGAACCACTTCATCATATTAACCGGAATGACTTCATAGAAATGATGATCCTTGATGGTTGCTTCTTGATACAACTATTTCGGAATTTTATTCACGGTGAAATCAAGAAGGGTAAAATCCTCAAATGGTACCCGAACCATTACGAAATGCACTTTTTGGTACCTACAAATTTTCAGGGAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

192

Amino Acids

22.64

Weight (kDa)

6.79

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 47 - 169 1.1e-27 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 522, 553
AccB1I GGYRCC 2 cut(s) 522, 553
AccII CGCG 2 cut(s) 380, 382
AciI CCGC 1 cut(s) 382
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 2 cut(s) 478, 562
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 2 cut(s) 524, 555
AgsI TTSAA 2 cut(s) 82, 239
AluBI AGCT 3 cut(s) 103, 135, 157
AluI AGCT 3 cut(s) 103, 135, 157
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 135, 157
ApoI RAATTY 2 cut(s) 478, 562
Asp700I GAANNNNTTC 3 cut(s) 234, 402, 425
Asp718I GGTACC 2 cut(s) 522, 553
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 108, 209, 503
AvaII GGWCC 1 cut(s) 209
BanI GGYRCC 2 cut(s) 522, 553
BbvI GCAGC 2 cut(s) 122, 144
BccI CCATC 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 577
BisI GCNGC 2 cut(s) 136, 158
BlsI GCNGC 2 cut(s) 137, 159
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 3 cut(s) 211, 524, 555
BmsI GCATC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 191, 237
BseXI GCAGC 2 cut(s) 122, 144
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 380, 382
BshNI GGYRCC 2 cut(s) 522, 553
BsiSI CCGG 1 cut(s) 418
BsmAI GTCTC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 16, 361, 441
BspACI CCGC 1 cut(s) 382
BspFNI CGCG 2 cut(s) 380, 382
BspLI GGNNCC 3 cut(s) 211, 524, 555
BspPI GGATC 1 cut(s) 436
BspT107I GGYRCC 2 cut(s) 522, 553
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 3 cut(s) 16, 361, 441
Bst4CI ACNGT 2 cut(s) 320, 491
Bst6I CTCTTC 1 cut(s) 48
BstFNI CGCG 2 cut(s) 380, 382
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 3 cut(s) 19, 364, 444
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 3 cut(s) 16, 361, 441
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstUI CGCG 2 cut(s) 380, 382
BstV1I GCAGC 2 cut(s) 122, 144
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 523, 554
CviAII CATG 3 cut(s) 91, 121, 289
CviJI RGCY 4 cut(s) 86, 103, 135, 157
CviKI_1 RGCY 4 cut(s) 86, 103, 135, 157
CviQI GTAC 2 cut(s) 523, 554
DpnI GATC 3 cut(s) 18, 363, 443
DpnII GATC 3 cut(s) 16, 361, 441
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 127
FaeI CATG 3 cut(s) 94, 124, 292
FatI CATG 3 cut(s) 90, 120, 288
Fnu4HI GCNGC 2 cut(s) 136, 158
Fsp4HI GCNGC 2 cut(s) 136, 158
FspBI CTAG 1 cut(s) 577
GlaI GCGC 1 cut(s) 381
GluI GCNGC 2 cut(s) 136, 158
GsaI CCCAGC 1 cut(s) 157
HapII CCGG 1 cut(s) 418
HhaI GCGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 94, 124, 292
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 43, 113, 573
HpaII CCGG 1 cut(s) 418
HphI GGTGA 3 cut(s) 108, 209, 503
Hpy188I TCNGA 4 cut(s) 64, 146, 165, 477
Hpy188III TCNNGA 3 cut(s) 110, 460, 499
HpyAV CCTTC 3 cut(s) 224, 287, 496
HpyCH4III ACNGT 2 cut(s) 320, 491
HpyCH4V TGCA 5 cut(s) 98, 138, 304, 395, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
Hsp92II CATG 3 cut(s) 94, 124, 292
HspAI GCGC 1 cut(s) 380
KpnI GGTACC 2 cut(s) 526, 557
Kzo9I GATC 3 cut(s) 16, 361, 441
LpnPI CCDG 4 cut(s) 123, 167, 431, 554
Lsp1109I GCAGC 2 cut(s) 122, 144
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 577
MalI GATC 3 cut(s) 18, 363, 443
MboI GATC 3 cut(s) 16, 361, 441
MboII GAAGA 3 cut(s) 26, 65, 133
MfeI CAATTG 1 cut(s) 204
MluCI AATT 5 cut(s) 204, 233, 249, 478, 562
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 6 cut(s) 169, 172, 215, 218, 343, 524
MroXI GAANNNNTTC 3 cut(s) 234, 402, 425
MseI TTAA 2 cut(s) 72, 414
MslI CAYNNNNRTG 2 cut(s) 24, 434
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 418
MunI CAATTG 1 cut(s) 204
MvnI CGCG 2 cut(s) 380, 382
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeII GATC 3 cut(s) 16, 361, 441
NlaIII CATG 3 cut(s) 94, 124, 292
NlaIV GGNNCC 3 cut(s) 211, 524, 555
PdmI GAANNNNTTC 3 cut(s) 234, 402, 425
PfeI GAWTC 2 cut(s) 43, 113
PkrI GCNGC 2 cut(s) 137, 159
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 211, 524, 555
PspPI GGNCC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 524, 555
RsaNI GTAC 2 cut(s) 523, 554
RseI CAYNNNNRTG 2 cut(s) 24, 434
SaqAI TTAA 2 cut(s) 72, 414
SatI GCNGC 2 cut(s) 136, 158
Sau3AI GATC 3 cut(s) 16, 361, 441
Sau96I GGNCC 1 cut(s) 209
SetI ASST 6 cut(s) 105, 137, 159, 193, 279, 559
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 24, 434
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 5 cut(s) 204, 233, 249, 478, 562
SsiI CCGC 1 cut(s) 382
SspI AATATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 577
TaaI ACNGT 2 cut(s) 320, 491
TaqI TCGA 1 cut(s) 41
TasI AATT 5 cut(s) 204, 233, 249, 478, 562
TfiI GAWTC 2 cut(s) 43, 113
Tru1I TTAA 2 cut(s) 72, 414
Tru9I TTAA 2 cut(s) 72, 414
TseI GCWGC 2 cut(s) 135, 157
TspDTI ATGAA 4 cut(s) 301, 305, 395, 418
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 2 cut(s) 478, 562
XmnI GAANNNNTTC 3 cut(s) 234, 402, 425
XspI CTAG 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.