RLG00000008379

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000188
Physical Location & Seq
Forward (+)
29787538 .. 29789342
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008379

Sequence Viewer

Length: 1419 bp
ATGGCAAATGGGGAAGATCATAGTAGTGCTAATCATACTTCGATTCTTATAGAAGAGAAATCGGACATTCTTAACACATTGAAAGCCACCATGAGTGCAAAGCTTCGTCCTGATTCACCCATGTTTCCAACAAGCTGCATCTTCAGAGTTCCCCAGCTGCTTCGGAGACATAACGAGGAGGCATATCAACCTTTTATAGTGTCAATTGGACCCCTTCACCGAGGAGGCGAACAATTTCAATCCATAGAAATTGTGAAACAATGGTATTTATATAACCTTCTCTCAAGCATGAATATAAGTTTGCAAATATTCATTGACCGCATTGATAAGTTTTTAGAACAAAGAAAAGAGGGCATTATTGATCGGTTTGAGCAACACGCGCGGAGTTTTTATGCAGAACCACTTCATCATATTAACCGGAATGACTTCATAGAAATGATGATCCTTGATGGTTGCTTCTTGATACAACTATTTCGGAATTTTATTCACGGTGAACACAAGAATTTTAACATTAATGACCCAATATTCAACATGGATTGCATGTTCCAACATATATGCCATGACCTTTTGCTGCTAGAAAATCAAATTCCTTGGTTTGTTCTCGAGTGTTTATACGCCATTACCCGCAAGAGTTACCCTCATGACCCCTCCCTCCAGATACTAATGCTCACCGTCTTCACCTCACAACCGCCATTAGCACATAGTTGCAAGTTCTATGCAGGCTATCTTGTTGATCGAAATGATCATGATGATGATGAGATGATTTTGCACATACTTGATCTGATAAGAACTTCCATAGTTTTCCCATTCAAAGAATTTGTACCTTCTGATACAAAATACAAGAAATGTCTCTGGATCAAGAAAAAACCAAACAAAAAATATGGGTCAGAAATTCCTCCTGCTACTACTCTGTCACAGGCCGGAATTAAATTTGAAAGTGGCTCCCTTGATAGCGAAAGCATGATGAACATACAATTCAAACGCGGAGTTCTTACCATTCCACATCTAGAAATTGGAGAACTGACCGAGCCAATGTTCAGGAACCTTATTGCGTTTGAGCAATGCTACCATGGTCGTTCTCATCACATAACTTCTTATGCTGTCTTAATGGATAAACTCCTCGGTTCGAGCAGGGATATGGAGTTTCTTTGTGAGAAGAGAATAATAAGTGCCTGGCTTAGCGCTGAGGATGGTTCTCAGTTTTTCAACAAGCTTCGCAATGACACCTTGCTCAAAAAGTTCTTCTATGATGAACTCTGTGCTGAAGTGAATAGATACTATGAAGTTACATGGAACAAGTGGCTAGAAAAGTTGAAGAGTGAGTATTTTGCTAACCCATGGACAGTTATTTCATTGATTGCAGCAAGTATCCTTCTCGGTCTCACCATAGTGCAGACCATATATGCTGTTCGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

473

Amino Acids

55.18

Weight (kDa)

6.26

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 47 - 459 8.6e-107 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 380, 382, 984
AciI CCGC 5 cut(s) 319, 382, 625, 689, 984
AclWI GGATC 2 cut(s) 436, 863
AcsI RAATTY 6 cut(s) 478, 502, 585, 815, 891, 929
AcuI CTGAAG 2 cut(s) 127, 1284
AfaI GTAC 1 cut(s) 822
AfeI AGCGCT 1 cut(s) 1183
AgsI TTSAA 8 cut(s) 82, 239, 529, 811, 935, 979, 1207, 1315
AjnI CCWGG 1 cut(s) 1172
AleI CACNNNNGTG 1 cut(s) 1388
AloI GAACNNNNNNTCC 2 cut(s) 527, 559
AluBI AGCT 4 cut(s) 103, 135, 157, 1213
AluI AGCT 4 cut(s) 103, 135, 157, 1213
Alw26I GTCTC 3 cut(s) 160, 854, 1385
AlwI GGATC 2 cut(s) 436, 863
Ama87I CYCGRG 1 cut(s) 602
Aor51HI AGCGCT 1 cut(s) 1183
AoxI GGCC 1 cut(s) 918
ApeKI GCWGC 4 cut(s) 135, 157, 571, 1361
ApoI RAATTY 6 cut(s) 478, 502, 585, 815, 891, 929
AseI ATTAAT 1 cut(s) 513
Asp700I GAANNNNTTC 3 cut(s) 234, 402, 425
AspLEI GCGC 2 cut(s) 382, 1184
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 6 cut(s) 108, 209, 503, 661, 670, 1375
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 667
BbvCI CCTCAGC 1 cut(s) 1185
BbvI GCAGC 4 cut(s) 122, 144, 558, 1373
BccI CCATC 2 cut(s) 443, 1184
BciT130I CCWGG 1 cut(s) 1174
BciVI GTATCC 1 cut(s) 1379
BclI TGATCA 1 cut(s) 742
BcoDI GTCTC 3 cut(s) 160, 854, 1385
BfaI CTAG 3 cut(s) 575, 1007, 1304
BfoI RGCGCY 1 cut(s) 1185
BfuI GTATCC 1 cut(s) 1379
BisI GCNGC 4 cut(s) 136, 158, 572, 1362
BlpI GCTNAGC 1 cut(s) 1178
BlsI GCNGC 4 cut(s) 137, 159, 573, 1363
Bme1390I CCNGG 1 cut(s) 1174
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 3 cut(s) 211, 943, 1043
BmrFI CCNGG 1 cut(s) 1174
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 667
BplI GAGNNNNNCTC 2 cut(s) 622, 654
BpmI CTGGAG 1 cut(s) 638
Bpu10I CCTNAGC 1 cut(s) 1185
Bpu1102I GCTNAGC 1 cut(s) 1178
BpuEI CTTGAG 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 1385
BsaJI CCNNGG 5 cut(s) 220, 590, 1069, 1120, 1337
BsaWI WCCGGW 1 cut(s) 417
Bse3DI GCAATG 2 cut(s) 1067, 1225
BseBI CCWGG 1 cut(s) 1174
BseDI CCNNGG 5 cut(s) 220, 590, 1069, 1120, 1337
BseGI GGATG 1 cut(s) 1195
BseMI GCAATG 2 cut(s) 1067, 1225
BseMII CTCAG 2 cut(s) 1176, 1211
BseRI GAGGAG 3 cut(s) 191, 237, 1109
BseXI GCAGC 4 cut(s) 122, 144, 558, 1373
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 1412
Bsh1236I CGCG 3 cut(s) 380, 382, 984
BshFI GGCC 1 cut(s) 920
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 2 cut(s) 418, 921
BsmAI GTCTC 3 cut(s) 160, 854, 1385
BsnI GGCC 1 cut(s) 920
Bso31I GGTCTC 1 cut(s) 1385
BsoBI CYCGRG 1 cut(s) 602
Bsp143I GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
Bsp1720I GCTNAGC 1 cut(s) 1178
Bsp19I CCATGG 2 cut(s) 1069, 1337
BspACI CCGC 5 cut(s) 319, 382, 625, 689, 984
BspANI GGCC 1 cut(s) 920
BspCNI CTCAG 2 cut(s) 1177, 1210
BspFNI CGCG 3 cut(s) 380, 382, 984
BspHI TCATGA 2 cut(s) 640, 745
BspLI GGNNCC 3 cut(s) 211, 943, 1043
BspPI GGATC 2 cut(s) 436, 863
BspTNI GGTCTC 1 cut(s) 1385
BsrDI GCAATG 2 cut(s) 1067, 1225
BssECI CCNNGG 5 cut(s) 220, 590, 1069, 1120, 1337
BssMI GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
BssT1I CCWWGG 3 cut(s) 590, 1069, 1337
Bst2UI CCWGG 1 cut(s) 1174
Bst4CI ACNGT 3 cut(s) 491, 673, 1345
Bst6I CTCTTC 3 cut(s) 48, 1151, 1310
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 3 cut(s) 1178, 1185, 1197
BstDSI CCRYGG 2 cut(s) 1069, 1337
BstF5I GGATG 1 cut(s) 1195
BstFNI CGCG 3 cut(s) 380, 382, 984
BstH2I RGCGCY 1 cut(s) 1185
BstHHI GCGC 2 cut(s) 382, 1184
BstKTI GATC 7 cut(s) 19, 364, 444, 736, 745, 781, 858
BstMAI GTCTC 3 cut(s) 160, 854, 1385
BstMBI GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 1174
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 1 cut(s) 1172
BstUI CGCG 3 cut(s) 380, 382, 984
BstV1I GCAGC 4 cut(s) 122, 144, 558, 1373
BstV2I GAAGAC 1 cut(s) 667
BsuI GTATCC 1 cut(s) 1379
BsuRI GGCC 1 cut(s) 920
BtgI CCRYGG 2 cut(s) 1069, 1337
BtsCI GGATG 1 cut(s) 1195
Cac8I GCNNGC 1 cut(s) 721
CciI TCATGA 2 cut(s) 640, 745
CfoI GCGC 2 cut(s) 382, 1184
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 821
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 3 cut(s) 1178, 1185, 1197
DpnI GATC 7 cut(s) 18, 363, 443, 735, 744, 780, 857
DpnII GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
Eam1104I CTCTTC 3 cut(s) 48, 1151, 1310
EarI CTCTTC 3 cut(s) 48, 1151, 1310
Eco130I CCWWGG 3 cut(s) 590, 1069, 1337
Eco31I GGTCTC 1 cut(s) 1385
Eco47I GGWCC 1 cut(s) 209
Eco47III AGCGCT 1 cut(s) 1183
Eco57I CTGAAG 2 cut(s) 127, 1284
Eco88I CYCGRG 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 1172
EcoT14I CCWWGG 3 cut(s) 590, 1069, 1337
ErhI CCWWGG 3 cut(s) 590, 1069, 1337
FauI CCCGC 1 cut(s) 632
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 4 cut(s) 136, 158, 572, 1362
FokI GGATG 1 cut(s) 1202
Fsp4HI GCNGC 4 cut(s) 136, 158, 572, 1362
FspBI CTAG 3 cut(s) 575, 1007, 1304
GlaI GCGC 2 cut(s) 381, 1183
GluI GCNGC 4 cut(s) 136, 158, 572, 1362
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 1185
HaeIII GGCC 1 cut(s) 920
HapII CCGG 2 cut(s) 418, 921
HhaI GCGC 2 cut(s) 382, 1184
Hin6I GCGC 2 cut(s) 380, 1182
HinP1I GCGC 2 cut(s) 380, 1182
HindIII AAGCTT 2 cut(s) 101, 1211
HinfI GANTC 2 cut(s) 43, 113
HpaII CCGG 2 cut(s) 418, 921
HphI GGTGA 6 cut(s) 108, 209, 503, 661, 670, 1375
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 7 cut(s) 64, 146, 165, 477, 783, 829, 889
Hpy8I GTNNAC 1 cut(s) 494
HpyAV CCTTC 4 cut(s) 224, 287, 834, 1382
HpyCH4III ACNGT 3 cut(s) 491, 673, 1345
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 3 cut(s) 1178, 1185, 1197
HspAI GCGC 2 cut(s) 380, 1182
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
LmnI GCTCC 1 cut(s) 947
Lsp1109I GCAGC 4 cut(s) 122, 144, 558, 1373
LweI GCATC 1 cut(s) 147
MaeI CTAG 3 cut(s) 575, 1007, 1304
MaeIII GTNAC 3 cut(s) 632, 912, 1285
MalI GATC 7 cut(s) 18, 363, 443, 735, 744, 780, 857
MboI GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
MboII GAAGA 7 cut(s) 26, 65, 133, 667, 1168, 1234, 1327
MfeI CAATTG 1 cut(s) 204
MmeI TCCRAC 2 cut(s) 152, 571
MroXI GAANNNNTTC 3 cut(s) 234, 402, 425
MseI TTAA 6 cut(s) 72, 414, 507, 513, 927, 1106
MslI CAYNNNNRTG 4 cut(s) 24, 434, 750, 1388
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 2 cut(s) 418, 921
MspR9I CCNGG 1 cut(s) 1174
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 1174
MvnI CGCG 3 cut(s) 380, 382, 984
MwoI GCNNNNNNNGC 1 cut(s) 379
NcoI CCATGG 2 cut(s) 1069, 1337
NdeII GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
NlaIV GGNNCC 3 cut(s) 211, 943, 1043
NmuCI GTSAC 1 cut(s) 912
NspI RCATGY 1 cut(s) 544
OliI CACNNNNGTG 1 cut(s) 1388
PaeR7I CTCGAG 1 cut(s) 602
PagI TCATGA 2 cut(s) 640, 745
PdmI GAANNNNTTC 3 cut(s) 234, 402, 425
PfeI GAWTC 2 cut(s) 43, 113
PkrI GCNGC 4 cut(s) 137, 159, 573, 1363
PshBI ATTAAT 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 1172
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 1172
PspN4I GGNNCC 3 cut(s) 211, 943, 1043
PspPI GGNCC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
RseI CAYNNNNRTG 4 cut(s) 24, 434, 750, 1388
SaqAI TTAA 6 cut(s) 72, 414, 507, 513, 927, 1106
SatI GCNGC 4 cut(s) 136, 158, 572, 1362
Sau3AI GATC 7 cut(s) 16, 361, 441, 733, 742, 778, 855
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 1174
SfaNI GCATC 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 602
SinI GGWCC 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 4 cut(s) 24, 434, 750, 1388
SmlI CTYRAG 2 cut(s) 283, 602
SmoI CTYRAG 2 cut(s) 283, 602
SsiI CCGC 5 cut(s) 319, 382, 625, 689, 984
SspI AATATT 2 cut(s) 309, 525
SspMI CTAG 3 cut(s) 575, 1007, 1304
StyD4I CCNGG 1 cut(s) 1172
StyI CCWWGG 3 cut(s) 590, 1069, 1337
TaaI ACNGT 3 cut(s) 491, 673, 1345
TaqI TCGA 4 cut(s) 41, 603, 736, 1127
TaqII GACCGA 2 cut(s) 1040, 1367
TfiI GAWTC 2 cut(s) 43, 113
Tru1I TTAA 6 cut(s) 72, 414, 507, 513, 927, 1106
Tru9I TTAA 6 cut(s) 72, 414, 507, 513, 927, 1106
TseFI GTSAC 1 cut(s) 912
TseI GCWGC 4 cut(s) 135, 157, 571, 1361
Tsp45I GTSAC 1 cut(s) 912
TspDTI ATGAA 8 cut(s) 301, 305, 395, 418, 980, 1266, 1296, 1341
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 6 cut(s) 478, 502, 585, 815, 891, 929
XbaI TCTAGA 1 cut(s) 1006
XceI RCATGY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 602
XmnI GAANNNNTTC 3 cut(s) 234, 402, 425
XspI CTAG 3 cut(s) 575, 1007, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.