Prupe.5G029200_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000188
Physical Location & Seq
Forward (+)
3431260 .. 3435335
4076 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G029200.1

Sequence Viewer

Length: 315 bp
ATGGCTAACTTCATCGACTCTAGAGAGGATATAGATTTTCTTTGTGAGAAAGGAATGTTGGCCAATTGGTTGAACCCGGAAGATGCTGCCCAATTCTTCAACAAGCTTTACAATAACACCATCGTCATGGGGTATTACTACAGTGATCTCTCCGATAATATGAATAACTATTACAATACTAAATGGCACAAGTTTATGGAAATATTGAGGCGTGACTATTTTTCTACCCTATGGACAATCGTCTCTGTCATCGCGGCCTTTATCCTCCTCGTCCTCACCCTAGTGCAGACCTTATATACTATTCAGTGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

105

Amino Acids

12.46

Weight (kDa)

4.65

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 254
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 60
AgsI TTSAA 2 cut(s) 73, 100
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 3 cut(s) 60, 255, 308
ApeKI GCWGC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 268
BalI TGGCCA 1 cut(s) 62
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 2 cut(s) 21, 281
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 2 cut(s) 87, 255
BlsI GCNGC 2 cut(s) 88, 256
Bme1390I CCNGG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 73
BoxI GACNNNNGTC 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 3 cut(s) 62, 257, 310
BsiSI CCGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsnI GGCC 3 cut(s) 62, 257, 310
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 62, 257, 310
BspFNI CGCG 1 cut(s) 254
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 143
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 1 cut(s) 145
BstPAI GACNNNNGTC 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 139
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuRI GGCC 3 cut(s) 62, 257, 310
BtgZI GCGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 148, 311
CviAII CATG 1 cut(s) 127
CviJI RGCY 5 cut(s) 5, 62, 106, 257, 310
CviKI_1 RGCY 5 cut(s) 5, 62, 106, 257, 310
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 1 cut(s) 130
FaiI YATR 7 cut(s) 32, 128, 161, 197, 232, 295, 297
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 87, 255
Fsp4HI GCNGC 2 cut(s) 87, 255
FspBI CTAG 2 cut(s) 21, 281
GluI GCNGC 2 cut(s) 87, 255
HaeIII GGCC 3 cut(s) 62, 257, 310
HapII CCGG 1 cut(s) 77
Hin1II CATG 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 286
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 1 cut(s) 90
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 21, 281
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 88, 92
MfeI CAATTG 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 64, 92
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 5 cut(s) 19, 201, 275, 278, 284
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 313
MslI CAYNNNNRTG 2 cut(s) 125, 281
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 64
MvnI CGCG 1 cut(s) 254
NciI CCSGG 1 cut(s) 77
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 212
OliI CACNNNNGTG 1 cut(s) 281
PkrI GCNGC 2 cut(s) 88, 256
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PshAI GACNNNNGTC 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 125, 281
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 2 cut(s) 87, 255
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 77
SetI ASST 2 cut(s) 108, 293
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 125, 281
Sse9I AATT 2 cut(s) 64, 92
SsiI CCGC 1 cut(s) 254
SspI AATATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 21, 281
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 15
TasI AATT 2 cut(s) 64, 92
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 2 cut(s) 148, 311
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 2 cut(s) 148, 311
XbaI TCTAGA 1 cut(s) 20
XspI CTAG 2 cut(s) 21, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.