MD00G1110800.v1.1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000188
Physical Location & Seq
Reverse (-)
23217949 .. 23218985
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1110800.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGCTGAGTTTGAGAAAAAAGCTCGTGATTTTTATGCGCATCCGTTTGATCCTCTGATGAAAATGGAGTTTCTCCACATGATGATACTTGATGGTTGCTTCCTAGTACAAATATTTAGGAAGTTTGTGAATAAGGAACAGAGGGACATTAATGACCCTTTATTCAACATGGATTGCATGTTCCAGTACATATGCCATGACCTTTTGCTCTTAGAAAATCAGATTCCTTGGTTTGTCCTCCAGTCCATGTATGAGCTCACCGTGAAGTATTACCAGAACCATGAGCGCTGCCTCTCGGAACTCATCCTCACCGCGCTCAGCTCACAACCACAACTGTCCCATAACTGCCGGTGGTATCTGGATCATCTAAGAGGAAATAGTTACAAAGAGGACGAAAGTGTGCTCCACATTCTCGATCTCATAAGAACTTCCATAGTTTTCTCATTCACCGAACGCTATGAGAAACCTCCCTTCGATGCAAAGATACAACTGATAGCTTCAGCAACTGCTCTTTCTGAGGCCGGCATTAGATTCAAAATGAGCTCCGATGAATGTAAAAGCATAATGAACATCGAATGCGAGAATGGGGAACCTGATCGCCTTGGAGCAATGCTGTGTTATGGTCGTTCGCATAAAATCACATCTTATGCCGTTCTGATGGATAACCTCCTCGGCTCTAGCAACGATATAAAATTTCTCTGCGACAAGGAAATTATAGGTAACTGGCTGAGCGCTGAAACTGGTTCTGAGTTCTTCAGCAAGCTTTACTGCGACACGGTGCTTACTTATTTCTACTATGGTGGACTCTGTACTCGAGTGAAGGAATACCAAACTGCATTGAGGAGGTGGCGAGAAATATTCAAGCGTAACTATTGGTCAGATCCATGGAAAGCCACCTCCTGGACTGTAGCAAGTATCCTTCTGATTCTCACCTTAGTGCAGACTGCATACACCATTAAGCAATACTATTCTCCTCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

328

Amino Acids

38.49

Weight (kDa)

5.94

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 196 3.2e-39 Plant protein of unknown function
DUF247 PF03140 211 - 310 2.6e-21 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 39
AccB7I CCANNNNNTGG 1 cut(s) 900
AccII CGCG 1 cut(s) 314
AciI CCGC 1 cut(s) 312
AclWI GGATC 3 cut(s) 44, 369, 875
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 2 cut(s) 483, 739
AfaI GTAC 3 cut(s) 108, 188, 811
AfeI AGCGCT 2 cut(s) 287, 733
AfiI CCNNNNNNNGG 1 cut(s) 900
AgsI TTSAA 3 cut(s) 166, 535, 862
AjnI CCWGG 1 cut(s) 899
AleI CACNNNNGTG 1 cut(s) 935
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 6 cut(s) 23, 256, 321, 497, 543, 763
AluI AGCT 6 cut(s) 23, 256, 321, 497, 543, 763
Alw21I GWGCWC 3 cut(s) 258, 405, 545
AlwI GGATC 3 cut(s) 44, 369, 875
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 813
Aor51HI AGCGCT 2 cut(s) 287, 733
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 692
AseI ATTAAT 1 cut(s) 150
AspLEI GCGC 4 cut(s) 40, 288, 316, 734
AsuHPI GGTGA 4 cut(s) 250, 301, 439, 922
AvaI CYCGRG 1 cut(s) 813
AxyI CCTNAGG 1 cut(s) 975
BanII GRGCYC 2 cut(s) 258, 545
BauI CACGAG 1 cut(s) 24
Bbv12I GWGCWC 3 cut(s) 258, 405, 545
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 86, 652
BceAI ACGGC 1 cut(s) 635
BciT130I CCWGG 1 cut(s) 901
BciVI GTATCC 1 cut(s) 926
BfaI CTAG 2 cut(s) 104, 678
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 2 cut(s) 289, 735
BfuI GTATCC 1 cut(s) 926
BisI GCNGC 1 cut(s) 289
BlpI GCTNAGC 2 cut(s) 317, 728
BlsI GCNGC 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 901
BmeT110I CYCGRG 1 cut(s) 813
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 1 cut(s) 901
BmsI GCATC 2 cut(s) 49, 466
BpmI CTGGAG 1 cut(s) 224
Bpu1102I GCTNAGC 2 cut(s) 317, 728
BsaJI CCNNGG 4 cut(s) 227, 601, 670, 884
Bsc4I CCNNNNNNNGG 1 cut(s) 900
Bse118I RCCGGY 2 cut(s) 348, 521
Bse1I ACTGG 4 cut(s) 184, 241, 728, 745
Bse21I CCTNAGG 1 cut(s) 975
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 901
BseDI CCNNGG 4 cut(s) 227, 601, 670, 884
BseGI GGATG 2 cut(s) 40, 303
BseLI CCNNNNNNNGG 1 cut(s) 900
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 4 cut(s) 331, 507, 719, 738
BseNI ACTGG 4 cut(s) 184, 241, 728, 745
BseRI GAGGAG 3 cut(s) 659, 856, 963
BseXI GCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 959
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 3 cut(s) 258, 405, 545
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 2 cut(s) 349, 522
BslFI GGGAC 2 cut(s) 158, 322
BslI CCNNNNNNNGG 1 cut(s) 900
BsmFI GGGAC 2 cut(s) 158, 322
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 1 cut(s) 521
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 3 cut(s) 258, 405, 545
Bsp143I GATC 5 cut(s) 49, 361, 415, 595, 880
Bsp1720I GCTNAGC 2 cut(s) 317, 728
Bsp19I CCATGG 1 cut(s) 884
BspACI CCGC 1 cut(s) 312
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 4 cut(s) 330, 508, 720, 739
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 591
BspPI GGATC 3 cut(s) 44, 369, 875
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 2 cut(s) 348, 521
BsrI ACTGG 4 cut(s) 184, 241, 728, 745
BssAI RCCGGY 2 cut(s) 348, 521
BssECI CCNNGG 4 cut(s) 227, 601, 670, 884
BssMI GATC 5 cut(s) 49, 361, 415, 595, 880
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 3 cut(s) 227, 601, 884
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 4 cut(s) 262, 336, 778, 907
BstC8I GCNNGC 2 cut(s) 523, 761
BstDEI CTNAG 9 cut(s) 6, 211, 317, 368, 516, 728, 747, 934, 975
BstDSI CCRYGG 1 cut(s) 884
BstF5I GGATG 2 cut(s) 40, 303
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 2 cut(s) 289, 735
BstHHI GCGC 4 cut(s) 40, 288, 316, 734
BstKTI GATC 5 cut(s) 52, 364, 418, 598, 883
BstMBI GATC 5 cut(s) 49, 361, 415, 595, 880
BstNI CCWGG 1 cut(s) 901
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 899
BstSFI CTRYAG 1 cut(s) 906
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
Bsu36I CCTNAGG 1 cut(s) 975
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 884
BtsCI GGATG 2 cut(s) 40, 303
Cac8I GCNNGC 2 cut(s) 523, 761
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 4 cut(s) 40, 288, 316, 734
Cfr10I RCCGGY 2 cut(s) 348, 521
Csp6I GTAC 3 cut(s) 107, 187, 810
CviAII CATG 7 cut(s) 79, 169, 178, 197, 247, 281, 885
CviQI GTAC 3 cut(s) 107, 187, 810
DdeI CTNAG 9 cut(s) 6, 211, 317, 368, 516, 728, 747, 934, 975
DpnI GATC 5 cut(s) 51, 363, 417, 597, 882
DpnII GATC 5 cut(s) 49, 361, 415, 595, 880
Ecl136II GAGCTC 2 cut(s) 256, 543
Eco130I CCWWGG 3 cut(s) 227, 601, 884
Eco24I GRGCYC 2 cut(s) 258, 545
Eco47III AGCGCT 2 cut(s) 287, 733
Eco53kI GAGCTC 2 cut(s) 256, 543
Eco57I CTGAAG 2 cut(s) 483, 739
Eco81I CCTNAGG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 813
EcoICRI GAGCTC 2 cut(s) 256, 543
EcoRII CCWGG 1 cut(s) 899
EcoT14I CCWWGG 3 cut(s) 227, 601, 884
EcoT38I GRGCYC 2 cut(s) 258, 545
ErhI CCWWGG 3 cut(s) 227, 601, 884
FaeI CATG 7 cut(s) 82, 172, 181, 200, 250, 284, 888
FaqI GGGAC 2 cut(s) 158, 322
FatI CATG 7 cut(s) 78, 168, 177, 196, 246, 280, 884
FauNDI CATATG 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 2 cut(s) 27, 290
FriOI GRGCYC 2 cut(s) 258, 545
Fsp4HI GCNGC 1 cut(s) 289
FspAI RTGCGCAY 1 cut(s) 39
FspBI CTAG 2 cut(s) 104, 678
FspI TGCGCA 1 cut(s) 39
GlaI GCGC 4 cut(s) 39, 287, 315, 733
GluI GCNGC 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 289, 735
HaeIII GGCC 1 cut(s) 521
HapII CCGG 2 cut(s) 349, 522
HhaI GCGC 4 cut(s) 40, 288, 316, 734
Hin1II CATG 7 cut(s) 82, 172, 181, 200, 250, 284, 888
Hin6I GCGC 4 cut(s) 38, 286, 314, 732
HinP1I GCGC 4 cut(s) 38, 286, 314, 732
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 4 cut(s) 223, 531, 804, 925
HpaII CCGG 2 cut(s) 349, 522
HphI GGTGA 4 cut(s) 250, 301, 439, 922
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 9 cut(s) 57, 222, 298, 517, 547, 657, 748, 880, 924
Hpy188III TCNNGA 3 cut(s) 26, 359, 413
Hpy8I GTNNAC 1 cut(s) 803
HpyAV CCTTC 3 cut(s) 481, 814, 929
HpyCH4III ACNGT 4 cut(s) 262, 336, 778, 907
HpyCH4V TGCA 5 cut(s) 177, 479, 836, 940, 947
HpyF3I CTNAG 9 cut(s) 6, 211, 317, 368, 516, 728, 747, 934, 975
Hsp92II CATG 7 cut(s) 82, 172, 181, 200, 250, 284, 888
HspAI GCGC 4 cut(s) 38, 286, 314, 732
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
Kzo9I GATC 5 cut(s) 49, 361, 415, 595, 880
LmnI GCTCC 3 cut(s) 408, 548, 605
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 2 cut(s) 49, 466
MaeI CTAG 2 cut(s) 104, 678
MaeIII GTNAC 3 cut(s) 380, 719, 866
MalI GATC 5 cut(s) 51, 363, 417, 597, 882
MboI GATC 5 cut(s) 49, 361, 415, 595, 880
MboII GAAGA 1 cut(s) 745
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 3 cut(s) 258, 405, 545
MluCI AATT 2 cut(s) 692, 711
MlyI GAGTC 1 cut(s) 798
MroNI GCCGGC 1 cut(s) 521
MseI TTAA 2 cut(s) 150, 957
MslI CAYNNNNRTG 1 cut(s) 935
MspI CCGG 2 cut(s) 349, 522
MspR9I CCNGG 1 cut(s) 901
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 1 cut(s) 901
MvnI CGCG 1 cut(s) 314
NaeI GCCGGC 1 cut(s) 523
NcoI CCATGG 1 cut(s) 884
NdeI CATATG 1 cut(s) 191
NdeII GATC 5 cut(s) 49, 361, 415, 595, 880
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 7 cut(s) 82, 172, 181, 200, 250, 284, 888
NlaIV GGNNCC 1 cut(s) 591
NmeAIII GCCGAG 1 cut(s) 651
NsbI TGCGCA 1 cut(s) 39
NspI RCATGY 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 813
PctI GAATGC 1 cut(s) 581
PdiI GCCGGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 223, 531, 925
PflMI CCANNNNNTGG 1 cut(s) 900
PfoI TCCNGGA 1 cut(s) 899
PkrI GCNGC 1 cut(s) 290
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
PshBI ATTAAT 1 cut(s) 150
Psp124BI GAGCTC 2 cut(s) 258, 545
Psp6I CCWGG 1 cut(s) 899
PspGI CCWGG 1 cut(s) 899
PspN4I GGNNCC 1 cut(s) 591
PspXI VCTCGAGB 1 cut(s) 813
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 880
RsaI GTAC 3 cut(s) 108, 188, 811
RsaNI GTAC 3 cut(s) 107, 187, 810
RseI CAYNNNNRTG 1 cut(s) 935
SacI GAGCTC 2 cut(s) 258, 545
SaqAI TTAA 2 cut(s) 150, 957
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 5 cut(s) 49, 361, 415, 595, 880
SchI GAGTC 1 cut(s) 798
ScrFI CCNGG 1 cut(s) 901
SduI GDGCHC 3 cut(s) 258, 405, 545
SfaNI GCATC 2 cut(s) 49, 466
SfcI CTRYAG 1 cut(s) 906
Sfr274I CTCGAG 1 cut(s) 813
SlaI CTCGAG 1 cut(s) 813
SmiMI CAYNNNNRTG 1 cut(s) 935
SmlI CTYRAG 1 cut(s) 813
SmoI CTYRAG 1 cut(s) 813
Sse9I AATT 2 cut(s) 692, 711
SsiI CCGC 1 cut(s) 312
SspI AATATT 2 cut(s) 114, 858
SspMI CTAG 2 cut(s) 104, 678
SstI GAGCTC 2 cut(s) 258, 545
StyD4I CCNGG 1 cut(s) 899
StyI CCWWGG 3 cut(s) 227, 601, 884
TaaI ACNGT 4 cut(s) 262, 336, 778, 907
TaqI TCGA 4 cut(s) 414, 474, 573, 814
TasI AATT 2 cut(s) 692, 711
TatI WGTACW 3 cut(s) 106, 186, 809
TfiI GAWTC 3 cut(s) 223, 531, 925
Tru1I TTAA 2 cut(s) 150, 957
Tru9I TTAA 2 cut(s) 150, 957
TseI GCWGC 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 74, 564, 581
TspGWI ACGGA 1 cut(s) 33
Van91I CCANNNNNTGG 1 cut(s) 900
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 1 cut(s) 692
XceI RCATGY 1 cut(s) 181
XhoI CTCGAG 1 cut(s) 813
XspI CTAG 2 cut(s) 104, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.