RchiOBHm_Chr2g0111831

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000188
Physical Location & Seq
Reverse (-)
23455349 .. 23457270
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48540

Sequence Viewer

Length: 1386 bp
ATGGCAAATGATGGCAGTAGAACTATTGATGTTGAAGCATTGGAGAAGAGCATTGATGAAAAGCTTCGCAGTGATTCACCATTGTCTGCCAAATGTTGTATATTCAAAGTTCCAGAGGTGCTGAGGAGACATAAACCAGAGGCATATCAACCTGATGTTGTTTCAATCGGACCCTTTCATCACCAAAGTGGTAAGAAATTTGAACACATGGAAAATGTGAAACACTGGTATTTAAAAAATCTTCTTTCAAGATTGGGTGTAAGTTTGAAAACTTTGATTGAGCGCATTGATGTTGTTGAGTTTGGGAGAGAAGCTCGTGGTTTATATGCAGATCCATTGAATGAACTCAACCAGAATGACTTCATAGAAATGATGATACTTGATGGTTGCTTCCTTTTGGAATTGTTTTGGAGATGTCAAATTAACAACCTTAAGCTTTTCTTGACCACCATAGAAGATGTCAATGCTGAAGTTGAACTCGGTATTGGAATGCAACAAGTAGATGCTTGGAACCAAATACTAGATATTGATAATGACTCCATATTCAACATGCATTGCATGGTCCAATATCTATGTCATGACCTTTTGCTGCTAGAAAATCAACTACCTTGGTTTGTCCTCGAGCGTTTATATAGCCTTACCATAGGACTAGGTAAACCTAACCCTCAGACCTCCCTCATTCATCTTGTGCTCAGTTTCTTCAGCACAGTCTCATCTCTTGCCCAACATTGCGCTTGCTATTCCAGTTGTAGTCAAAATAATATCCTACACATACTTGATTTGATTAGAAGAACAATTGTTGACCCTTTCGAAGAGTGTAAATCTAGCACAAACACGGAGACAAATTTGCTTTCTGCCACTATTCTCTCAGAGGCTGGCGTTGAATTTAAACAAGGTTCCATTGATGGCAACATAATGAACATTGATTTCAAAAATGGGGTTCTCACAATTCCAAAATTGGCAATTGCAGAGCTAACCGAACCTCTCTTCAGGAACCTTATTGCCTTTGAGCAATGCTATCATCACTGCGAGCATAAAGTAACATCATATGCCCTTTTAATGTCTAACCTCATTGCTTCCAGTAAGGATGCTCATTTTCTCCGTAAGAAAGAAATACTAAGCAATTGGTTGAGTGCTGAAGATGCTTTCAGTTTCTTCGATAAGCTTTACAGTGACACATTGCTTCGGGATTTTTGCTATGGCGGGCTCTGCGCCGAAGTGAATGAATATCACAAACATAGAAGAAACAAGTGGCGAGCAAAATTAAAGCGTGATCATTGTTCTAACCCATGGAAAATCATTTCTTTGGTTGCAGCCTTTATCCTTCTGGTTCTCACCACGTTGCAGACCGCATTTACCATTCAGCAATACTATTTTCCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

461

Amino Acids

53.01

Weight (kDa)

5.95

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 34 - 445 6.4e-109 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02500 FvH4_4g03110 FvH4_5g11900 FvH4_5g11910 FvH4_5g19510 FvH4_6g53141 FvH4_6g53141 FvH4_6g53143 FvH4_6g53143 FvH4_6g53260 FvH4_6g53260 FvH4_6g53260 FvH4_6g53280
malus_domestica MD00G1110800.v1.1 MD00G1111300.v1.1 MD08G1225300.v1.1 MD08G1225500.v1.1 MD08G1225700.v1.1 MD09G1013500.v1.1 MD09G1013700.v1.1 MD09G1013800.v1.1 MD09G1014000.v1.1
prunus_persica Prupe.1G028300_v2.0.a1 Prupe.1G029300_v2.0.a1 Prupe.1G029400_v2.0.a1 Prupe.1G029800_v2.0.a1 Prupe.1G165900_v2.0.a1 Prupe.3G303500_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029100_v2.0.a1 Prupe.5G029200_v2.0.a1 Prupe.7G037400_v2.0.a1
pyrus_communis pycom08g19660 pycom08g19690 pycom08g19710 pycom08g19720 pycom111g01160 pycom111g01170 pycom17g01140
rosa_chinensis RchiOBHm_Chr2g0111831 RchiOBHm_Chr2g0138211 RchiOBHm_Chr2g0163091 RchiOBHm_Chr2g0175051 RchiOBHm_Chr2g0175141 RchiOBHm_Chr2g0175171 RchiOBHm_Chr2g0175191 RchiOBHm_Chr3g0483151 RchiOBHm_Chr3g0483161 RchiOBHm_Chr3g0483171 RchiOBHm_Chr4g0389941 RchiOBHm_Chr4g0411021 RchiOBHm_Chr4g0411031 RchiOBHm_Chr4g0411041 RchiOBHm_Chr5g0041861 RchiOBHm_Chr5g0058261 RchiOBHm_Chr5g0065661 RchiOBHm_Chr5g0070431 RchiOBHm_Chr7g0185221 RchiOBHm_Chr7g0185581 RchiOBHm_Chr7g0185591 RchiOBHm_Chr7g0185611 RchiOBHm_Chr7g0185641
rosa_laevigata RLG00000004895 RLG00000004896 RLG00000004897 RLG00000008379 RLG00000021370 RLG00000022309 RLG00000034099 RLG00000035811 RLG00000036132 RLG00000036450
rosa_multiflora Rmu_co8229993.1_g000001 Rmu_co8360165.1_g000001 Rmu_co8461695.1_g000001 Rmu_sc0000213.1_g000004 Rmu_sc0000235.1_g000066 Rmu_sc0000367.1_g000060 Rmu_sc0000861.1_g000057 Rmu_sc0000861.1_g000068 Rmu_sc0001244.1_g000011 Rmu_sc0001244.1_g000013 Rmu_sc0001323.1_g000018 Rmu_sc0002180.1_g000032 Rmu_sc0002280.1_g000009 Rmu_sc0003226.1_g000095 Rmu_sc0003226.1_g000096 Rmu_sc0003555.1_g000010 Rmu_sc0003555.1_g000018 Rmu_sc0003920.1_g000011 Rmu_sc0003984.1_g000012 Rmu_sc0004336.1_g000026 Rmu_sc0006027.1_g000005 Rmu_sc0006570.1_g000004 Rmu_sc0007961.1_g000010 Rmu_sc0008747.1_g000001 Rmu_sc0008834.1_g000005 Rmu_sc0010190.1_g000004 Rmu_sc0010190.1_g000007 Rmu_sc0010190.1_g000008 Rmu_sc0010642.1_g000012 Rmu_sc0011497.1_g000002
rosa_roxburghii Rroxscaffold_1G00010770 Rroxscaffold_1G00010780 Rroxscaffold_1G00011860 Rroxscaffold_1G00015470 Rroxscaffold_1G00038670 Rroxscaffold_2G00077520 Rroxscaffold_2G00077550 Rroxscaffold_2G00106420 Rroxscaffold_3G00268750 Rroxscaffold_3G00268770 Rroxscaffold_3G00268780 Rroxscaffold_3G00268790 Rroxscaffold_3G00269130 Rroxscaffold_5G00336020 Rroxscaffold_5G00343150 Rroxscaffold_5G00355700
rosa_rugosa Rorug02G0500300 Rorug02G0581200 Rorug03G0204700 Rorug03G0327300 Rorug05G0196100 Rorug05G0196400 Rorug05G0405900 Rorug05G0406000 Rorug06G0467000 Rorug06G0467000 Rorug06G0470200 Rorug06G0470200 Rorug07G0180500
rosa_samantha Rh2AG566700 Rh2AG661900 Rh2AG663200 Rh3CG286400 Rh3CG286500 Rh3CG366100 Rh4DG024200 Rh4DG076600 Rh4DG160000 Rh4DG160100 Rh5BG286800 Rh5DG295500 Rh5DG461000 Rh7DG072100 Rh7DG075500
rosa_wichuraiana Rw1G002310 Rw1G015820 Rw2G046920 Rw2G054280 Rw3G022880 Rw3G029170 Rw4G002330 Rw4G013670 Rw5G026420 Rw5G026440 Rw5G040490 Rw5G042130 Rw7G006300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 1203, 1350
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 3 cut(s) 197, 844, 884
AcuI CTGAAG 4 cut(s) 489, 685, 973, 1158
AflII CTTAAG 1 cut(s) 431
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 5 cut(s) 64, 314, 436, 973, 1165
AluI AGCT 5 cut(s) 64, 314, 436, 973, 1165
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 3 cut(s) 121, 715, 833
AlwI GGATC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 620
ApeKI GCWGC 2 cut(s) 589, 1313
ApoI RAATTY 3 cut(s) 197, 844, 884
Asp700I GAANNNNTTC 2 cut(s) 63, 359
AspLEI GCGC 3 cut(s) 285, 734, 1214
AspS9I GGNCC 2 cut(s) 170, 562
AsuHPI GGTGA 3 cut(s) 69, 173, 1327
AsuII TTCGAA 1 cut(s) 810
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 2 cut(s) 170, 562
BanII GRGCYC 1 cut(s) 1209
BauI CACGAG 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 693
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 576, 1325
BccI CCATC 3 cut(s) 5, 377, 899
BclI TGATCA 1 cut(s) 1273
BcoDI GTCTC 3 cut(s) 121, 715, 833
BfaI CTAG 4 cut(s) 521, 593, 650, 825
BfrI CTTAAG 1 cut(s) 431
BisI GCNGC 2 cut(s) 590, 1314
BlsI GCNGC 2 cut(s) 591, 1315
Bme18I GGWCC 2 cut(s) 170, 562
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 170, 562
BmiI GGNNCC 4 cut(s) 172, 512, 898, 995
BmsI GCATC 3 cut(s) 493, 1078, 1132
BplI GAGNNNNNCTC 2 cut(s) 298, 330
Bpu10I CCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 810
BsaJI CCNNGG 3 cut(s) 608, 1289, 1379
Bse1I ACTGG 3 cut(s) 230, 744, 1080
Bse3DI GCAATG 5 cut(s) 553, 727, 1019, 1071, 1178
BseDI CCNNGG 3 cut(s) 608, 1289, 1379
BseGI GGATG 1 cut(s) 1093
BseMI GCAATG 5 cut(s) 553, 727, 1019, 1071, 1178
BseMII CTCAG 4 cut(s) 113, 680, 706, 882
BseNI ACTGG 3 cut(s) 230, 744, 1080
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 576, 1325
BsiHKAI GWGCWC 1 cut(s) 693
BsiHKCI CYCGRG 1 cut(s) 620
BsmAI GTCTC 3 cut(s) 121, 715, 833
BsmI GAATGC 1 cut(s) 495
BsoBI CYCGRG 1 cut(s) 620
Bsp119I TTCGAA 1 cut(s) 810
Bsp1286I GDGCHC 2 cut(s) 693, 1209
Bsp143I GATC 2 cut(s) 331, 1273
Bsp19I CCATGG 1 cut(s) 1289
BspACI CCGC 2 cut(s) 1203, 1350
BspCNI CTCAG 4 cut(s) 114, 679, 705, 881
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 4 cut(s) 172, 512, 898, 995
BspPI GGATC 1 cut(s) 326
BspQI GCTCTTC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 810
BspTI CTTAAG 1 cut(s) 431
BsrDI GCAATG 5 cut(s) 553, 727, 1019, 1071, 1178
BsrI ACTGG 3 cut(s) 230, 744, 1080
BssECI CCNNGG 3 cut(s) 608, 1289, 1379
BssMI GATC 2 cut(s) 331, 1273
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 608, 1289
Bst2BI CACGAG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 709, 1172
Bst6I CTCTTC 3 cut(s) 41, 807, 992
BstAFI CTTAAG 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 810
BstC8I GCNNGC 5 cut(s) 736, 877, 1031, 1205, 1257
BstDEI CTNAG 5 cut(s) 122, 666, 692, 868, 1118
BstDSI CCRYGG 1 cut(s) 1289
BstF5I GGATG 1 cut(s) 1093
BstHHI GCGC 3 cut(s) 285, 734, 1214
BstKTI GATC 2 cut(s) 334, 1276
BstMAI GTCTC 3 cut(s) 121, 715, 833
BstMBI GATC 2 cut(s) 331, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 1142, 1209
BstNSI RCATGY 1 cut(s) 553
BstV1I GCAGC 2 cut(s) 576, 1325
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BtgI CCRYGG 1 cut(s) 1289
BtsCI GGATG 1 cut(s) 1093
BtsI GCAGTG 2 cut(s) 76, 1024
BtsIMutI CAGTG 4 cut(s) 76, 223, 1024, 1177
Cac8I GCNNGC 5 cut(s) 736, 877, 1031, 1205, 1257
CaiI CAGNNNCTG 1 cut(s) 875
CciI TCATGA 1 cut(s) 577
CfoI GCGC 3 cut(s) 285, 734, 1214
Cfr13I GGNCC 2 cut(s) 170, 562
CviAII CATG 5 cut(s) 208, 550, 559, 578, 1290
CviJI RGCY 9 cut(s) 64, 314, 436, 636, 875, 973, 1165, 1207, 1316
CviKI_1 RGCY 9 cut(s) 64, 314, 436, 636, 875, 973, 1165, 1207, 1316
DdeI CTNAG 5 cut(s) 122, 666, 692, 868, 1118
DpnI GATC 2 cut(s) 333, 1275
DpnII GATC 2 cut(s) 331, 1273
DraI TTTAAA 2 cut(s) 234, 889
Eam1104I CTCTTC 3 cut(s) 41, 807, 992
EarI CTCTTC 3 cut(s) 41, 807, 992
Eco130I CCWWGG 2 cut(s) 608, 1289
Eco24I GRGCYC 1 cut(s) 1209
Eco47I GGWCC 2 cut(s) 170, 562
Eco57I CTGAAG 4 cut(s) 489, 685, 973, 1158
Eco88I CYCGRG 1 cut(s) 620
EcoT14I CCWWGG 2 cut(s) 608, 1289
EcoT22I ATGCAT 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 1209
ErhI CCWWGG 2 cut(s) 608, 1289
FaeI CATG 5 cut(s) 211, 553, 562, 581, 1293
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FatI CATG 5 cut(s) 207, 549, 558, 577, 1289
FauI CCCGC 1 cut(s) 1196
FauNDI CATATG 1 cut(s) 1048
FbaI TGATCA 1 cut(s) 1273
Fnu4HI GCNGC 2 cut(s) 590, 1314
FokI GGATG 1 cut(s) 1100
FriOI GRGCYC 1 cut(s) 1209
Fsp4HI GCNGC 2 cut(s) 590, 1314
FspBI CTAG 4 cut(s) 521, 593, 650, 825
GlaI GCGC 3 cut(s) 284, 733, 1213
GluI GCNGC 2 cut(s) 590, 1314
HhaI GCGC 3 cut(s) 285, 734, 1214
Hin1II CATG 5 cut(s) 211, 553, 562, 581, 1293
Hin6I GCGC 3 cut(s) 283, 732, 1212
HinP1I GCGC 3 cut(s) 283, 732, 1212
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HindIII AAGCTT 3 cut(s) 62, 434, 1163
HinfI GANTC 2 cut(s) 74, 536
HphI GGTGA 3 cut(s) 69, 173, 1327
Hpy166II GTNNAC 2 cut(s) 656, 802
Hpy188I TCNGA 3 cut(s) 170, 669, 871
Hpy188III TCNNGA 6 cut(s) 113, 249, 442, 578, 991, 1187
Hpy8I GTNNAC 2 cut(s) 656, 802
HpyAV CCTTC 1 cut(s) 1334
HpyCH4III ACNGT 2 cut(s) 709, 1172
HpyCH4IV ACGT 1 cut(s) 1340
HpyCH4V TGCA 7 cut(s) 329, 493, 553, 558, 968, 1313, 1345
HpyF10VI GCNNNNNNNGC 2 cut(s) 1142, 1209
HpyF3I CTNAG 5 cut(s) 122, 666, 692, 868, 1118
HpySE526I ACGT 1 cut(s) 1340
Hsp92II CATG 5 cut(s) 211, 553, 562, 581, 1293
HspAI GCGC 3 cut(s) 283, 732, 1212
Ksp22I TGATCA 1 cut(s) 1273
Kzo9I GATC 2 cut(s) 331, 1273
LguI GCTCTTC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 576, 1325
LweI GCATC 3 cut(s) 493, 1078, 1132
MaeI CTAG 4 cut(s) 521, 593, 650, 825
MaeII ACGT 1 cut(s) 1340
MaeIII GTNAC 2 cut(s) 1039, 1172
MalI GATC 2 cut(s) 333, 1275
MboI GATC 2 cut(s) 331, 1273
MfeI CAATTG 3 cut(s) 795, 963, 1123
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 693, 1209
MlyI GAGTC 1 cut(s) 530
Mph1103I ATGCAT 1 cut(s) 555
MroXI GAANNNNTTC 2 cut(s) 63, 359
MseI TTAA 6 cut(s) 233, 423, 432, 888, 1058, 1265
MslI CAYNNNNRTG 2 cut(s) 186, 368
MspCI CTTAAG 1 cut(s) 431
MunI CAATTG 3 cut(s) 795, 963, 1123
Mva1269I GAATGC 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 1142, 1209
NcoI CCATGG 1 cut(s) 1289
NdeI CATATG 1 cut(s) 1048
NdeII GATC 2 cut(s) 331, 1273
NlaIII CATG 5 cut(s) 211, 553, 562, 581, 1293
NlaIV GGNNCC 4 cut(s) 172, 512, 898, 995
NmuCI GTSAC 1 cut(s) 1172
NsiI ATGCAT 1 cut(s) 555
NspI RCATGY 1 cut(s) 553
NspV TTCGAA 1 cut(s) 810
OliI CACNNNNGTG 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 620
PagI TCATGA 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 41
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 2 cut(s) 63, 359
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 591, 1315
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 172, 512, 898, 995
PspPI GGNCC 2 cut(s) 170, 562
PspXI VCTCGAGB 1 cut(s) 620
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 1 cut(s) 331
RseI CAYNNNNRTG 2 cut(s) 186, 368
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 6 cut(s) 233, 423, 432, 888, 1058, 1265
SatI GCNGC 2 cut(s) 590, 1314
Sau3AI GATC 2 cut(s) 331, 1273
Sau96I GGNCC 2 cut(s) 170, 562
SchI GAGTC 1 cut(s) 530
SduI GDGCHC 2 cut(s) 693, 1209
SfaNI GCATC 3 cut(s) 493, 1078, 1132
Sfr274I CTCGAG 1 cut(s) 620
SfuI TTCGAA 1 cut(s) 810
SinI GGWCC 2 cut(s) 170, 562
SlaI CTCGAG 1 cut(s) 620
SmiMI CAYNNNNRTG 2 cut(s) 186, 368
SmlI CTYRAG 2 cut(s) 431, 620
SmoI CTYRAG 2 cut(s) 431, 620
SsiI CCGC 2 cut(s) 1203, 1350
SspMI CTAG 4 cut(s) 521, 593, 650, 825
StyI CCWWGG 2 cut(s) 608, 1289
TaaI ACNGT 2 cut(s) 709, 1172
TaiI ACGT 1 cut(s) 1343
TaqI TCGA 3 cut(s) 621, 810, 1158
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 6 cut(s) 233, 423, 432, 888, 1058, 1265
Tru9I TTAA 6 cut(s) 233, 423, 432, 888, 1058, 1265
TscAI CASTG 4 cut(s) 76, 230, 1031, 1177
TseFI GTSAC 1 cut(s) 1172
TseI GCWGC 2 cut(s) 589, 1313
Tsp45I GTSAC 1 cut(s) 1172
TspDTI ATGAA 7 cut(s) 72, 167, 352, 357, 671, 932, 1239
TspGWI ACGGA 2 cut(s) 851, 1091
TspRI CASTG 4 cut(s) 76, 230, 1031, 1177
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 170, 562
XapI RAATTY 3 cut(s) 197, 844, 884
XceI RCATGY 1 cut(s) 553
XhoI CTCGAG 1 cut(s) 620
XmnI GAANNNNTTC 2 cut(s) 63, 359
XspI CTAG 4 cut(s) 521, 593, 650, 825
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.