pycom04g02210

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000435
Physical Location & Seq
Reverse (-)
1981517 .. 1981861
345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g02210.2

Sequence Viewer

Length: 303 bp
ATGATTCATTGGTTGCAGTATCTAGCCAGGTTCCAACCCGAAAACATAAAGCACAATGAAGCACTGTTCGAGCGCCTAGCGCTGGCATGGGTTCATCACCAAGGAAATGATGTGTGTCCCATACCTGGAACCACCAAGATCGCGAATTTTGACGAGAACATCGCAGCTCTGACTGTTAAACTGACACCGGAAGAATTGGCCGAGATTGAATCTTATGGTTTAGAAGATGCCGTTAAAGGTGATAGAATGCCCTCCCATGGTACTTGGAGGAACTCCGAAACTCCGCCATTGCCTTCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

101

Amino Acids

11.33

Weight (kDa)

5.21

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 1 cut(s) 262
AfeI AGCGCT 1 cut(s) 81
AfiI CCNNNNNNNGG 3 cut(s) 82, 125, 257
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 2 cut(s) 26, 124
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 2 cut(s) 75, 82
AsuHPI GGTGA 2 cut(s) 89, 251
BbvI GCAGC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 2 cut(s) 28, 126
BfaI CTAG 2 cut(s) 23, 77
BfoI RGCGCY 2 cut(s) 76, 83
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 28, 126
BmiI GGNNCC 2 cut(s) 32, 130
BmrFI CCNGG 2 cut(s) 28, 126
BmsI GCATC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 100, 256
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 125, 257
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 28, 126
BseDI CCNNGG 2 cut(s) 100, 256
BseLI CCNNNNNNNGG 3 cut(s) 82, 125, 257
BseMI GCAATG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 82, 125, 257
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 256
Bsp68I TCGCGA 1 cut(s) 143
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 200
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 32, 130
BsrDI GCAATG 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 100, 256
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 100, 256
Bst2UI CCWGG 2 cut(s) 28, 126
Bst4CI ACNGT 2 cut(s) 66, 175
BstC8I GCNNGC 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 2 cut(s) 76, 83
BstHHI GCGC 2 cut(s) 75, 82
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 2 cut(s) 28, 126
BstSCI CCNGG 2 cut(s) 26, 124
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 62
BtuMI TCGCGA 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 2 cut(s) 75, 82
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 87, 257
CviJI RGCY 3 cut(s) 26, 167, 200
CviKI_1 RGCY 3 cut(s) 26, 167, 200
CviQI GTAC 1 cut(s) 261
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 198
EciI GGCGGA 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 100, 256
Eco47III AGCGCT 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 26, 124
EcoT14I CCWWGG 2 cut(s) 100, 256
ErhI CCWWGG 2 cut(s) 100, 256
FaeI CATG 2 cut(s) 90, 260
FaiI YATR 5 cut(s) 47, 88, 122, 216, 258
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 86, 256
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 23, 77
GlaI GCGC 2 cut(s) 74, 81
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 2 cut(s) 76, 83
HaeIII GGCC 1 cut(s) 200
HapII CCGG 1 cut(s) 188
HhaI GCGC 2 cut(s) 75, 82
Hin1II CATG 2 cut(s) 90, 260
Hin6I GCGC 2 cut(s) 73, 80
HinP1I GCGC 2 cut(s) 73, 80
HinfI GANTC 2 cut(s) 4, 209
HpaII CCGG 1 cut(s) 188
HphI GGTGA 2 cut(s) 89, 251
Hpy188I TCNGA 2 cut(s) 171, 277
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 2 cut(s) 66, 175
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
Hsp92II CATG 2 cut(s) 90, 260
HspAI GCGC 2 cut(s) 73, 80
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 6 cut(s) 13, 40, 68, 111, 138, 201
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 23, 77
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 2 cut(s) 203, 236
MluCI AATT 2 cut(s) 145, 194
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 2 cut(s) 261, 262
MseI TTAA 3 cut(s) 177, 234, 301
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 28, 126
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 2 cut(s) 28, 126
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 79
NcoI CCATGG 1 cut(s) 256
NdeII GATC 1 cut(s) 138
NlaIII CATG 2 cut(s) 90, 260
NlaIV GGNNCC 2 cut(s) 32, 130
NmeAIII GCCGAG 1 cut(s) 226
NruI TCGCGA 1 cut(s) 143
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 4, 209
PkrI GCNGC 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 26, 124
PspGI CCWGG 2 cut(s) 26, 124
PspN4I GGNNCC 2 cut(s) 32, 130
RruI TCGCGA 1 cut(s) 143
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 177, 234, 301
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 28, 126
SetI ASST 4 cut(s) 32, 127, 169, 241
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 2 cut(s) 145, 194
SsiI CCGC 1 cut(s) 284
SspMI CTAG 2 cut(s) 23, 77
StyD4I CCNGG 2 cut(s) 26, 124
StyI CCWWGG 2 cut(s) 100, 256
TaaI ACNGT 2 cut(s) 66, 175
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 145, 194
TfiI GAWTC 2 cut(s) 4, 209
Tru1I TTAA 3 cut(s) 177, 234, 301
Tru9I TTAA 3 cut(s) 177, 234, 301
TscAI CASTG 1 cut(s) 69
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 72, 83
TspRI CASTG 1 cut(s) 69
XapI RAATTY 1 cut(s) 145
XspI CTAG 2 cut(s) 23, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.