Rroxscaffold_5G00355560

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000435
Physical Location & Seq
Reverse (-)
34298106 .. 34307942
9837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355560.1

Sequence Viewer

Length: 1068 bp
ATGTATTCAAACCTAACTGCCCTCATAAGTAGATGGCATGGCGAGCATCAGGAGGATGAAGCTGGGGTCGCAAGGCCTGGAGGTCTCGGCTCAAGGGCTGGGTTGCGTGGGCATGTCCGTCATCTCTGGCCCCCGAAGCCTGAAGCAGACATGATCAAGCTCATCCACCACGCCATCGACGCCGGCGTCGCCTTCCTTGATACCGCTGACGTTTACGGTCTCTTCACCAACGAACTTCTTCTTGGCAAGGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAATTGGCCACCAAATTTGGTATCAGCTTTGAGGACAACAAGAGAGAGATTATTCGAGGCGACCCGGCATATGTCAGGTCTGCTTGTGAAGGAAGCTTGAAACGACTTGGTGTAGATTCTATTGATCTCTATTATCAGCATAGGATTGACACCCGTGTCCCCATCGAAGTCACGGTGGGGGAGCTCAAGAAACTAGTTGAAGAGGGTAAGATAAAGTACATTGGTCTGTCTGAGGCATCAGCTTCAACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATGTGGAGGAAGAAATAGTTCCTACTTGTCGGGAACTTGGCATTGGTATTGTTGCATACAGTCCTCTAGCAAGAGGATTTTTTTCACTGGGGGCCAAGTTCATTGAAAGTCTTCCGAACAATGATTCCCGAAAGAAGTTGCCCAGGTTCCAAGCTGAAAACCTAGAGCATAATGAAACAATATTCCAGCGGGTTAGTGAACTTGCAGCAAGGAAGGGATGTACCCCATCTCAACTTGCCCTGGCTTGGATTCATCACCAAGGAAATGATGTGTGCCCTATACCCGGAACTACCAAGATTGAGAATTTTGACCAGAACATTAAAGCTCTATCAGTAGAACTGACACCAGAAGAAATGGCTGAGCTTGAATCTTTTGCTTCGGCAGATGCTGTTAAGGGCGACAGATATCAGACTGGTATCAGTACTTGGATGAACTCTGAAACTCCACCACTGTCTTCATGGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

355

Amino Acids

39.32

Weight (kDa)

5.98

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 43 - 323 1.8e-68 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 185, 434
AciI CCGC 2 cut(s) 204, 784
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 2 cut(s) 293, 898
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 180, 186
AfaI GTAC 3 cut(s) 497, 817, 1018
AfiI CCNNNNNNNGG 2 cut(s) 840, 878
AgsI TTSAA 7 cut(s) 9, 281, 379, 479, 525, 701, 962
AhlI ACTAGT 1 cut(s) 472
AjnI CCWGG 3 cut(s) 76, 737, 834
AjuI GAANNNNNNNTTGG 4 cut(s) 225, 257, 621, 653
AloI GAACNNNNNNTCC 2 cut(s) 704, 736
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 3 cut(s) 89, 224, 264
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 4 cut(s) 74, 128, 285, 687
ApeKI GCWGC 2 cut(s) 568, 800
ApoI RAATTY 2 cut(s) 293, 898
Asp700I GAANNNNTTC 3 cut(s) 237, 612, 705
AspS9I GGNCC 3 cut(s) 129, 579, 687
AsuC2I CCSGG 2 cut(s) 344, 879
AsuHPI GGTGA 3 cut(s) 217, 277, 842
AvaII GGWCC 1 cut(s) 579
BaeGI GKGCMC 1 cut(s) 872
BalI TGGCCA 1 cut(s) 287
BanII GRGCYC 2 cut(s) 465, 541
BbsI GAAGAC 2 cut(s) 698, 1041
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 580, 812
BccI CCATC 4 cut(s) 27, 182, 449, 829
BciT130I CCWGG 3 cut(s) 78, 739, 836
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 2 cut(s) 344, 879
BcoDI GTCTC 3 cut(s) 89, 224, 264
BcuI ACTAGT 1 cut(s) 472
BfaI CTAG 3 cut(s) 473, 662, 758
BisI GCNGC 2 cut(s) 569, 801
BlpI GCTNAGC 1 cut(s) 954
BlsI GCNGC 2 cut(s) 570, 802
BmcAI AGTACT 1 cut(s) 1018
Bme1390I CCNGG 5 cut(s) 78, 344, 739, 836, 879
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 3 cut(s) 129, 579, 687
BmiI GGNNCC 3 cut(s) 131, 688, 743
BmrFI CCNGG 5 cut(s) 78, 344, 739, 836, 879
BmrI ACTGGG 1 cut(s) 692
BmsI GCATC 3 cut(s) 55, 524, 970
BmuI ACTGGG 1 cut(s) 692
BpiI GAAGAC 2 cut(s) 698, 1041
BpmI CTGGAG 2 cut(s) 99, 593
Bpu1102I GCTNAGC 1 cut(s) 954
BpuEI CTTGAG 2 cut(s) 76, 449
BpuMI CCSGG 2 cut(s) 344, 879
BsaHI GRCGYC 2 cut(s) 180, 186
BsaI GGTCTC 2 cut(s) 89, 224
BsaJI CCNNGG 3 cut(s) 737, 834, 853
Bsc4I CCNNNNNNNGG 2 cut(s) 840, 878
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 687, 1012
BseBI CCWGG 3 cut(s) 78, 739, 836
BseDI CCNNGG 3 cut(s) 737, 834, 853
BseGI GGATG 5 cut(s) 61, 162, 550, 818, 1029
BseLI CCNNNNNNNGG 2 cut(s) 840, 878
BseMII CTCAG 2 cut(s) 501, 945
BseNI ACTGG 2 cut(s) 687, 1012
BseSI GKGCMC 1 cut(s) 872
BseXI GCAGC 2 cut(s) 580, 812
BseYI CCCAGC 2 cut(s) 62, 98
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 4 cut(s) 76, 130, 287, 689
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 3 cut(s) 183, 344, 879
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 840, 878
BsmAI GTCTC 3 cut(s) 89, 224, 264
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 4 cut(s) 76, 130, 287, 689
Bso31I GGTCTC 2 cut(s) 89, 224
Bsp1286I GDGCHC 3 cut(s) 465, 541, 872
Bsp143I GATC 2 cut(s) 153, 403
Bsp1720I GCTNAGC 1 cut(s) 954
BspACI CCGC 2 cut(s) 204, 784
BspANI GGCC 4 cut(s) 76, 130, 287, 689
BspCNI CTCAG 2 cut(s) 502, 946
BspLI GGNNCC 3 cut(s) 131, 688, 743
BspQI GCTCTTC 1 cut(s) 529
BspTNI GGTCTC 2 cut(s) 89, 224
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 2 cut(s) 687, 1012
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 737, 834, 853
BssMI GATC 2 cut(s) 153, 403
BssNI GRCGYC 2 cut(s) 180, 186
BssT1I CCWWGG 1 cut(s) 853
Bst2UI CCWGG 3 cut(s) 78, 739, 836
Bst4CI ACNGT 4 cut(s) 218, 454, 656, 1047
Bst6I CTCTTC 3 cut(s) 227, 474, 529
BstACI GRCGYC 2 cut(s) 180, 186
BstC8I GCNNGC 2 cut(s) 44, 184
BstDEI CTNAG 2 cut(s) 510, 954
BstF5I GGATG 5 cut(s) 61, 162, 550, 818, 1029
BstKTI GATC 2 cut(s) 156, 406
BstMAI GTCTC 3 cut(s) 89, 224, 264
BstMBI GATC 2 cut(s) 153, 403
BstMWI GCNNNNNNNGC 5 cut(s) 43, 68, 136, 179, 188
BstNI CCWGG 3 cut(s) 78, 739, 836
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 5 cut(s) 76, 342, 737, 834, 877
BstSLI GKGCMC 1 cut(s) 872
BstV1I GCAGC 2 cut(s) 580, 812
BstV2I GAAGAC 2 cut(s) 698, 1041
BsuRI GGCC 4 cut(s) 76, 130, 287, 689
BtsCI GGATG 5 cut(s) 61, 162, 550, 818, 1029
BtsIMutI CAGTG 2 cut(s) 680, 1043
Cac8I GCNNGC 2 cut(s) 44, 184
CaiI CAGNNNCTG 1 cut(s) 983
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 129, 579, 687
CseI GACGC 2 cut(s) 175, 188
Csp6I GTAC 3 cut(s) 496, 816, 1017
CspCI CAANNNNNGTGG 4 cut(s) 277, 312, 579, 614
CviAII CATG 5 cut(s) 38, 113, 151, 542, 1053
CviQI GTAC 3 cut(s) 496, 816, 1017
DdeI CTNAG 2 cut(s) 510, 954
DpnI GATC 2 cut(s) 155, 405
DpnII GATC 2 cut(s) 153, 403
DrdI GACNNNNNNGTC 2 cut(s) 185, 434
DseDI GACNNNNNNGTC 2 cut(s) 185, 434
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 227, 474, 529
EarI CTCTTC 3 cut(s) 227, 474, 529
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 853
Eco147I AGGCCT 1 cut(s) 76
Eco24I GRGCYC 2 cut(s) 465, 541
Eco31I GGTCTC 2 cut(s) 89, 224
Eco32I GATATC 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 76, 737, 834
EcoRV GATATC 1 cut(s) 1001
EcoT14I CCWWGG 1 cut(s) 853
EcoT38I GRGCYC 2 cut(s) 465, 541
ErhI CCWWGG 1 cut(s) 853
FaeI CATG 5 cut(s) 41, 116, 154, 545, 1056
FaqI GGGAC 1 cut(s) 422
FatI CATG 5 cut(s) 37, 112, 150, 541, 1052
FauI CCCGC 1 cut(s) 777
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 569, 801
FokI GGATG 5 cut(s) 68, 149, 537, 825, 1036
FriOI GRGCYC 2 cut(s) 465, 541
Fsp4HI GCNGC 2 cut(s) 569, 801
FspBI CTAG 3 cut(s) 473, 662, 758
GluI GCNGC 2 cut(s) 569, 801
GsaI CCCAGC 2 cut(s) 66, 102
GsuI CTGGAG 2 cut(s) 99, 593
HaeIII GGCC 4 cut(s) 76, 130, 287, 689
HapII CCGG 3 cut(s) 183, 344, 879
HgaI GACGC 2 cut(s) 175, 188
Hin1I GRCGYC 2 cut(s) 180, 186
Hin1II CATG 5 cut(s) 41, 116, 154, 545, 1056
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 4 cut(s) 395, 719, 844, 962
HpaII CCGG 3 cut(s) 183, 344, 879
HphI GGTGA 3 cut(s) 217, 277, 842
Hpy166II GTNNAC 2 cut(s) 214, 794
Hpy188I TCNGA 4 cut(s) 511, 711, 1005, 1033
Hpy188III TCNNGA 5 cut(s) 50, 466, 591, 626, 723
Hpy8I GTNNAC 2 cut(s) 214, 794
Hpy99I CGWCG 2 cut(s) 182, 191
HpyAV CCTTC 3 cut(s) 202, 362, 802
HpyCH4III ACNGT 4 cut(s) 218, 454, 656, 1047
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 568, 650, 800
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 68, 136, 179, 188
HpyF3I CTNAG 2 cut(s) 510, 954
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 2 cut(s) 180, 186
Hsp92II CATG 5 cut(s) 41, 116, 154, 545, 1056
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 2 cut(s) 153, 403
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 2 cut(s) 580, 812
LweI GCATC 3 cut(s) 55, 524, 970
MaeI CTAG 3 cut(s) 473, 662, 758
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 155, 405
MboI GATC 2 cut(s) 153, 403
MboII GAAGA 8 cut(s) 214, 230, 491, 546, 617, 698, 956, 1041
MhlI GDGCHC 3 cut(s) 465, 541, 872
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 3 cut(s) 281, 293, 898
MluNI TGGCCA 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 287
MreI CGCCGGCG 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 182
MroXI GAANNNNTTC 3 cut(s) 237, 612, 705
MscI TGGCCA 1 cut(s) 287
MseI TTAA 2 cut(s) 915, 987
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 3 cut(s) 206, 571, 784
MspI CCGG 3 cut(s) 183, 344, 879
MspR9I CCNGG 5 cut(s) 78, 344, 739, 836, 879
MvaI CCWGG 3 cut(s) 78, 739, 836
MwoI GCNNNNNNNGC 5 cut(s) 43, 68, 136, 179, 188
NaeI GCCGGC 1 cut(s) 184
NciI CCSGG 2 cut(s) 344, 879
NdeI CATATG 1 cut(s) 349
NdeII GATC 2 cut(s) 153, 403
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 5 cut(s) 41, 116, 154, 545, 1056
NlaIV GGNNCC 3 cut(s) 131, 688, 743
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 116
PceI AGGCCT 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PdiI GCCGGC 1 cut(s) 184
PdmI GAANNNNTTC 3 cut(s) 237, 612, 705
PfeI GAWTC 4 cut(s) 395, 719, 844, 962
PkrI GCNGC 2 cut(s) 570, 802
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 3 cut(s) 76, 737, 834
PspFI CCCAGC 2 cut(s) 62, 98
PspGI CCWGG 3 cut(s) 76, 737, 834
PspN4I GGNNCC 3 cut(s) 131, 688, 743
PspPI GGNCC 3 cut(s) 129, 579, 687
PstNI CAGNNNCTG 1 cut(s) 983
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 3 cut(s) 497, 817, 1018
RsaNI GTAC 3 cut(s) 496, 816, 1017
SacI GAGCTC 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 915, 987
SatI GCNGC 2 cut(s) 569, 801
Sau3AI GATC 2 cut(s) 153, 403
Sau96I GGNCC 3 cut(s) 129, 579, 687
ScaI AGTACT 1 cut(s) 1018
ScrFI CCNGG 5 cut(s) 78, 344, 739, 836, 879
SduI GDGCHC 3 cut(s) 465, 541, 872
SfaNI GCATC 3 cut(s) 55, 524, 970
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 1 cut(s) 579
SmlI CTYRAG 2 cut(s) 91, 464
SmoI CTYRAG 2 cut(s) 91, 464
SpeI ACTAGT 1 cut(s) 472
Sse9I AATT 3 cut(s) 281, 293, 898
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 2 cut(s) 204, 784
SspI AATATT 1 cut(s) 777
SspMI CTAG 3 cut(s) 473, 662, 758
SstI GAGCTC 1 cut(s) 465
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 5 cut(s) 76, 342, 737, 834, 877
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 4 cut(s) 218, 454, 656, 1047
TaiI ACGT 1 cut(s) 213
TaqI TCGA 3 cut(s) 177, 334, 444
TasI AATT 3 cut(s) 281, 293, 898
TatI WGTACW 2 cut(s) 495, 1016
TfiI GAWTC 4 cut(s) 395, 719, 844, 962
Tru1I TTAA 2 cut(s) 915, 987
Tru9I TTAA 2 cut(s) 915, 987
TscAI CASTG 2 cut(s) 687, 1050
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 568, 800
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 7 cut(s) 72, 539, 685, 783, 836, 1040, 1041
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 2 cut(s) 687, 1050
VpaK11BI GGWCC 1 cut(s) 579
XapI RAATTY 2 cut(s) 293, 898
XceI RCATGY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 1050
XmnI GAANNNNTTC 3 cut(s) 237, 612, 705
XspI CTAG 3 cut(s) 473, 662, 758
ZrmI AGTACT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.