Prupe.1G175500_v2.0.a1

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000435
Physical Location & Seq
Reverse (-)
14789081 .. 14798665
9585 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G175500.1

Sequence Viewer

Length: 1032 bp
ATGGCAGGAGGAGTGAGGAGAATCAAGTTGGGTTCACAAGGCCTTGAGGTCTCTGCTCAAGGCCTGGGATGTATGGGCATGTCTGGCTTCTATGACGCTCCAAAGCCCGACGCAGACATGATCAGTCTCATCCACCATGCCATTTACTCCGGCGTCACCTTCCTCGACACCTCTGACTTCTACGGCCCCTTCACCAACGAAATTATGCTTGGCAAGGCTCTGAAGGGAGGGGTAAGAGAGAAGGTTGAATTGGCCACCAAGTTTGGCATCTACTTAGCAGACAAGAAGAGGGCGGTGCGAGGTGACCCTGCCTATGTGAGGGCTGCTGCTGAGGATAGCTTGAAGCGCCTTGGTGTTGATTCTGTAGATCTCTATTATCAGCATCGGATTGACACCACTGTACCCATAGAAGTCACGGCAGGGGAATTGAAGAAACTAGTTGAAGAGGGTAAGGTGAAGTACATTGGCCTATCTGAGGCCTCCGCTTCTACAATAAGAAGAGCACATGCTGTTCATCCAATAACAGCTGTGCAGTTGGAGTGGTCCTTGTGGTCAAGAGATGTCGAGGCAGAAATAGTTCCTACTTGCCGGGAACTTGGCATTGGTATTGTTGCCTACAGTCCTCTAGGGAGAGGATTCTTTTCATCAGGCGCTAAGTTCGTCGAAAACCTCTCCCATGATGATTCTCGAAAGGATCACCCCAGGTTCCAACCCGAAAACGTAGAGCATAATAAAGCACTATTCGAGCGGGTTAGTGATCTTGCTGCAAGGAAAGGGTGCACCCCATCTCAGCTAGCACTGGCCTGGGTTCATCATCAAGGAAACGATGTGTGTCCGATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTGGTGCTCTCTCTGTGAAACTGACACCAGAAGAACTGGCTGAGCTTGAATCTTTTGCTTCTGCTGATGCCGTTAAAGGTGGCAGGTATCAGAATGACTTTAGCACTTGGAAGAACTCCGAAACTCCTCCAGTGTCTTCATGGAAAGCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

344

Amino Acids

37.5

Weight (kDa)

6.38

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 951
AccBSI CCGCTC 1 cut(s) 748
AciI CCGC 3 cut(s) 293, 483, 748
AclWI GGATC 1 cut(s) 702
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 402, 461
AfiI CCNNNNNNNGG 3 cut(s) 318, 475, 842
AgsI TTSAA 5 cut(s) 248, 343, 430, 443, 926
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 3 cut(s) 63, 701, 803
AjuI GAANNNNNNNTTGG 6 cut(s) 192, 224, 233, 265, 585, 617
AluBI AGCT 4 cut(s) 339, 527, 793, 922
AluI AGCT 4 cut(s) 339, 527, 793, 922
Alw21I GWGCWC 3 cut(s) 505, 782, 886
Alw26I GTCTC 2 cut(s) 55, 131
Alw44I GTGCAC 1 cut(s) 778
AlwI GGATC 1 cut(s) 702
AoxI GGCC 7 cut(s) 40, 61, 184, 252, 466, 477, 801
ApaLI GTGCAC 1 cut(s) 778
ApeKI GCWGC 3 cut(s) 323, 326, 764
ApoI RAATTY 1 cut(s) 862
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 2 cut(s) 348, 653
AspS9I GGNCC 2 cut(s) 185, 543
AsuC2I CCSGG 2 cut(s) 590, 843
AsuHPI GGTGA 5 cut(s) 148, 184, 314, 466, 689
AsuNHI GCTAGC 1 cut(s) 793
AvaII GGWCC 1 cut(s) 543
BaeGI GKGCMC 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 3 cut(s) 505, 782, 886
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 310, 313, 751
BccI CCATC 1 cut(s) 793
BceAI ACGGC 3 cut(s) 199, 432, 932
BciT130I CCWGG 3 cut(s) 65, 703, 805
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 2 cut(s) 590, 843
BcoDI GTCTC 2 cut(s) 55, 131
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 3 cut(s) 437, 626, 794
BfmI CTRYAG 2 cut(s) 363, 616
BfoI RGCGCY 2 cut(s) 349, 654
BfuAI ACCTGC 1 cut(s) 951
BglII AGATCT 1 cut(s) 367
BisI GCNGC 3 cut(s) 324, 327, 765
BlpI GCTNAGC 1 cut(s) 918
BlsI GCNGC 3 cut(s) 325, 328, 766
Bme1390I CCNGG 5 cut(s) 65, 590, 703, 805, 843
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 185, 543
BmiI GGNNCC 3 cut(s) 187, 707, 847
BmrFI CCNGG 5 cut(s) 65, 590, 703, 805, 843
BmsI GCATC 3 cut(s) 276, 391, 934
BmtI GCTAGC 1 cut(s) 797
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 1 cut(s) 990
Bpu10I CCTNAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 918
BpuEI CTTGAG 2 cut(s) 42, 65
BpuMI CCSGG 2 cut(s) 590, 843
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 4 cut(s) 64, 349, 701, 804
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 475, 842
Bse1I ACTGG 3 cut(s) 804, 918, 1007
BseBI CCWGG 3 cut(s) 65, 703, 805
BseDI CCNNGG 4 cut(s) 64, 349, 701, 804
BseGI GGATG 3 cut(s) 74, 129, 514
BseLI CCNNNNNNNGG 3 cut(s) 318, 475, 842
BseMII CTCAG 4 cut(s) 321, 465, 803, 909
BseNI ACTGG 3 cut(s) 804, 918, 1007
BseRI GAGGAG 3 cut(s) 24, 31, 993
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 3 cut(s) 310, 313, 751
BsgI GTGCAG 1 cut(s) 551
BshFI GGCC 7 cut(s) 42, 63, 186, 254, 468, 479, 803
BsiHKAI GWGCWC 3 cut(s) 505, 782, 886
BsiSI CCGG 3 cut(s) 150, 589, 843
BslI CCNNNNNNNGG 3 cut(s) 318, 475, 842
BsmAI GTCTC 2 cut(s) 55, 131
BsnI GGCC 7 cut(s) 42, 63, 186, 254, 468, 479, 803
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 3 cut(s) 505, 782, 886
Bsp143I GATC 4 cut(s) 120, 367, 694, 757
Bsp1720I GCTNAGC 1 cut(s) 918
BspACI CCGC 3 cut(s) 293, 483, 748
BspANI GGCC 7 cut(s) 42, 63, 186, 254, 468, 479, 803
BspCNI CTCAG 4 cut(s) 322, 466, 802, 910
BspLI GGNNCC 3 cut(s) 187, 707, 847
BspMI ACCTGC 1 cut(s) 951
BspOI GCTAGC 1 cut(s) 797
BspPI GGATC 1 cut(s) 702
BspQI GCTCTTC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 748
BsrI ACTGG 3 cut(s) 804, 918, 1007
BssECI CCNNGG 4 cut(s) 64, 349, 701, 804
BssMI GATC 4 cut(s) 120, 367, 694, 757
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 3 cut(s) 65, 703, 805
Bst4CI ACNGT 2 cut(s) 400, 620
Bst6I CTCTTC 3 cut(s) 281, 438, 493
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 6 cut(s) 274, 330, 474, 654, 789, 918
BstEII GGTNACC 1 cut(s) 302
BstENI CCTNNNNNAGG 2 cut(s) 316, 473
BstF5I GGATG 3 cut(s) 74, 129, 514
BstH2I RGCGCY 2 cut(s) 349, 654
BstHHI GCGC 2 cut(s) 348, 653
BstKTI GATC 4 cut(s) 123, 370, 697, 760
BstMAI GTCTC 2 cut(s) 55, 131
BstMBI GATC 4 cut(s) 120, 367, 694, 757
BstMWI GCNNNNNNNGC 2 cut(s) 84, 345
BstNI CCWGG 3 cut(s) 65, 703, 805
BstNSI RCATGY 2 cut(s) 82, 509
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 5 cut(s) 63, 588, 701, 803, 841
BstSFI CTRYAG 2 cut(s) 363, 616
BstSLI GKGCMC 1 cut(s) 782
BstV1I GCAGC 3 cut(s) 310, 313, 751
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 878
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 7 cut(s) 42, 63, 186, 254, 468, 479, 803
BtsCI GGATG 3 cut(s) 74, 129, 514
BtsIMutI CAGTG 3 cut(s) 396, 797, 1014
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 1 cut(s) 795
CfoI GCGC 2 cut(s) 348, 653
Cfr13I GGNCC 2 cut(s) 185, 543
CseI GACGC 3 cut(s) 104, 119, 142
Csp6I GTAC 2 cut(s) 401, 460
CspCI CAANNNNNGTGG 4 cut(s) 244, 279, 838, 873
CviAII CATG 7 cut(s) 79, 118, 137, 506, 677, 1017, 1029
CviQI GTAC 2 cut(s) 401, 460
DdeI CTNAG 6 cut(s) 274, 330, 474, 654, 789, 918
DpnI GATC 4 cut(s) 122, 369, 696, 759
DpnII GATC 4 cut(s) 120, 367, 694, 757
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 281, 438, 493
EarI CTCTTC 3 cut(s) 281, 438, 493
Eco130I CCWWGG 1 cut(s) 349
Eco147I AGGCCT 3 cut(s) 42, 63, 479
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 302
EcoNI CCTNNNNNAGG 2 cut(s) 316, 473
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 3 cut(s) 63, 701, 803
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 7 cut(s) 82, 121, 140, 509, 680, 1020, 1032
FatI CATG 7 cut(s) 78, 117, 136, 505, 676, 1016, 1028
FauI CCCGC 1 cut(s) 741
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 324, 327, 765
FokI GGATG 3 cut(s) 81, 116, 501
Fsp4HI GCNGC 3 cut(s) 324, 327, 765
FspBI CTAG 3 cut(s) 437, 626, 794
GlaI GCGC 2 cut(s) 347, 652
GluI GCNGC 3 cut(s) 324, 327, 765
GsuI CTGGAG 1 cut(s) 990
HaeII RGCGCY 2 cut(s) 349, 654
HaeIII GGCC 7 cut(s) 42, 63, 186, 254, 468, 479, 803
HapII CCGG 3 cut(s) 150, 589, 843
HgaI GACGC 3 cut(s) 104, 119, 142
HhaI GCGC 2 cut(s) 348, 653
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 7 cut(s) 82, 121, 140, 509, 680, 1020, 1032
Hin6I GCGC 2 cut(s) 346, 651
HinP1I GCGC 2 cut(s) 346, 651
HinfI GANTC 5 cut(s) 21, 359, 636, 683, 926
HpaII CCGG 3 cut(s) 150, 589, 843
HphI GGTGA 5 cut(s) 148, 184, 314, 466, 689
Hpy166II GTNNAC 2 cut(s) 35, 780
Hpy188I TCNGA 7 cut(s) 175, 222, 387, 475, 837, 969, 997
Hpy188III TCNNGA 2 cut(s) 555, 687
Hpy8I GTNNAC 2 cut(s) 35, 780
Hpy99I CGWCG 2 cut(s) 113, 665
HpyAV CCTTC 4 cut(s) 169, 199, 217, 235
HpyCH4III ACNGT 2 cut(s) 400, 620
HpyCH4IV ACGT 1 cut(s) 720
HpyCH4V TGCA 3 cut(s) 532, 767, 780
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 345
HpyF3I CTNAG 6 cut(s) 274, 330, 474, 654, 789, 918
HpySE526I ACGT 1 cut(s) 720
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 7 cut(s) 82, 121, 140, 509, 680, 1020, 1032
HspAI GCGC 2 cut(s) 346, 651
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 4 cut(s) 120, 367, 694, 757
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 310, 313, 751
LweI GCATC 3 cut(s) 276, 391, 934
MaeI CTAG 3 cut(s) 437, 626, 794
MaeII ACGT 1 cut(s) 720
MaeIII GTNAC 3 cut(s) 154, 302, 412
MalI GATC 4 cut(s) 122, 369, 696, 759
MbiI CCGCTC 1 cut(s) 748
MboI GATC 4 cut(s) 120, 367, 694, 757
MboII GAAGA 7 cut(s) 298, 442, 455, 510, 920, 1000, 1005
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 3 cut(s) 505, 782, 886
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 4 cut(s) 201, 248, 425, 862
MluNI TGGCCA 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 516, 733
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 576
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 867, 951
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 3 cut(s) 150, 589, 843
MspR9I CCNGG 5 cut(s) 65, 590, 703, 805, 843
MvaI CCWGG 3 cut(s) 65, 703, 805
MwoI GCNNNNNNNGC 2 cut(s) 84, 345
NciI CCSGG 2 cut(s) 590, 843
NdeII GATC 4 cut(s) 120, 367, 694, 757
NheI GCTAGC 1 cut(s) 793
NlaIII CATG 7 cut(s) 82, 121, 140, 509, 680, 1020, 1032
NlaIV GGNNCC 3 cut(s) 187, 707, 847
NmuCI GTSAC 3 cut(s) 154, 302, 412
NspI RCATGY 2 cut(s) 82, 509
PceI AGGCCT 3 cut(s) 42, 63, 479
PciSI GCTCTTC 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 5 cut(s) 21, 359, 636, 683, 926
PkrI GCNGC 3 cut(s) 325, 328, 766
Psp6I CCWGG 3 cut(s) 63, 701, 803
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 3 cut(s) 63, 701, 803
PspN4I GGNNCC 3 cut(s) 187, 707, 847
PspPI GGNCC 2 cut(s) 185, 543
PsuI RGATCY 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 402, 461
RsaNI GTAC 2 cut(s) 401, 460
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 867, 951
SatI GCNGC 3 cut(s) 324, 327, 765
Sau3AI GATC 4 cut(s) 120, 367, 694, 757
Sau96I GGNCC 2 cut(s) 185, 543
ScrFI CCNGG 5 cut(s) 65, 590, 703, 805, 843
SduI GDGCHC 3 cut(s) 505, 782, 886
SfaNI GCATC 3 cut(s) 276, 391, 934
SfcI CTRYAG 2 cut(s) 363, 616
SinI GGWCC 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 44, 57
SmoI CTYRAG 2 cut(s) 44, 57
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 4 cut(s) 201, 248, 425, 862
SseBI AGGCCT 3 cut(s) 42, 63, 479
SsiI CCGC 3 cut(s) 293, 483, 748
SspMI CTAG 3 cut(s) 437, 626, 794
StuI AGGCCT 3 cut(s) 42, 63, 479
StyD4I CCNGG 5 cut(s) 63, 588, 701, 803, 841
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 400, 620
TaiI ACGT 1 cut(s) 723
TaqI TCGA 5 cut(s) 165, 564, 663, 688, 744
TasI AATT 4 cut(s) 201, 248, 425, 862
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 5 cut(s) 21, 359, 636, 683, 926
Tru1I TTAA 2 cut(s) 867, 951
Tru9I TTAA 2 cut(s) 867, 951
TscAI CASTG 3 cut(s) 403, 804, 1014
TseFI GTSAC 3 cut(s) 154, 302, 412
TseI GCWGC 3 cut(s) 323, 326, 764
Tsp45I GTSAC 3 cut(s) 154, 302, 412
TspDTI ATGAA 4 cut(s) 503, 633, 800, 1005
TspRI CASTG 3 cut(s) 403, 804, 1014
VneI GTGCAC 1 cut(s) 778
VpaK11BI GGWCC 1 cut(s) 543
XagI CCTNNNNNAGG 2 cut(s) 316, 473
XapI RAATTY 1 cut(s) 862
XceI RCATGY 2 cut(s) 82, 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 1014
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 3 cut(s) 437, 626, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.