RLG00000008376

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000435
Physical Location & Seq
Reverse (-)
29759111 .. 29762774
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008376

Sequence Viewer

Length: 990 bp
ATGGCCAGCATGACGAGGATGAAGCTCGGATCGCAAGGCCTGGAGGTCTCAGCTCAAGGACTGGGCTGCATGGGCATGTCTGCCTTCTATGGTGCCCCGAAGCCCGAACCCGACATGATCAAGCTCATCCACCAAGCCATCGACTCCGGCGTCACCTTCCTCGACACCTCCGACATGTACGGTCTCCACACCAACGAAATTCTCCTCGGCAAGGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAACTGGCCACCAAATGCGGTATCAGGTTTGCGGACAACAAAATGGAGGTTCAAGGCGACCCGGCATCTGTGAGAGCTGCTTGTGAAGGAAGCTTGAAGCGCCTTGGTGTTGCTTCTGTTGATCTCTATTATCAGATTAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGCTCAAGAAGCTAATTGAAGAAGGTAAAATAAAGTACATTGGTCTGTCTGAGGCGTCAGCTTCAACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGTTGGAGTGGTCCTTGTGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTATCATCGGGGGCAAATTTCATCGAAAATCTTCCCAATGATGATGCTCGAAAGAATATGCCCAGGTTCCAAGTAGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTCAGTGATCTTGCAGCAAGGAAGGGTTGCACCCCATCTCAACTAGCACTGGCCTGGGTTCATCACCAAGGAAATGAAGTGTGCCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTAAGGCTCTGTCTGTAAAACTGACACCAGAAGAAATGGCGAAGCTTGAATCTTTTGCTTCCGTAGATGCTGTTAAGGGCGACAGATATCCAGCTGGCATGAGTACTTGGATGAACTCTGAAACTCCACCACTATCTTCATGGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

330

Amino Acids

35.85

Weight (kDa)

6.67

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 297 7.7e-60 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 2 cut(s) 261, 275
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 2 cut(s) 3, 249
AcsI RAATTY 3 cut(s) 198, 613, 820
AcyI GRCGYC 2 cut(s) 150, 476
AfaI GTAC 3 cut(s) 179, 458, 940
AfiI CCNNNNNNNGG 2 cut(s) 211, 800
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 7 cut(s) 245, 296, 340, 407, 440, 486, 884
AjnI CCWGG 3 cut(s) 39, 659, 761
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 3 cut(s) 52, 188, 228
AlwI GGATC 1 cut(s) 37
AoxI GGCC 4 cut(s) 3, 37, 249, 759
ApeKI GCWGC 3 cut(s) 66, 320, 722
ApoI RAATTY 3 cut(s) 198, 613, 820
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 540
AsuC2I CCSGG 2 cut(s) 305, 801
AsuHPI GGTGA 3 cut(s) 145, 241, 764
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 2 cut(s) 97, 794
BalI TGGCCA 2 cut(s) 5, 251
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 426, 502
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 53, 307, 734
BccI CCATC 2 cut(s) 146, 751
BciT130I CCWGG 3 cut(s) 41, 661, 763
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 2 cut(s) 305, 801
BcoDI GTCTC 3 cut(s) 52, 188, 228
BfaI CTAG 3 cut(s) 584, 680, 752
BfoI RGCGCY 1 cut(s) 346
BisI GCNGC 3 cut(s) 67, 321, 723
BlsI GCNGC 3 cut(s) 68, 322, 724
BmcAI AGTACT 1 cut(s) 940
Bme1390I CCNGG 5 cut(s) 41, 305, 661, 763, 801
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 3 cut(s) 94, 665, 805
BmrFI CCNGG 5 cut(s) 41, 305, 661, 763, 801
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 3 cut(s) 317, 631, 892
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 39, 410
BpuMI CCSGG 2 cut(s) 305, 801
BsaBI GATNNNNATC 1 cut(s) 598
BsaHI GRCGYC 2 cut(s) 150, 476
BsaI GGTCTC 2 cut(s) 52, 188
BsaJI CCNNGG 5 cut(s) 205, 346, 659, 762, 775
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 800
Bse1I ACTGG 3 cut(s) 66, 252, 762
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 3 cut(s) 41, 661, 763
BseDI CCNNGG 5 cut(s) 205, 346, 659, 762, 775
BseGI GGATG 4 cut(s) 24, 126, 511, 951
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 2 cut(s) 211, 800
BseMII CTCAG 2 cut(s) 63, 462
BseNI ACTGG 3 cut(s) 66, 252, 762
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 2 cut(s) 97, 794
BseXI GCAGC 3 cut(s) 53, 307, 734
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 4 cut(s) 5, 39, 251, 761
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 3 cut(s) 147, 305, 801
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 211, 800
BsmAI GTCTC 3 cut(s) 52, 188, 228
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 4 cut(s) 5, 39, 251, 761
Bso31I GGTCTC 2 cut(s) 52, 188
Bsp1286I GDGCHC 4 cut(s) 97, 426, 502, 794
Bsp143I GATC 4 cut(s) 29, 117, 364, 715
BspACI CCGC 2 cut(s) 261, 275
BspANI GGCC 4 cut(s) 5, 39, 251, 761
BspCNI CTCAG 2 cut(s) 62, 463
BspLI GGNNCC 3 cut(s) 94, 665, 805
BspPI GGATC 1 cut(s) 37
BspQI GCTCTTC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 2 cut(s) 52, 188
BsrI ACTGG 3 cut(s) 66, 252, 762
BssECI CCNNGG 5 cut(s) 205, 346, 659, 762, 775
BssMI GATC 4 cut(s) 29, 117, 364, 715
BssNI GRCGYC 2 cut(s) 150, 476
BssT1I CCWWGG 2 cut(s) 346, 775
Bst2UI CCWGG 3 cut(s) 41, 661, 763
Bst4CI ACNGT 3 cut(s) 182, 415, 578
Bst6I CTCTTC 2 cut(s) 490, 583
BstACI GRCGYC 2 cut(s) 150, 476
BstC8I GCNNGC 2 cut(s) 7, 931
BstDEI CTNAG 2 cut(s) 49, 471
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 4 cut(s) 24, 126, 511, 951
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 4 cut(s) 32, 120, 367, 718
BstMAI GTCTC 3 cut(s) 52, 188, 228
BstMBI GATC 4 cut(s) 29, 117, 364, 715
BstMWI GCNNNNNNNGC 4 cut(s) 31, 72, 342, 430
BstNI CCWGG 3 cut(s) 41, 661, 763
BstNSI RCATGY 2 cut(s) 79, 178
BstSCI CCNGG 5 cut(s) 39, 303, 659, 761, 799
BstSLI GKGCMC 2 cut(s) 97, 794
BstV1I GCAGC 3 cut(s) 53, 307, 734
BsuRI GGCC 4 cut(s) 5, 39, 251, 761
BtsCI GGATG 4 cut(s) 24, 126, 511, 951
BtsIMutI CAGTG 2 cut(s) 718, 755
Cac8I GCNNGC 2 cut(s) 7, 931
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 540
CseI GACGC 2 cut(s) 139, 465
Csp6I GTAC 3 cut(s) 178, 457, 939
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 8 cut(s) 10, 70, 76, 115, 175, 503, 934, 975
CviQI GTAC 3 cut(s) 178, 457, 939
DdeI CTNAG 2 cut(s) 49, 471
DpnI GATC 4 cut(s) 31, 119, 366, 717
DpnII GATC 4 cut(s) 29, 117, 364, 715
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 2 cut(s) 3, 249
Eam1104I CTCTTC 2 cut(s) 490, 583
EarI CTCTTC 2 cut(s) 490, 583
Ecl136II GAGCTC 1 cut(s) 424
Eco130I CCWWGG 2 cut(s) 346, 775
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 426, 502
Eco31I GGTCTC 2 cut(s) 52, 188
Eco32I GATATC 1 cut(s) 923
Eco47I GGWCC 1 cut(s) 540
Eco53kI GAGCTC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 3 cut(s) 39, 659, 761
EcoRV GATATC 1 cut(s) 923
EcoT14I CCWWGG 2 cut(s) 346, 775
EcoT38I GRGCYC 2 cut(s) 426, 502
ErhI CCWWGG 2 cut(s) 346, 775
FaeI CATG 8 cut(s) 13, 73, 79, 118, 178, 506, 937, 978
FaqI GGGAC 1 cut(s) 383
FatI CATG 8 cut(s) 9, 69, 75, 114, 174, 502, 933, 974
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 67, 321, 723
FokI GGATG 4 cut(s) 31, 113, 498, 958
FriOI GRGCYC 2 cut(s) 426, 502
Fsp4HI GCNGC 3 cut(s) 67, 321, 723
FspBI CTAG 3 cut(s) 584, 680, 752
GlaI GCGC 1 cut(s) 344
GluI GCNGC 3 cut(s) 67, 321, 723
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 4 cut(s) 5, 39, 251, 761
HapII CCGG 3 cut(s) 147, 305, 801
HgaI GACGC 2 cut(s) 139, 465
HhaI GCGC 1 cut(s) 345
Hin1I GRCGYC 2 cut(s) 150, 476
Hin1II CATG 8 cut(s) 13, 73, 79, 118, 178, 506, 937, 978
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 334, 878
HinfI GANTC 4 cut(s) 143, 594, 708, 884
HpaII CCGG 3 cut(s) 147, 305, 801
HphI GGTGA 3 cut(s) 145, 241, 764
Hpy188I TCNGA 5 cut(s) 29, 172, 378, 472, 955
Hpy188III TCNNGA 1 cut(s) 427
HpyAV CCTTC 5 cut(s) 94, 166, 323, 437, 724
HpyCH4III ACNGT 3 cut(s) 182, 415, 578
HpyCH4V TGCA 5 cut(s) 69, 529, 572, 722, 738
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 72, 342, 430
HpyF3I CTNAG 2 cut(s) 49, 471
Hsp92I GRCGYC 2 cut(s) 150, 476
Hsp92II CATG 8 cut(s) 13, 73, 79, 118, 178, 506, 937, 978
HspAI GCGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 4 cut(s) 29, 117, 364, 715
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 3 cut(s) 53, 307, 734
LweI GCATC 3 cut(s) 317, 631, 892
MaeI CTAG 3 cut(s) 584, 680, 752
MaeIII GTNAC 2 cut(s) 151, 409
MalI GATC 4 cut(s) 31, 119, 366, 717
MboI GATC 4 cut(s) 29, 117, 364, 715
MboII GAAGA 6 cut(s) 452, 507, 600, 620, 878, 963
MhlI GDGCHC 4 cut(s) 97, 426, 502, 794
MlsI TGGCCA 2 cut(s) 5, 251
MluCI AATT 4 cut(s) 198, 435, 613, 820
MluNI TGGCCA 2 cut(s) 5, 251
MlyI GAGTC 2 cut(s) 137, 717
MmeI TCCRAC 2 cut(s) 195, 513
Mox20I TGGCCA 2 cut(s) 5, 251
MroXI GAANNNNTTC 1 cut(s) 627
MscI TGGCCA 2 cut(s) 5, 251
MseI TTAA 3 cut(s) 825, 837, 909
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 2 cut(s) 5, 251
MspA1I CMGCKG 1 cut(s) 929
MspI CCGG 3 cut(s) 147, 305, 801
MspR9I CCNGG 5 cut(s) 41, 305, 661, 763, 801
MvaI CCWGG 3 cut(s) 41, 661, 763
MwoI GCNNNNNNNGC 4 cut(s) 31, 72, 342, 430
NciI CCSGG 2 cut(s) 305, 801
NdeII GATC 4 cut(s) 29, 117, 364, 715
NlaIII CATG 8 cut(s) 13, 73, 79, 118, 178, 506, 937, 978
NlaIV GGNNCC 3 cut(s) 94, 665, 805
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 151, 409
NspI RCATGY 2 cut(s) 79, 178
PceI AGGCCT 1 cut(s) 39
PciI ACATGT 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 168
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 2 cut(s) 594, 884
PkrI GCNGC 3 cut(s) 68, 322, 724
PleI GAGTC 2 cut(s) 137, 716
PpsI GAGTC 2 cut(s) 137, 716
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 39, 659, 761
PspGI CCWGG 3 cut(s) 39, 659, 761
PspN4I GGNNCC 3 cut(s) 94, 665, 805
PspPI GGNCC 1 cut(s) 540
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 3 cut(s) 179, 458, 940
RsaNI GTAC 3 cut(s) 178, 457, 939
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 825, 837, 909
SatI GCNGC 3 cut(s) 67, 321, 723
Sau3AI GATC 4 cut(s) 29, 117, 364, 715
Sau96I GGNCC 1 cut(s) 540
ScaI AGTACT 1 cut(s) 940
SchI GAGTC 2 cut(s) 137, 717
ScrFI CCNGG 5 cut(s) 41, 305, 661, 763, 801
SduI GDGCHC 4 cut(s) 97, 426, 502, 794
SfaNI GCATC 3 cut(s) 317, 631, 892
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 54, 425
SmoI CTYRAG 2 cut(s) 54, 425
Sse9I AATT 4 cut(s) 198, 435, 613, 820
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 2 cut(s) 261, 275
SspI AATATT 1 cut(s) 699
SspMI CTAG 3 cut(s) 584, 680, 752
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 5 cut(s) 39, 303, 659, 761, 799
StyI CCWWGG 2 cut(s) 346, 775
TaaI ACNGT 3 cut(s) 182, 415, 578
TaqI TCGA 4 cut(s) 141, 162, 621, 646
TasI AATT 4 cut(s) 198, 435, 613, 820
TatI WGTACW 2 cut(s) 456, 938
TfiI GAWTC 2 cut(s) 594, 884
Tru1I TTAA 3 cut(s) 825, 837, 909
Tru9I TTAA 3 cut(s) 825, 837, 909
TscAI CASTG 2 cut(s) 718, 762
TseFI GTSAC 2 cut(s) 151, 409
TseI GCWGC 3 cut(s) 66, 320, 722
Tsp45I GTSAC 2 cut(s) 151, 409
TspDTI ATGAA 7 cut(s) 35, 500, 607, 758, 798, 962, 963
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 2 cut(s) 718, 762
VpaK11BI GGWCC 1 cut(s) 540
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 3 cut(s) 198, 613, 820
XceI RCATGY 2 cut(s) 79, 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 972
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 3 cut(s) 584, 680, 752
ZrmI AGTACT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.