Rmu_sc0007879.1_g000007

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007879.1
OG0000435
Physical Location & Seq
Forward (+)
54945 .. 57676
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007879.1_g000007.1.cds

Sequence Viewer

Length: 1020 bp
atgaggaggatgaagctcggatcacaaggcctggaggtctcagctcaaggactgggctgcatgggcatgtctgccttctatggcgccccgaagcccgaagccgacatgatcaagctcatccaccacgccatcgactccggcgtcaccttcctcgacaccgccgacctgtacggtccccacacaaacgaaattctcctcggcaaggctttgagtggaggggtgagagacaaggttgaactggccaccaaatgcggtatcaggtttgcggacaacaaaatggaggttcaaggcgacccggcatatgtgagagctgcttttgaaggaagcttgaaacgccttggtgttgcttctgttgatctctattatcagattaggattgacacccgtgtccccattgaagtcacggtgggggagctcaagaagctaattgaagagggtaaaataaagtacattggtctatctgaggcatcagcttcaacaataagaagagcccatgctgttcatccaataactgctgtggagctggagtggtccttgtggtcaagagatgtagaggaagaaataatccctacttgtcgggaacttggcattggcattgttgcatacagtcctctaggaagaggattcttatcatcgggggcaaatttcatcgaaaatcttcccaatgatgatgctcgaaagcatatgcccaggttccaagctgaaaacctagagcataataaaacaatatttgagcgagtaagtgatcttgcagcaaggaagggttgcaccccatctcaactggcactggcctgggttcatcaccaaggaaatgatgtgtgccctatacccggaaccaccaagattgaaaattttaaccagaacattaaggctctgtctgtgaaactgacaccagaagaaatggccgagcttgaatcttttgcttccgcagatgctgttaagggcgacagatatccgactggcataagtacttggaggaactctgaaactccaccactgtcttcatggaaagccacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

339

Amino Acids

37.19

Weight (kDa)

6.17

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 140, 386
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 4 cut(s) 159, 252, 266, 927
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 2 cut(s) 240, 903
AcsI RAATTY 3 cut(s) 189, 643, 850
AcyI GRCGYC 2 cut(s) 84, 141
AfaI GTAC 3 cut(s) 170, 449, 970
AfiI CCNNNNNNNGG 2 cut(s) 202, 830
AgsI TTSAA 9 cut(s) 236, 287, 320, 331, 398, 431, 477, 848, 914
AjnI CCWGG 3 cut(s) 30, 689, 791
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 2 cut(s) 43, 219
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 935
AoxI GGCC 4 cut(s) 28, 240, 789, 903
ApeKI GCWGC 3 cut(s) 57, 311, 752
ApoI RAATTY 3 cut(s) 189, 643, 850
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 173, 531
AsuC2I CCSGG 2 cut(s) 296, 831
AsuHPI GGTGA 3 cut(s) 136, 232, 794
AvaII GGWCC 2 cut(s) 173, 531
BaeGI GKGCMC 1 cut(s) 824
BalI TGGCCA 1 cut(s) 242
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 417, 493
BbsI GAAGAC 1 cut(s) 993
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 3 cut(s) 44, 298, 764
BccI CCATC 2 cut(s) 137, 781
BciT130I CCWGG 3 cut(s) 32, 691, 793
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 2 cut(s) 296, 831
BcoDI GTCTC 2 cut(s) 43, 219
BfaI CTAG 2 cut(s) 614, 710
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 3 cut(s) 58, 312, 753
BlsI GCNGC 3 cut(s) 59, 313, 754
BmcAI AGTACT 1 cut(s) 970
Bme1390I CCNGG 5 cut(s) 32, 296, 691, 793, 831
Bme18I GGWCC 2 cut(s) 173, 531
BmgT120I GGNCC 2 cut(s) 173, 531
BmiI GGNNCC 4 cut(s) 85, 175, 695, 835
BmrFI CCNGG 5 cut(s) 32, 296, 691, 793, 831
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 3 cut(s) 476, 661, 922
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 993
BpmI CTGGAG 2 cut(s) 53, 545
BpuEI CTTGAG 2 cut(s) 30, 401
BpuMI CCSGG 2 cut(s) 296, 831
BsaBI GATNNNNATC 1 cut(s) 628
BsaHI GRCGYC 2 cut(s) 84, 141
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 5 cut(s) 196, 337, 689, 792, 805
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 830
Bse1I ACTGG 5 cut(s) 57, 243, 786, 792, 964
Bse8I GATNNNNATC 1 cut(s) 628
BseBI CCWGG 3 cut(s) 32, 691, 793
BseDI CCNNGG 5 cut(s) 196, 337, 689, 792, 805
BseGI GGATG 3 cut(s) 15, 117, 502
BseJI GATNNNNATC 1 cut(s) 628
BseLI CCNNNNNNNGG 2 cut(s) 202, 830
BseMII CTCAG 2 cut(s) 54, 453
BseNI ACTGG 5 cut(s) 57, 243, 786, 792, 964
BseRI GAGGAG 2 cut(s) 19, 185
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 3 cut(s) 44, 298, 764
BshFI GGCC 4 cut(s) 30, 242, 791, 905
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 3 cut(s) 138, 296, 831
BslFI GGGAC 2 cut(s) 159, 374
BslI CCNNNNNNNGG 2 cut(s) 202, 830
BsmAI GTCTC 2 cut(s) 43, 219
BsmFI GGGAC 2 cut(s) 159, 374
BsnI GGCC 4 cut(s) 30, 242, 791, 905
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 3 cut(s) 417, 493, 824
Bsp143I GATC 4 cut(s) 20, 108, 355, 745
BspACI CCGC 4 cut(s) 159, 252, 266, 927
BspANI GGCC 4 cut(s) 30, 242, 791, 905
BspCNI CTCAG 2 cut(s) 53, 454
BspLI GGNNCC 4 cut(s) 85, 175, 695, 835
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 481
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 43
BsrI ACTGG 5 cut(s) 57, 243, 786, 792, 964
BssECI CCNNGG 5 cut(s) 196, 337, 689, 792, 805
BssMI GATC 4 cut(s) 20, 108, 355, 745
BssNI GRCGYC 2 cut(s) 84, 141
BssT1I CCWWGG 2 cut(s) 337, 805
Bst2UI CCWGG 3 cut(s) 32, 691, 793
Bst4CI ACNGT 4 cut(s) 173, 406, 608, 999
Bst6I CTCTTC 3 cut(s) 426, 481, 613
BstACI GRCGYC 2 cut(s) 84, 141
BstDEI CTNAG 2 cut(s) 40, 462
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 3 cut(s) 15, 117, 502
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 4 cut(s) 23, 111, 358, 748
BstMAI GTCTC 2 cut(s) 43, 219
BstMBI GATC 4 cut(s) 20, 108, 355, 745
BstMWI GCNNNNNNNGC 3 cut(s) 63, 333, 421
BstNI CCWGG 3 cut(s) 32, 691, 793
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 5 cut(s) 30, 294, 689, 791, 829
BstSLI GKGCMC 1 cut(s) 824
BstV1I GCAGC 3 cut(s) 44, 298, 764
BstV2I GAAGAC 1 cut(s) 993
BsuRI GGCC 4 cut(s) 30, 242, 791, 905
BtsCI GGATG 3 cut(s) 15, 117, 502
BtsIMutI CAGTG 2 cut(s) 785, 995
CaiI CAGNNNCTG 1 cut(s) 935
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 173, 531
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 169, 448, 969
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 5 cut(s) 61, 67, 106, 494, 1005
CviQI GTAC 3 cut(s) 169, 448, 969
DdeI CTNAG 2 cut(s) 40, 462
DinI GGCGCC 1 cut(s) 85
DpnI GATC 4 cut(s) 22, 110, 357, 747
DpnII GATC 4 cut(s) 20, 108, 355, 745
DrdI GACNNNNNNGTC 2 cut(s) 140, 386
DseDI GACNNNNNNGTC 2 cut(s) 140, 386
EaeI YGGCCR 2 cut(s) 240, 903
Eam1104I CTCTTC 3 cut(s) 426, 481, 613
EarI CTCTTC 3 cut(s) 426, 481, 613
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 337, 805
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 2 cut(s) 417, 493
Eco31I GGTCTC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 953
Eco47I GGWCC 2 cut(s) 173, 531
Eco53kI GAGCTC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 415
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoRII CCWGG 3 cut(s) 30, 689, 791
EcoRV GATATC 1 cut(s) 953
EcoT14I CCWWGG 2 cut(s) 337, 805
EcoT38I GRGCYC 2 cut(s) 417, 493
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 337, 805
FaeI CATG 5 cut(s) 64, 70, 109, 497, 1008
FaqI GGGAC 2 cut(s) 159, 374
FatI CATG 5 cut(s) 60, 66, 105, 493, 1004
FauNDI CATATG 2 cut(s) 301, 684
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 58, 312, 753
FokI GGATG 3 cut(s) 22, 104, 489
FriOI GRGCYC 2 cut(s) 417, 493
Fsp4HI GCNGC 3 cut(s) 58, 312, 753
FspBI CTAG 2 cut(s) 614, 710
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 58, 312, 753
GsuI CTGGAG 2 cut(s) 53, 545
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 4 cut(s) 30, 242, 791, 905
HapII CCGG 3 cut(s) 138, 296, 831
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 2 cut(s) 84, 141
Hin1II CATG 5 cut(s) 64, 70, 109, 497, 1008
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 3 cut(s) 134, 624, 914
HpaII CCGG 3 cut(s) 138, 296, 831
HphI GGTGA 3 cut(s) 136, 232, 794
Hpy188I TCNGA 5 cut(s) 20, 369, 463, 957, 985
Hpy188III TCNNGA 3 cut(s) 418, 543, 578
HpyAV CCTTC 4 cut(s) 85, 157, 314, 754
HpyCH4III ACNGT 4 cut(s) 173, 406, 608, 999
HpyCH4V TGCA 4 cut(s) 60, 602, 752, 768
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 333, 421
HpyF3I CTNAG 2 cut(s) 40, 462
Hsp92I GRCGYC 2 cut(s) 84, 141
Hsp92II CATG 5 cut(s) 64, 70, 109, 497, 1008
HspAI GCGC 1 cut(s) 84
KasI GGCGCC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 4 cut(s) 20, 108, 355, 745
LguI GCTCTTC 1 cut(s) 481
LmnI GCTCC 2 cut(s) 412, 520
Lsp1109I GCAGC 3 cut(s) 44, 298, 764
LweI GCATC 3 cut(s) 476, 661, 922
MaeI CTAG 2 cut(s) 614, 710
MaeIII GTNAC 2 cut(s) 142, 400
MalI GATC 4 cut(s) 22, 110, 357, 747
MboI GATC 4 cut(s) 20, 108, 355, 745
MboII GAAGA 7 cut(s) 443, 498, 569, 630, 650, 908, 993
MhlI GDGCHC 3 cut(s) 417, 493, 824
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 4 cut(s) 189, 426, 643, 850
MluNI TGGCCA 1 cut(s) 242
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 980
Mox20I TGGCCA 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 657
MscI TGGCCA 1 cut(s) 242
MseI TTAA 3 cut(s) 855, 867, 939
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 3 cut(s) 138, 296, 831
MspR9I CCNGG 5 cut(s) 32, 296, 691, 793, 831
MvaI CCWGG 3 cut(s) 32, 691, 793
MwoI GCNNNNNNNGC 3 cut(s) 63, 333, 421
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 2 cut(s) 296, 831
NdeI CATATG 2 cut(s) 301, 684
NdeII GATC 4 cut(s) 20, 108, 355, 745
NlaIII CATG 5 cut(s) 64, 70, 109, 497, 1008
NlaIV GGNNCC 4 cut(s) 85, 175, 695, 835
NmeAIII GCCGAG 2 cut(s) 177, 931
NmuCI GTSAC 2 cut(s) 142, 400
NspI RCATGY 1 cut(s) 70
PceI AGGCCT 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 481
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 159
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 624, 914
PkrI GCNGC 3 cut(s) 59, 313, 754
PleI GAGTC 1 cut(s) 128
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 3 cut(s) 30, 689, 791
PspGI CCWGG 3 cut(s) 30, 689, 791
PspN4I GGNNCC 4 cut(s) 85, 175, 695, 835
PspPI GGNCC 2 cut(s) 173, 531
PstNI CAGNNNCTG 1 cut(s) 935
RsaI GTAC 3 cut(s) 170, 449, 970
RsaNI GTAC 3 cut(s) 169, 448, 969
RseI CAYNNNNRTG 1 cut(s) 65
SacI GAGCTC 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 481
SaqAI TTAA 3 cut(s) 855, 867, 939
SatI GCNGC 3 cut(s) 58, 312, 753
Sau3AI GATC 4 cut(s) 20, 108, 355, 745
Sau96I GGNCC 2 cut(s) 173, 531
ScaI AGTACT 1 cut(s) 970
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 5 cut(s) 32, 296, 691, 793, 831
SduI GDGCHC 3 cut(s) 417, 493, 824
SfaNI GCATC 3 cut(s) 476, 661, 922
SfoI GGCGCC 1 cut(s) 85
SinI GGWCC 2 cut(s) 173, 531
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 45, 416
SmoI CTYRAG 2 cut(s) 45, 416
Sse9I AATT 4 cut(s) 189, 426, 643, 850
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 4 cut(s) 159, 252, 266, 927
SspDI GGCGCC 1 cut(s) 83
SspI AATATT 1 cut(s) 729
SspMI CTAG 2 cut(s) 614, 710
SstI GAGCTC 1 cut(s) 417
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 5 cut(s) 30, 294, 689, 791, 829
StyI CCWWGG 2 cut(s) 337, 805
TaaI ACNGT 4 cut(s) 173, 406, 608, 999
TaqI TCGA 4 cut(s) 132, 153, 651, 676
TasI AATT 4 cut(s) 189, 426, 643, 850
TatI WGTACW 2 cut(s) 447, 968
TfiI GAWTC 2 cut(s) 624, 914
Tru1I TTAA 3 cut(s) 855, 867, 939
Tru9I TTAA 3 cut(s) 855, 867, 939
TscAI CASTG 2 cut(s) 792, 1002
TseFI GTSAC 2 cut(s) 142, 400
TseI GCWGC 3 cut(s) 57, 311, 752
Tsp45I GTSAC 2 cut(s) 142, 400
TspDTI ATGAA 5 cut(s) 26, 491, 637, 788, 993
TspRI CASTG 2 cut(s) 792, 1002
VpaK11BI GGWCC 2 cut(s) 173, 531
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 3 cut(s) 189, 643, 850
XceI RCATGY 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 1002
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 2 cut(s) 614, 710
ZrmI AGTACT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.