Rmu_sc0007879.1_g000001

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007879.1
OG0000435
Physical Location & Seq
Forward (+)
2305 .. 6658
4354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007879.1_g000001.1.cds

Sequence Viewer

Length: 915 bp
atggcgagcatgaggaggatgaagctcgggtcacaaggcctggaggtctcagcacaaggactgggctgcatgggcatgtctgccttctatggcgccccgaagcccgaacccgacatgatcaatctcatccaccacgccatcgactccggtgtcaccttcctcgacaccgccgacctgtacggtccccacaccaacgaaattctcctcggcaaggctttgagtggaggggtgagagacaaggttgaactggccaccaaattcggtatcaggtttgcggacaacaaaatggaggttcaaggcgacccggcatatgtgagagctgcttgtgaagaaagcttgaaacgccttggtgttgcttctgttgatctctgttatcagattaggattgacacccgtgtccccattgaagtcacgctagagtggtccttgtggtcaagagatgtagaggaagaaataatccctacttgtcgggaacttggcattggcattgttgcatacagtcctctaggaagaggattcttatcatcgggggcaaatttcatcgaaaatcttcccagtgatgatgctcgaaagaatatgcccaggttccaagctgaaaacctagagcataataaaacaatatttgagcgagtaagtgatcttgcagcaaggaagggttgcaccccatctcaactagcactagcctgggttcatcaccaaggaaatgatgtgtgccctatacccggaaccaccaagattgagaattttaaccagaacattaaggctttatctgtgaaactgtcaccagaagaaatggccgagcttgaatcttttgcttccgcaaatgctgttaagggcgacagatatccgaatagctgcaacagtacttggatgaactctgacactccaccactgtcttcatggaaaactatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

304

Amino Acids

33.39

Weight (kDa)

5.48

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 3 cut(s) 168, 275, 819
AcoI YGGCCR 2 cut(s) 249, 795
AcsI RAATTY 4 cut(s) 198, 257, 535, 742
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 179, 865
AfiI CCNNNNNNNGG 2 cut(s) 211, 722
AgsI TTSAA 5 cut(s) 245, 296, 340, 407, 806
AjnI CCWGG 3 cut(s) 39, 581, 683
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 6 cut(s) 25, 320, 336, 593, 802, 855
AluI AGCT 6 cut(s) 25, 320, 336, 593, 802, 855
Alw26I GTCTC 2 cut(s) 52, 228
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 3 cut(s) 37, 249, 795
ApeKI GCWGC 4 cut(s) 66, 320, 644, 855
ApoI RAATTY 4 cut(s) 198, 257, 535, 742
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 182, 423
AsuC2I CCSGG 2 cut(s) 305, 723
AsuHPI GGTGA 4 cut(s) 145, 241, 686, 774
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 182, 423
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 888
BbvI GCAGC 4 cut(s) 53, 307, 656, 842
BccI CCATC 2 cut(s) 146, 673
BciT130I CCWGG 3 cut(s) 41, 583, 685
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 2 cut(s) 305, 723
BcoDI GTCTC 2 cut(s) 52, 228
BfaI CTAG 5 cut(s) 416, 506, 602, 674, 680
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 4 cut(s) 67, 321, 645, 856
BlsI GCNGC 4 cut(s) 68, 322, 646, 857
BmcAI AGTACT 1 cut(s) 865
Bme1390I CCNGG 5 cut(s) 41, 305, 583, 685, 723
Bme18I GGWCC 2 cut(s) 182, 423
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 182, 423
BmiI GGNNCC 4 cut(s) 94, 184, 587, 727
BmrFI CCNGG 5 cut(s) 41, 305, 583, 685, 723
BmrI ACTGGG 2 cut(s) 71, 549
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 2 cut(s) 71, 549
BpiI GAAGAC 1 cut(s) 888
BpmI CTGGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 305, 723
BsaBI GATNNNNATC 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 5 cut(s) 205, 346, 581, 684, 697
BsaWI WCCGGW 1 cut(s) 146
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 722
Bse1I ACTGG 3 cut(s) 66, 252, 555
Bse8I GATNNNNATC 1 cut(s) 520
BseBI CCWGG 3 cut(s) 41, 583, 685
BseDI CCNNGG 5 cut(s) 205, 346, 581, 684, 697
BseGI GGATG 3 cut(s) 24, 126, 876
BseJI GATNNNNATC 1 cut(s) 520
BseLI CCNNNNNNNGG 2 cut(s) 211, 722
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 3 cut(s) 66, 252, 555
BseRI GAGGAG 2 cut(s) 28, 194
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 4 cut(s) 53, 307, 656, 842
BshFI GGCC 3 cut(s) 39, 251, 797
BshNI GGYRCC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 147, 305, 723
BslFI GGGAC 2 cut(s) 168, 383
BslI CCNNNNNNNGG 2 cut(s) 211, 722
BsmAI GTCTC 2 cut(s) 52, 228
BsmFI GGGAC 2 cut(s) 168, 383
BsnI GGCC 3 cut(s) 39, 251, 797
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 716
Bsp143I GATC 3 cut(s) 117, 364, 637
BspACI CCGC 3 cut(s) 168, 275, 819
BspANI GGCC 3 cut(s) 39, 251, 797
BspCNI CTCAG 1 cut(s) 62
BspLI GGNNCC 4 cut(s) 94, 184, 587, 727
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 3 cut(s) 66, 252, 555
BssECI CCNNGG 5 cut(s) 205, 346, 581, 684, 697
BssMI GATC 3 cut(s) 117, 364, 637
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 346, 697
Bst2UI CCWGG 3 cut(s) 41, 583, 685
Bst4CI ACNGT 5 cut(s) 182, 500, 780, 863, 894
Bst6I CTCTTC 1 cut(s) 505
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 49
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 3 cut(s) 24, 126, 876
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 120, 367, 640
BstMAI GTCTC 2 cut(s) 52, 228
BstMBI GATC 3 cut(s) 117, 364, 637
BstMWI GCNNNNNNNGC 2 cut(s) 72, 342
BstNI CCWGG 3 cut(s) 41, 583, 685
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 5 cut(s) 39, 303, 581, 683, 721
BstSLI GKGCMC 1 cut(s) 716
BstV1I GCAGC 4 cut(s) 53, 307, 656, 842
BstV2I GAAGAC 1 cut(s) 888
BsuRI GGCC 3 cut(s) 39, 251, 797
BtsCI GGATG 3 cut(s) 24, 126, 876
BtsIMutI CAGTG 2 cut(s) 562, 890
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 182, 423
Csp6I GTAC 2 cut(s) 178, 864
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviAII CATG 5 cut(s) 10, 70, 76, 115, 900
CviQI GTAC 2 cut(s) 178, 864
DdeI CTNAG 1 cut(s) 49
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 119, 366, 639
DpnII GATC 3 cut(s) 117, 364, 637
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 2 cut(s) 249, 795
Eam1104I CTCTTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 346, 697
Eco147I AGGCCT 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 182, 423
Eco88I CYCGRG 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 3 cut(s) 39, 581, 683
EcoRV GATATC 1 cut(s) 845
EcoT14I CCWWGG 2 cut(s) 346, 697
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 346, 697
FaeI CATG 5 cut(s) 13, 73, 79, 118, 903
FaqI GGGAC 2 cut(s) 168, 383
FatI CATG 5 cut(s) 9, 69, 75, 114, 899
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 4 cut(s) 67, 321, 645, 856
FokI GGATG 3 cut(s) 31, 113, 883
Fsp4HI GCNGC 4 cut(s) 67, 321, 645, 856
FspBI CTAG 5 cut(s) 416, 506, 602, 674, 680
GlaI GCGC 1 cut(s) 94
GluI GCNGC 4 cut(s) 67, 321, 645, 856
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 3 cut(s) 39, 251, 797
HapII CCGG 3 cut(s) 147, 305, 723
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 5 cut(s) 13, 73, 79, 118, 903
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 3 cut(s) 143, 516, 806
HpaII CCGG 3 cut(s) 147, 305, 723
HphI GGTGA 4 cut(s) 145, 241, 686, 774
Hpy188I TCNGA 3 cut(s) 378, 849, 880
Hpy188III TCNNGA 2 cut(s) 435, 470
HpyAV CCTTC 3 cut(s) 94, 166, 646
HpyCH4III ACNGT 5 cut(s) 182, 500, 780, 863, 894
HpyCH4V TGCA 5 cut(s) 69, 494, 644, 660, 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 342
HpyF3I CTNAG 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 5 cut(s) 13, 73, 79, 118, 903
HspAI GCGC 1 cut(s) 93
KasI GGCGCC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 117, 364, 637
Lsp1109I GCAGC 4 cut(s) 53, 307, 656, 842
LweI GCATC 1 cut(s) 553
MaeI CTAG 5 cut(s) 416, 506, 602, 674, 680
MaeIII GTNAC 4 cut(s) 30, 151, 409, 780
MalI GATC 3 cut(s) 119, 366, 639
MboI GATC 3 cut(s) 117, 364, 637
MboII GAAGA 6 cut(s) 341, 461, 522, 542, 800, 888
MhlI GDGCHC 1 cut(s) 716
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 4 cut(s) 198, 257, 535, 742
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 137
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 549
MscI TGGCCA 1 cut(s) 251
MseI TTAA 3 cut(s) 747, 759, 831
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 3 cut(s) 147, 305, 723
MspR9I CCNGG 5 cut(s) 41, 305, 583, 685, 723
MvaI CCWGG 3 cut(s) 41, 583, 685
MwoI GCNNNNNNNGC 2 cut(s) 72, 342
NarI GGCGCC 1 cut(s) 93
NciI CCSGG 2 cut(s) 305, 723
NdeI CATATG 1 cut(s) 310
NdeII GATC 3 cut(s) 117, 364, 637
NlaIII CATG 5 cut(s) 13, 73, 79, 118, 903
NlaIV GGNNCC 4 cut(s) 94, 184, 587, 727
NmeAIII GCCGAG 2 cut(s) 186, 823
NmuCI GTSAC 4 cut(s) 30, 151, 409, 780
NspI RCATGY 1 cut(s) 79
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 2 cut(s) 516, 806
PkrI GCNGC 4 cut(s) 68, 322, 646, 857
PleI GAGTC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 3 cut(s) 39, 581, 683
PspGI CCWGG 3 cut(s) 39, 581, 683
PspN4I GGNNCC 4 cut(s) 94, 184, 587, 727
PspPI GGNCC 2 cut(s) 182, 423
RsaI GTAC 2 cut(s) 179, 865
RsaNI GTAC 2 cut(s) 178, 864
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 3 cut(s) 747, 759, 831
SatI GCNGC 4 cut(s) 67, 321, 645, 856
Sau3AI GATC 3 cut(s) 117, 364, 637
Sau96I GGNCC 2 cut(s) 182, 423
ScaI AGTACT 1 cut(s) 865
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 5 cut(s) 41, 305, 583, 685, 723
SduI GDGCHC 1 cut(s) 716
SfaNI GCATC 1 cut(s) 553
SfoI GGCGCC 1 cut(s) 94
SinI GGWCC 2 cut(s) 182, 423
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 4 cut(s) 198, 257, 535, 742
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 3 cut(s) 168, 275, 819
SspDI GGCGCC 1 cut(s) 92
SspI AATATT 1 cut(s) 621
SspMI CTAG 5 cut(s) 416, 506, 602, 674, 680
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 5 cut(s) 39, 303, 581, 683, 721
StyI CCWWGG 2 cut(s) 346, 697
TaaI ACNGT 5 cut(s) 182, 500, 780, 863, 894
TaqI TCGA 4 cut(s) 141, 162, 543, 568
TasI AATT 4 cut(s) 198, 257, 535, 742
TatI WGTACW 1 cut(s) 863
TfiI GAWTC 2 cut(s) 516, 806
Tru1I TTAA 3 cut(s) 747, 759, 831
Tru9I TTAA 3 cut(s) 747, 759, 831
TscAI CASTG 2 cut(s) 562, 897
TseFI GTSAC 4 cut(s) 30, 151, 409, 780
TseI GCWGC 4 cut(s) 66, 320, 644, 855
Tsp45I GTSAC 4 cut(s) 30, 151, 409, 780
TspDTI ATGAA 5 cut(s) 35, 529, 680, 887, 888
TspRI CASTG 2 cut(s) 562, 897
VpaK11BI GGWCC 2 cut(s) 182, 423
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 4 cut(s) 198, 257, 535, 742
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 897
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 5 cut(s) 416, 506, 602, 674, 680
ZrmI AGTACT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.