Rorug04G0105400

reductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
16329415 .. 16330084
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0105400.1

Sequence Viewer

Length: 549 bp
ATGTCAATCCCTCCACTTGTGAAACGAAAGCTGGTCTTCTCTGATCAGGAGGAAGACATTGATCACAACCTTTTCCCCACCCTTGAATACTCTGTTTCATCTTTCAGCTCCACTCCTCTTGTACCTAAGCTTATGGATCCCAAACCAATGCCTGCATTATTGCTACCTAAAGCAAGTCAGCTAAGTCCTAGATCCCCCATTAACCCTCTATATGACCATATCGGTTATGAAGTGTCTCCATTGCCACAGCTTCATCGTCGAAGTACTTCCACATTGAATGGAGGTCAAGAAAGTGTTGTTAAGCATAGAGTGTATAGGACCCCTAACAAGAATGATGCTCTAGCTGGTAATGATTGTTTTTCCAGCTTGCCAAAAAGAGATGGTGTAAGCAAAGAACCCATGACCCCAACATCTCCATTTGGTGATTCAGTCATTTCCACCGAAAGAAAAGCACCCAAATTACTTTTCCCAGATCCAACTACAGGTGAGGGCTATCCAGATGTTCCTGACACACAAAGTCCAGACTCTGTAGGTAATTGGAGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

20.07

Weight (kDa)

6.42

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 131, 144, 186, 467
AfaI GTAC 2 cut(s) 123, 265
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 2 cut(s) 86, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AluBI AGCT 7 cut(s) 31, 108, 130, 181, 250, 344, 366
AluI AGCT 7 cut(s) 31, 108, 130, 181, 250, 344, 366
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 4 cut(s) 131, 144, 186, 467
AlwNI CAGNNNCTG 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 434, 497
AvaII GGWCC 1 cut(s) 318
BamHI GGATCC 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 28, 60
BccI CCATC 1 cut(s) 374
BclI TGATCA 2 cut(s) 43, 61
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 2 cut(s) 189, 341
BfmI CTRYAG 2 cut(s) 480, 528
BmcAI AGTACT 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 138, 320
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 2 cut(s) 28, 60
Bpu10I CCTNAGC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 240
Bsp143I GATC 5 cut(s) 43, 61, 136, 191, 472
BspLI GGNNCC 2 cut(s) 138, 320
BspPI GGATC 4 cut(s) 131, 144, 186, 467
BsrDI GCAATG 1 cut(s) 239
BssMI GATC 5 cut(s) 43, 61, 136, 191, 472
BstC8I GCNNGC 2 cut(s) 153, 368
BstDEI CTNAG 2 cut(s) 126, 182
BstKTI GATC 5 cut(s) 46, 64, 139, 194, 475
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 5 cut(s) 43, 61, 136, 191, 472
BstSFI CTRYAG 2 cut(s) 480, 528
BstV2I GAAGAC 2 cut(s) 28, 60
BstX2I RGATCY 3 cut(s) 136, 191, 472
BstYI RGATCY 3 cut(s) 136, 191, 472
Cac8I GCNNGC 2 cut(s) 153, 368
CaiI CAGNNNCTG 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 122, 264
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 400
CviJI RGCY 8 cut(s) 31, 108, 130, 181, 250, 344, 366, 492
CviKI_1 RGCY 8 cut(s) 31, 108, 130, 181, 250, 344, 366, 492
CviQI GTAC 2 cut(s) 122, 264
DdeI CTNAG 2 cut(s) 126, 182
DpnI GATC 5 cut(s) 45, 63, 138, 193, 474
DpnII GATC 5 cut(s) 43, 61, 136, 191, 472
Eco47I GGWCC 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 318
FaeI CATG 1 cut(s) 403
FaiI YATR 8 cut(s) 134, 211, 213, 219, 228, 306, 315, 401
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 1 cut(s) 399
FbaI TGATCA 2 cut(s) 43, 61
FspBI CTAG 2 cut(s) 189, 341
Hin1II CATG 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 425, 524
HphI GGTGA 2 cut(s) 434, 497
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 6 cut(s) 47, 287, 497, 506, 521, 546
Hpy99I CGWCG 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 126, 182
Hsp92II CATG 1 cut(s) 403
Ksp22I TGATCA 2 cut(s) 43, 61
Kzo9I GATC 5 cut(s) 43, 61, 136, 191, 472
LmnI GCTCC 1 cut(s) 113
LweI GCATC 1 cut(s) 325
MaeI CTAG 2 cut(s) 189, 341
MalI GATC 5 cut(s) 45, 63, 138, 193, 474
MboI GATC 5 cut(s) 43, 61, 136, 191, 472
MboII GAAGA 2 cut(s) 28, 65
MflI RGATCY 3 cut(s) 136, 191, 472
MluCI AATT 2 cut(s) 458, 535
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 7 cut(s) 21, 43, 126, 216, 275, 481, 534
MroXI GAANNNNTTC 1 cut(s) 265
MseI TTAA 2 cut(s) 201, 300
NdeII GATC 5 cut(s) 43, 61, 136, 191, 472
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 2 cut(s) 138, 320
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 425
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PpuMI RGGWCCY 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 138, 320
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 3 cut(s) 136, 191, 472
RsaI GTAC 2 cut(s) 123, 265
RsaNI GTAC 2 cut(s) 122, 264
SaqAI TTAA 2 cut(s) 201, 300
Sau3AI GATC 5 cut(s) 43, 61, 136, 191, 472
Sau96I GGNCC 1 cut(s) 318
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 518
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 2 cut(s) 480, 528
SinI GGWCC 1 cut(s) 318
Sse9I AATT 2 cut(s) 458, 535
SspMI CTAG 2 cut(s) 189, 341
TaqI TCGA 1 cut(s) 259
TasI AATT 2 cut(s) 458, 535
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 201, 300
Tru9I TTAA 2 cut(s) 201, 300
TspDTI ATGAA 3 cut(s) 87, 242, 243
VpaK11BI GGWCC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 2 cut(s) 189, 341
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.