Rmu_sc0029727.1_g000001

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029727.1
OG0000435
Physical Location & Seq
Forward (+)
670 .. 1023
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029727.1_g000001.1.cds

Sequence Viewer

Length: 354 bp
atgctcaaatatggactgcgttggttgcagaattttcccaggttccaagctgaaaacctagagcataataaaacaatatttgagcgagtaagtgatcttgcagcaaggaagggttgcaccccatctcaattagcactggcctgggttcatcaccaaggaaatgatgtgtgtcctatacccggaaccaccaagattgagaattttaaccagaacattaaggctctgtctgtgaaactgacaccagaagaaatggctgagcttgaatcttttgctgccgcagatgctgttaagggtgacaggtatcagactggcaacagtacttggatgaactctgacactccaccgctgtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

117

Amino Acids

13.15

Weight (kDa)

6.27

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 276, 344
AcsI RAATTY 2 cut(s) 31, 199
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 2 cut(s) 38, 140
AluBI AGCT 2 cut(s) 50, 259
AluI AGCT 2 cut(s) 50, 259
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 101, 272
ApoI RAATTY 2 cut(s) 31, 199
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 143, 305
BbvI GCAGC 2 cut(s) 113, 259
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 40, 142
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 59
BisI GCNGC 3 cut(s) 102, 273, 276
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 3 cut(s) 103, 274, 277
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 3 cut(s) 40, 142, 180
BmiI GGNNCC 2 cut(s) 44, 184
BmrFI CCNGG 3 cut(s) 40, 142, 180
BmsI GCATC 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 38, 141, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 141, 313
BseBI CCWGG 2 cut(s) 40, 142
BseDI CCNNGG 3 cut(s) 38, 141, 154
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 2 cut(s) 141, 313
BseXI GCAGC 2 cut(s) 113, 259
BshFI GGCC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 94
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 2 cut(s) 276, 344
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 44, 184
BsrI ACTGG 2 cut(s) 141, 313
BssECI CCNNGG 3 cut(s) 38, 141, 154
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 2 cut(s) 40, 142
Bst4CI ACNGT 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 25, 281
BstNI CCWGG 2 cut(s) 40, 142
BstSCI CCNGG 3 cut(s) 38, 140, 178
BstV1I GCAGC 2 cut(s) 113, 259
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 134
CaiI CAGNNNCTG 1 cut(s) 284
Csp6I GTAC 1 cut(s) 318
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviJI RGCY 5 cut(s) 50, 140, 221, 254, 259
CviKI_1 RGCY 5 cut(s) 50, 140, 221, 254, 259
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 38, 140
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaiI YATR 3 cut(s) 12, 66, 176
Fnu4HI GCNGC 3 cut(s) 102, 273, 276
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 102, 273, 276
FspBI CTAG 1 cut(s) 59
GluI GCNGC 3 cut(s) 102, 273, 276
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 180
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 143, 305
Hpy188I TCNGA 2 cut(s) 306, 334
Hpy188III TCNNGA 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 28, 101, 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 281
HpyF3I CTNAG 1 cut(s) 255
Kzo9I GATC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 113, 259
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 257
MluCI AATT 3 cut(s) 31, 128, 199
MseI TTAA 3 cut(s) 204, 216, 288
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 3 cut(s) 40, 142, 180
MvaI CCWGG 2 cut(s) 40, 142
MwoI GCNNNNNNNGC 2 cut(s) 25, 281
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 44, 184
NmuCI GTSAC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 103, 274, 277
Psp6I CCWGG 2 cut(s) 38, 140
PspGI CCWGG 2 cut(s) 38, 140
PspN4I GGNNCC 2 cut(s) 44, 184
PstNI CAGNNNCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 3 cut(s) 204, 216, 288
SatI GCNGC 3 cut(s) 102, 273, 276
Sau3AI GATC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 319
ScrFI CCNGG 3 cut(s) 40, 142, 180
SetI ASST 5 cut(s) 44, 52, 60, 261, 302
SfaNI GCATC 1 cut(s) 271
Sse9I AATT 3 cut(s) 31, 128, 199
SsiI CCGC 2 cut(s) 276, 344
SspI AATATT 1 cut(s) 78
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 3 cut(s) 38, 140, 178
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 317
TasI AATT 3 cut(s) 31, 128, 199
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 204, 216, 288
Tru9I TTAA 3 cut(s) 204, 216, 288
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 101, 272
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 137, 341
TspRI CASTG 1 cut(s) 141
XapI RAATTY 2 cut(s) 31, 199
XspI CTAG 1 cut(s) 59
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.