Rroxscaffold_5G00355840

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000435
Physical Location & Seq
Forward (+)
34864800 .. 34873270
8471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355840.1

Sequence Viewer

Length: 555 bp
ATGCCTTATGTTGCTACTGCTGGTAAATTGCTCGAACTGATTGGGACATTTTGCAGTTGGATAATGGTTCTTGAAAGCTTGCAATTACCCTTGACAACCAGTTCTAGCCAACCTTATCAGTGGATGACCAAGGACAGCTCCGAGGAGCTAATGTGGGGGGAGCTCAAGAAGCTAATTGAAGAGGGTAAAATAAAGTATATTGGCTTGTCTGAGGCATCAACTTCGGCAATAAGAAGGGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATGTAGAAGAAGAAATAATTCCTACTTGTCGGGAACTTGGCATTGGCATTGGCATTGTTGCATACAGTCCTCTGGGAAGAGGATCCTTATCATTGGGGGCAAAATTCATCAAAAATCTTCCCAATGATGATTCTCGAAAGAATATGCCCAGGTTCCAAGTTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAATGTTGCTAAGGGCGGCAGATATCAGACTGGCATCATGGCATCAGTACTTGGATGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

184

Amino Acids

20.9

Weight (kDa)

5.84

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 44 - 161 5.8e-23 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 506
AclWI GGATC 2 cut(s) 372, 385
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 539
AgsI TTSAA 3 cut(s) 74, 179, 458
AjnI CCWGG 1 cut(s) 443
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 6 cut(s) 78, 138, 148, 163, 172, 271
AluI AGCT 6 cut(s) 78, 138, 148, 163, 172, 271
Alw21I GWGCWC 1 cut(s) 165
AlwI GGATC 2 cut(s) 372, 385
AoxI GGCC 1 cut(s) 237
ApaI GGGCCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 3 cut(s) 237, 238, 279
AvaII GGWCC 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 241
BamHI GGATCC 1 cut(s) 377
BanII GRGCYC 2 cut(s) 165, 241
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 1 cut(s) 445
BfaI CTAG 2 cut(s) 105, 464
BisI GCNGC 2 cut(s) 269, 507
BlsI GCNGC 2 cut(s) 270, 508
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 1 cut(s) 445
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 3 cut(s) 237, 238, 279
BmiI GGNNCC 3 cut(s) 239, 379, 449
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 3 cut(s) 224, 533, 541
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 129, 141, 443
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bse1I ACTGG 2 cut(s) 99, 525
Bse8I GATNNNNATC 1 cut(s) 382
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 3 cut(s) 129, 141, 443
BseGI GGATG 3 cut(s) 129, 250, 550
BseJI GATNNNNATC 1 cut(s) 382
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 99, 525
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 239
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 165, 241
Bsp143I GATC 1 cut(s) 377
BspACI CCGC 1 cut(s) 506
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 239, 379, 449
BspPI GGATC 2 cut(s) 372, 385
BsrI ACTGG 2 cut(s) 99, 525
BssECI CCNNGG 3 cut(s) 129, 141, 443
BssMI GATC 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 174, 367
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 210, 500
BstF5I GGATG 3 cut(s) 129, 250, 550
BstKTI GATC 1 cut(s) 380
BstMBI GATC 1 cut(s) 377
BstMWI GCNNNNNNNGC 2 cut(s) 169, 496
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 443
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 3 cut(s) 129, 250, 550
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 237, 238, 279
Csp6I GTAC 1 cut(s) 538
CviAII CATG 2 cut(s) 242, 528
CviJI RGCY 9 cut(s) 78, 108, 138, 148, 163, 172, 204, 239, 271
CviKI_1 RGCY 9 cut(s) 78, 108, 138, 148, 163, 172, 204, 239, 271
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 2 cut(s) 210, 500
DpnI GATC 1 cut(s) 379
DpnII GATC 1 cut(s) 377
Eam1104I CTCTTC 2 cut(s) 174, 367
EarI CTCTTC 2 cut(s) 174, 367
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 165, 241
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 443
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 165, 241
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 245, 531
FaiI YATR 7 cut(s) 9, 198, 243, 358, 440, 471, 529
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 241, 527
Fnu4HI GCNGC 2 cut(s) 269, 507
FokI GGATG 2 cut(s) 136, 237
FriOI GRGCYC 2 cut(s) 165, 241
Fsp4HI GCNGC 2 cut(s) 269, 507
FspBI CTAG 2 cut(s) 105, 464
GluI GCNGC 2 cut(s) 269, 507
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 1 cut(s) 239
Hin1II CATG 2 cut(s) 245, 531
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 1 cut(s) 425
Hpy188I TCNGA 4 cut(s) 142, 211, 518, 554
Hpy188III TCNNGA 5 cut(s) 71, 166, 291, 326, 429
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 4 cut(s) 54, 82, 268, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 496
HpyF3I CTNAG 2 cut(s) 210, 500
Hsp92II CATG 2 cut(s) 245, 531
Kzo9I GATC 1 cut(s) 377
LmnI GCTCC 3 cut(s) 143, 145, 160
LpnPI CCDG 7 cut(s) 6, 112, 257, 353, 430, 457, 506
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 3 cut(s) 224, 533, 541
MaeI CTAG 2 cut(s) 105, 464
MalI GATC 1 cut(s) 379
MboI GATC 1 cut(s) 377
MboII GAAGA 5 cut(s) 191, 314, 317, 384, 404
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 2 cut(s) 165, 241
MluCI AATT 5 cut(s) 26, 83, 174, 312, 398
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 5 cut(s) 136, 175, 205, 368, 375
MroXI GAANNNNTTC 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 2 cut(s) 169, 496
NdeII GATC 1 cut(s) 377
NlaIII CATG 2 cut(s) 245, 531
NlaIV GGNNCC 3 cut(s) 239, 379, 449
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 2 cut(s) 270, 508
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 3 cut(s) 239, 379, 449
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 237, 238, 279
PsuI RGATCY 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SacI GAGCTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 269, 507
Sau3AI GATC 1 cut(s) 377
Sau96I GGNCC 3 cut(s) 237, 238, 279
ScaI AGTACT 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 2 cut(s) 165, 241
SetI ASST 9 cut(s) 80, 115, 140, 150, 165, 174, 273, 449, 465
SfaNI GCATC 3 cut(s) 224, 533, 541
SinI GGWCC 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 5 cut(s) 26, 83, 174, 312, 398
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 483
SspMI CTAG 2 cut(s) 105, 464
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 2 cut(s) 33, 430
TasI AATT 5 cut(s) 26, 83, 174, 312, 398
TatI WGTACW 1 cut(s) 537
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 1 cut(s) 425
TscAI CASTG 1 cut(s) 125
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 239, 391
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 2 cut(s) 105, 464
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.