Prupe.2G050800_v2.0.a1

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000435
Physical Location & Seq
Forward (+)
5867191 .. 5868718
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G050800.1

Sequence Viewer

Length: 654 bp
ATGTCATTCCTTAACGTCCTTTATCATGTCATTTACAAGGTTGGGGAACTCAAGAAACTAGTTGAAGAAGGTAAGGTAAAGTACATTGGCCTATCCGAGGCCTCTGCTTCCACAATAAGAAGGGCACACGCTGTTCATCCAATAACAGCTGTGCAGTTGGAGTGGTCATTGTGGTCAAGAGATGTGGAGGAAGATATAATTCCTACTTGCCGGGAACTTGGCATCGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTTTCATCAGGAGCTAAGTTCTTTGAAAATCTTCCTAATGATGATTTCCGAAAGTATCTACCTAGGTTCCAAGCCGAAAACCTAGAGCATAATAAAACAATATTCGAGCAGGTTCGTGATCTTGCGGCAAGGAAGGGGTGCACCCCATCTCAGCTAGCACTGGCCTGGGTTCATCATCAAGGAAACGATGTGTGTCTGATACCTGGAACCACCAAGATTGAGAATTTTAACCAGAACATTGGTGCTCTCTCTGTGAAACTGACACCAGAAGAACTGGCTGAGCTTGAAACTTTTGCTTCTGTCGATGCCGTTAAAGGTGGCAGATATCAGAATGACTTTAGTACTTGGAAGAACTCTGAAACTCCTCCAGTGTCTTCATGGAAAGCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

218

Amino Acids

24.36

Weight (kDa)

6.32

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 361
AciI CCGC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 2 cut(s) 83, 604
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 65, 287, 548
AhlI ACTAGT 1 cut(s) 58
AjnI CCWGG 2 cut(s) 425, 463
AluBI AGCT 4 cut(s) 149, 275, 415, 544
AluI AGCT 4 cut(s) 149, 275, 415, 544
Alw21I GWGCWC 2 cut(s) 404, 508
Alw44I GTGCAC 1 cut(s) 400
AoxI GGCC 3 cut(s) 88, 99, 423
ApaLI GTGCAC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 484
Asp700I GAANNNNTTC 1 cut(s) 291
AspA2I CCTAGG 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 415
AvrII CCTAGG 1 cut(s) 323
BaeGI GKGCMC 2 cut(s) 127, 404
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 2 cut(s) 404, 508
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 2 cut(s) 427, 465
BcnI CCSGG 1 cut(s) 212
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 5 cut(s) 59, 248, 324, 344, 416
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 1 cut(s) 387
BlnI CCTAGG 1 cut(s) 323
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 3 cut(s) 212, 427, 465
BmiI GGNNCC 2 cut(s) 329, 469
BmrFI CCNGG 3 cut(s) 212, 427, 465
BmsI GCATC 2 cut(s) 231, 556
BmtI GCTAGC 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 627
BpmI CTGGAG 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 96, 323, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 3 cut(s) 426, 540, 629
BseBI CCWGG 2 cut(s) 427, 465
BseDI CCNNGG 3 cut(s) 96, 323, 426
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 425, 531
BseNI ACTGG 3 cut(s) 426, 540, 629
BseRI GAGGAG 1 cut(s) 615
BseSI GKGCMC 2 cut(s) 127, 404
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 3 cut(s) 90, 101, 425
BsiHKAI GWGCWC 2 cut(s) 404, 508
BsiSI CCGG 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 97
BsnI GGCC 3 cut(s) 90, 101, 425
Bsp1286I GDGCHC 3 cut(s) 127, 404, 508
Bsp143I GATC 1 cut(s) 379
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 1 cut(s) 386
BspANI GGCC 3 cut(s) 90, 101, 425
BspCNI CTCAG 2 cut(s) 424, 532
BspLI GGNNCC 2 cut(s) 329, 469
BspMI ACCTGC 1 cut(s) 361
BspOI GCTAGC 1 cut(s) 419
BsrI ACTGG 3 cut(s) 426, 540, 629
BssECI CCNNGG 3 cut(s) 96, 323, 426
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 427, 465
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 276, 411, 540
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 382
BstMBI GATC 1 cut(s) 379
BstNI CCWGG 2 cut(s) 427, 465
BstSCI CCNGG 3 cut(s) 210, 425, 463
BstSLI GKGCMC 2 cut(s) 127, 404
BstV2I GAAGAC 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 500
BsuRI GGCC 3 cut(s) 90, 101, 425
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 419, 636
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 417
Csp6I GTAC 2 cut(s) 82, 603
CspCI CAANNNNNGTGG 4 cut(s) 165, 200, 460, 495
CviAII CATG 3 cut(s) 26, 639, 651
CviQI GTAC 2 cut(s) 82, 603
DdeI CTNAG 3 cut(s) 276, 411, 540
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 101
Eco32I GATATC 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 425, 463
EcoRV GATATC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 3 cut(s) 29, 642, 654
FaiI YATR 6 cut(s) 27, 197, 238, 351, 640, 652
FatI CATG 3 cut(s) 25, 638, 650
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 5 cut(s) 59, 248, 324, 344, 416
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 3 cut(s) 90, 101, 425
HapII CCGG 1 cut(s) 211
Hin1II CATG 3 cut(s) 29, 642, 654
HinfI GANTC 1 cut(s) 258
HpaII CCGG 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 5 cut(s) 97, 311, 459, 591, 619
Hpy188III TCNNGA 4 cut(s) 52, 177, 270, 377
Hpy8I GTNNAC 1 cut(s) 402
HpyAV CCTTC 3 cut(s) 62, 114, 388
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 154, 236, 402
HpyF3I CTNAG 3 cut(s) 276, 411, 540
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 29, 642, 654
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 272
LweI GCATC 2 cut(s) 231, 556
MaeI CTAG 5 cut(s) 59, 248, 324, 344, 416
MaeII ACGT 1 cut(s) 15
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 7 cut(s) 77, 203, 264, 284, 542, 622, 627
MhlI GDGCHC 3 cut(s) 127, 404, 508
MluCI AATT 2 cut(s) 198, 484
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 91, 112, 181, 248, 255, 636
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 12, 489, 573
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 3 cut(s) 212, 427, 465
MvaI CCWGG 2 cut(s) 427, 465
NciI CCSGG 1 cut(s) 212
NdeII GATC 1 cut(s) 379
NheI GCTAGC 1 cut(s) 415
NlaIII CATG 3 cut(s) 29, 642, 654
NlaIV GGNNCC 2 cut(s) 329, 469
PceI AGGCCT 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 258
PkrI GCNGC 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 425, 463
PspGI CCWGG 2 cut(s) 425, 463
PspN4I GGNNCC 2 cut(s) 329, 469
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 83, 604
RsaNI GTAC 2 cut(s) 82, 603
SaqAI TTAA 3 cut(s) 12, 489, 573
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 1 cut(s) 379
ScaI AGTACT 1 cut(s) 604
ScrFI CCNGG 3 cut(s) 212, 427, 465
SduI GDGCHC 3 cut(s) 127, 404, 508
SfaNI GCATC 2 cut(s) 231, 556
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 2 cut(s) 198, 484
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 1 cut(s) 386
SspI AATATT 1 cut(s) 363
SspMI CTAG 5 cut(s) 59, 248, 324, 344, 416
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 210, 425, 463
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 366, 564
TasI AATT 2 cut(s) 198, 484
TatI WGTACW 2 cut(s) 81, 602
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 3 cut(s) 12, 489, 573
Tru9I TTAA 3 cut(s) 12, 489, 573
TscAI CASTG 2 cut(s) 426, 636
TspDTI ATGAA 4 cut(s) 125, 255, 422, 627
TspRI CASTG 2 cut(s) 426, 636
VneI GTGCAC 1 cut(s) 400
XagI CCTNNNNNAGG 1 cut(s) 95
XapI RAATTY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 636
XmaJI CCTAGG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 5 cut(s) 59, 248, 324, 344, 416
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.