RLG00000008372

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000435
Physical Location & Seq
Reverse (-)
29666148 .. 29725647
59500 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008372

Sequence Viewer

Length: 912 bp
ATGGCGAGCATGAGGAGGATGAAGATCGGATCACAAGGCCTGGAGCTCATCCACCACGCCATCGACTCCGGCGTCACCTTCCTCGACACCGCCGACCTGTACGGTCCCCACACCAACGAAATTCTCCTCGGCAAGGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAACTGGCCACCAAATTCGGTATCAGGTTTGCGGACAACAAAATGGAGGTTCAAGGCGACCCGGCATATGTGAGAGCTGCTTGTGAAGGAAGCTTGAAACGCCTTGGTGTTGCTTCTGTTGATCTCTGTTATCAGATTAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGCTCAAGAAGCTAATTGAAGAGGGTAAAATAAAGTACATCGGTCTGTCTGAGGCGTCAGCTTCCACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTATCATCGGGGGCAAATATCATCGAAAATCTTTCCAATGATGATTCTCGAAAGGATATGCCCAGGTTCCAAGCTGAAAACCTTGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCACCCCATCTCAACTAGCACTGGCCTGGGTTCATCACCAAGGAAATGATGTGTGCCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAATATTAAGGCTCTGTCTGTGAAACTGACACCAGAAGAAATGGCCGAGCTTGAATCTTTTGCTTCCGCAGACGCTGTTAAGGGCGACAGATATCAGTCTGGCATCAGCACTTGGATGAACTCTGAAACTCCACCACTGTCTTCATGGAAAGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

304

Amino Acids

33.19

Weight (kDa)

6.26

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 14 - 271 2.8e-57 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10810 AT1G10810 AT1G60680 AT1G60690 AT1G60710 AT1G60730 AT1G60730 AT1G60750
fragaria_vesca FvH4_4g12490
malus_domestica MD04G1026100.v1.1 MD09G1032900.v1.1 MD13G1279900.v1.1
prunus_persica Prupe.1G175500_v2.0.a1 Prupe.1G175600_v2.0.a1 Prupe.1G175700_v2.0.a1 Prupe.1G175800_v2.0.a1 Prupe.2G050800_v2.0.a1
pyrus_communis pycom04g02210 pycom04g02230 pycom111g02620 pycom13g29370
rosa_chinensis RchiOBHm_Chr4g0409691 RchiOBHm_Chr4g0410671 RchiOBHm_Chr4g0410821 RchiOBHm_Chr4g0411011 RchiOBHm_Chr4g0411051 RchiOBHm_Chr4g0411101 RchiOBHm_Chr4g0411151 RchiOBHm_Chr4g0411171 RchiOBHm_Chr4g0411201
rosa_laevigata RLG00000008369 RLG00000008372 RLG00000008374 RLG00000008376 RLG00000008378 RLG00000008381 RLG00000008383 RLG00000008395
rosa_multiflora Rmu_co8497103.1_g000001 Rmu_co8514481.1_g000001 Rmu_sc0000543.1_g000005 Rmu_sc0000543.1_g000006 Rmu_sc0000543.1_g000024 Rmu_sc0000944.1_g000002 Rmu_sc0000944.1_g000011 Rmu_sc0001244.1_g000006 Rmu_sc0001244.1_g000014 Rmu_sc0001244.1_g000017 Rmu_sc0001244.1_g000020 Rmu_sc0003150.1_g000001 Rmu_sc0007879.1_g000001 Rmu_sc0007879.1_g000007 Rmu_sc0009499.1_g000008 Rmu_sc0029727.1_g000001
rosa_roxburghii Rroxscaffold_5G00354230 Rroxscaffold_5G00355560 Rroxscaffold_5G00355580 Rroxscaffold_5G00355600 Rroxscaffold_5G00355650 Rroxscaffold_5G00355710 Rroxscaffold_5G00355730 Rroxscaffold_5G00355760 Rroxscaffold_5G00355800 Rroxscaffold_5G00355840 Rroxscaffold_5G00355850
rosa_rugosa Rorug04G0096400 Rorug04G0105400 Rorug04G0110600 Rorug04G0110700 Rorug05G0412600 Rorug07G0180500
rosa_samantha Rh4AG157500 Rh4BG162500 Rh4BG163400 Rh4CG175300 Rh4CG176100 Rh4CG177100 Rh4CG177200 Rh4CG177400 Rh4CG177500 Rh4CG178000 Rh4CG178100 Rh4CG178300 Rh4DG159900 Rh4DG160200
rosa_wichuraiana Rw4G013600 Rw4G013610 Rw4G013660 Rw4G013690 Rw4G013700 Rw4G013710 Rw4G013720 Rw4G013730 Rw4G013740 Rw4G013750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 71, 317
AciI CCGC 3 cut(s) 90, 197, 819
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 2 cut(s) 171, 795
AcsI RAATTY 3 cut(s) 120, 179, 742
AcyI GRCGYC 2 cut(s) 72, 398
AfaI GTAC 2 cut(s) 101, 380
AfiI CCNNNNNNNGG 2 cut(s) 133, 722
AgsI TTSAA 6 cut(s) 167, 218, 262, 329, 362, 806
AjnI CCWGG 3 cut(s) 39, 581, 683
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 9 cut(s) 46, 242, 258, 346, 355, 404, 454, 593, 802
AluI AGCT 9 cut(s) 46, 242, 258, 346, 355, 404, 454, 593, 802
Alw21I GWGCWC 2 cut(s) 48, 348
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 827
AoxI GGCC 4 cut(s) 37, 171, 681, 795
ApeKI GCWGC 3 cut(s) 242, 451, 644
ApoI RAATTY 3 cut(s) 120, 179, 742
AspS9I GGNCC 2 cut(s) 104, 462
AsuC2I CCSGG 2 cut(s) 227, 723
AsuHPI GGTGA 3 cut(s) 67, 163, 686
AvaII GGWCC 2 cut(s) 104, 462
BaeGI GKGCMC 1 cut(s) 716
BalI TGGCCA 1 cut(s) 173
BanII GRGCYC 3 cut(s) 48, 348, 424
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 2 cut(s) 48, 348
BbvI GCAGC 3 cut(s) 229, 463, 656
BccI CCATC 2 cut(s) 68, 673
BciT130I CCWGG 3 cut(s) 41, 583, 685
BcnI CCSGG 2 cut(s) 227, 723
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 506, 674
BisI GCNGC 3 cut(s) 243, 452, 645
BlsI GCNGC 3 cut(s) 244, 453, 646
Bme1390I CCNGG 5 cut(s) 41, 227, 583, 685, 723
Bme18I GGWCC 2 cut(s) 104, 462
BmgT120I GGNCC 2 cut(s) 104, 462
BmiI GGNNCC 3 cut(s) 106, 587, 727
BmrFI CCNGG 5 cut(s) 41, 227, 583, 685, 723
BmsI GCATC 1 cut(s) 864
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 2 cut(s) 62, 476
BpuEI CTTGAG 2 cut(s) 332, 623
BpuMI CCSGG 2 cut(s) 227, 723
BsaBI GATNNNNATC 2 cut(s) 23, 520
BsaHI GRCGYC 2 cut(s) 72, 398
BsaJI CCNNGG 5 cut(s) 127, 268, 581, 684, 697
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 722
Bse1I ACTGG 2 cut(s) 174, 684
Bse8I GATNNNNATC 2 cut(s) 23, 520
BseBI CCWGG 3 cut(s) 41, 583, 685
BseDI CCNNGG 5 cut(s) 127, 268, 581, 684, 697
BseGI GGATG 4 cut(s) 24, 48, 433, 873
BseJI GATNNNNATC 2 cut(s) 23, 520
BseLI CCNNNNNNNGG 2 cut(s) 133, 722
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 174, 684
BseRI GAGGAG 2 cut(s) 28, 116
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 3 cut(s) 229, 463, 656
BsgI GTGCAG 1 cut(s) 470
BshFI GGCC 4 cut(s) 39, 173, 683, 797
BsiHKAI GWGCWC 2 cut(s) 48, 348
BsiSI CCGG 3 cut(s) 69, 227, 723
BslFI GGGAC 2 cut(s) 90, 305
BslI CCNNNNNNNGG 2 cut(s) 133, 722
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 90, 305
BsnI GGCC 4 cut(s) 39, 173, 683, 797
Bsp1286I GDGCHC 4 cut(s) 48, 348, 424, 716
Bsp143I GATC 4 cut(s) 24, 29, 286, 637
BspACI CCGC 3 cut(s) 90, 197, 819
BspANI GGCC 4 cut(s) 39, 173, 683, 797
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 3 cut(s) 106, 587, 727
BspPI GGATC 1 cut(s) 37
BspQI GCTCTTC 1 cut(s) 412
BsrI ACTGG 2 cut(s) 174, 684
BssECI CCNNGG 5 cut(s) 127, 268, 581, 684, 697
BssMI GATC 4 cut(s) 24, 29, 286, 637
BssNI GRCGYC 2 cut(s) 72, 398
BssT1I CCWWGG 2 cut(s) 268, 697
Bst2UI CCWGG 3 cut(s) 41, 583, 685
Bst4CI ACNGT 4 cut(s) 104, 337, 500, 891
Bst6I CTCTTC 3 cut(s) 357, 412, 505
BstACI GRCGYC 2 cut(s) 72, 398
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 4 cut(s) 24, 48, 433, 873
BstKTI GATC 4 cut(s) 27, 32, 289, 640
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 4 cut(s) 24, 29, 286, 637
BstMWI GCNNNNNNNGC 2 cut(s) 264, 352
BstNI CCWGG 3 cut(s) 41, 583, 685
BstSCI CCNGG 5 cut(s) 39, 225, 581, 683, 721
BstSLI GKGCMC 1 cut(s) 716
BstV1I GCAGC 3 cut(s) 229, 463, 656
BstV2I GAAGAC 1 cut(s) 885
BsuRI GGCC 4 cut(s) 39, 173, 683, 797
BtsCI GGATG 4 cut(s) 24, 48, 433, 873
BtsIMutI CAGTG 2 cut(s) 677, 887
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 827
Cfr13I GGNCC 2 cut(s) 104, 462
CseI GACGC 3 cut(s) 61, 387, 833
Csp6I GTAC 2 cut(s) 100, 379
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviAII CATG 3 cut(s) 10, 425, 897
CviQI GTAC 2 cut(s) 100, 379
DdeI CTNAG 1 cut(s) 393
DpnI GATC 4 cut(s) 26, 31, 288, 639
DpnII GATC 4 cut(s) 24, 29, 286, 637
DrdI GACNNNNNNGTC 2 cut(s) 71, 317
DseDI GACNNNNNNGTC 2 cut(s) 71, 317
EaeI YGGCCR 2 cut(s) 171, 795
Eam1104I CTCTTC 3 cut(s) 357, 412, 505
EarI CTCTTC 3 cut(s) 357, 412, 505
Ecl136II GAGCTC 2 cut(s) 46, 346
Eco130I CCWWGG 2 cut(s) 268, 697
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 3 cut(s) 48, 348, 424
Eco32I GATATC 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 104, 462
Eco53kI GAGCTC 2 cut(s) 46, 346
EcoICRI GAGCTC 2 cut(s) 46, 346
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoRII CCWGG 3 cut(s) 39, 581, 683
EcoRV GATATC 1 cut(s) 845
EcoT14I CCWWGG 2 cut(s) 268, 697
EcoT38I GRGCYC 3 cut(s) 48, 348, 424
ErhI CCWWGG 2 cut(s) 268, 697
FaeI CATG 3 cut(s) 13, 428, 900
FaqI GGGAC 2 cut(s) 90, 305
FatI CATG 3 cut(s) 9, 424, 896
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 243, 452, 645
FokI GGATG 4 cut(s) 31, 35, 420, 880
FriOI GRGCYC 3 cut(s) 48, 348, 424
Fsp4HI GCNGC 3 cut(s) 243, 452, 645
FspBI CTAG 2 cut(s) 506, 674
GluI GCNGC 3 cut(s) 243, 452, 645
GsuI CTGGAG 2 cut(s) 62, 476
HaeIII GGCC 4 cut(s) 39, 173, 683, 797
HapII CCGG 3 cut(s) 69, 227, 723
HgaI GACGC 3 cut(s) 61, 387, 833
Hin1I GRCGYC 2 cut(s) 72, 398
Hin1II CATG 3 cut(s) 13, 428, 900
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 4 cut(s) 65, 516, 563, 806
HpaII CCGG 3 cut(s) 69, 227, 723
HphI GGTGA 3 cut(s) 67, 163, 686
Hpy188I TCNGA 4 cut(s) 29, 300, 394, 877
Hpy188III TCNNGA 2 cut(s) 349, 567
HpyAV CCTTC 3 cut(s) 88, 245, 646
HpyCH4III ACNGT 4 cut(s) 104, 337, 500, 891
HpyCH4V TGCA 4 cut(s) 451, 494, 644, 660
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 352
HpyF3I CTNAG 1 cut(s) 393
Hsp92I GRCGYC 2 cut(s) 72, 398
Hsp92II CATG 3 cut(s) 13, 428, 900
Kzo9I GATC 4 cut(s) 24, 29, 286, 637
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 2 cut(s) 43, 343
Lsp1109I GCAGC 3 cut(s) 229, 463, 656
LweI GCATC 1 cut(s) 864
MaeI CTAG 2 cut(s) 506, 674
MaeIII GTNAC 2 cut(s) 73, 331
MalI GATC 4 cut(s) 26, 31, 288, 639
MboI GATC 4 cut(s) 24, 29, 286, 637
MboII GAAGA 6 cut(s) 34, 374, 429, 522, 800, 885
MhlI GDGCHC 4 cut(s) 48, 348, 424, 716
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 4 cut(s) 120, 179, 357, 742
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MseI TTAA 3 cut(s) 747, 759, 831
MslI CAYNNNNRTG 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 3 cut(s) 69, 227, 723
MspR9I CCNGG 5 cut(s) 41, 227, 583, 685, 723
MvaI CCWGG 3 cut(s) 41, 583, 685
MwoI GCNNNNNNNGC 2 cut(s) 264, 352
NciI CCSGG 2 cut(s) 227, 723
NdeI CATATG 1 cut(s) 232
NdeII GATC 4 cut(s) 24, 29, 286, 637
NlaIII CATG 3 cut(s) 13, 428, 900
NlaIV GGNNCC 3 cut(s) 106, 587, 727
NmeAIII GCCGAG 2 cut(s) 108, 823
NmuCI GTSAC 2 cut(s) 73, 331
PceI AGGCCT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 412
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 90
PfeI GAWTC 3 cut(s) 516, 563, 806
PkrI GCNGC 3 cut(s) 244, 453, 646
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 2 cut(s) 48, 348
Psp6I CCWGG 3 cut(s) 39, 581, 683
PspGI CCWGG 3 cut(s) 39, 581, 683
PspN4I GGNNCC 3 cut(s) 106, 587, 727
PspPI GGNCC 2 cut(s) 104, 462
PstNI CAGNNNCTG 1 cut(s) 827
PvuII CAGCTG 1 cut(s) 454
RsaI GTAC 2 cut(s) 101, 380
RsaNI GTAC 2 cut(s) 100, 379
RseI CAYNNNNRTG 1 cut(s) 866
SacI GAGCTC 2 cut(s) 48, 348
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 3 cut(s) 747, 759, 831
SatI GCNGC 3 cut(s) 243, 452, 645
Sau3AI GATC 4 cut(s) 24, 29, 286, 637
Sau96I GGNCC 2 cut(s) 104, 462
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 5 cut(s) 41, 227, 583, 685, 723
SduI GDGCHC 4 cut(s) 48, 348, 424, 716
SfaNI GCATC 1 cut(s) 864
SinI GGWCC 2 cut(s) 104, 462
SmiMI CAYNNNNRTG 1 cut(s) 866
SmlI CTYRAG 2 cut(s) 347, 602
SmoI CTYRAG 2 cut(s) 347, 602
Sse9I AATT 4 cut(s) 120, 179, 357, 742
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 3 cut(s) 90, 197, 819
SspI AATATT 2 cut(s) 621, 757
SspMI CTAG 2 cut(s) 506, 674
SstI GAGCTC 2 cut(s) 48, 348
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 5 cut(s) 39, 225, 581, 683, 721
StyI CCWWGG 2 cut(s) 268, 697
TaaI ACNGT 4 cut(s) 104, 337, 500, 891
TaqI TCGA 4 cut(s) 63, 84, 543, 568
TaqII GACCGA 1 cut(s) 374
TasI AATT 4 cut(s) 120, 179, 357, 742
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 3 cut(s) 516, 563, 806
Tru1I TTAA 3 cut(s) 747, 759, 831
Tru9I TTAA 3 cut(s) 747, 759, 831
TscAI CASTG 2 cut(s) 684, 894
TseFI GTSAC 2 cut(s) 73, 331
TseI GCWGC 3 cut(s) 242, 451, 644
Tsp45I GTSAC 2 cut(s) 73, 331
TspDTI ATGAA 5 cut(s) 35, 422, 680, 884, 885
TspRI CASTG 2 cut(s) 684, 894
VpaK11BI GGWCC 2 cut(s) 104, 462
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 3 cut(s) 120, 179, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 894
XspI CTAG 2 cut(s) 506, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.