Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011459

Physical Location & Seq

Genomic Coordinates Forward (+)

13554530 .. 13557601

Gene Structure 3072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG133000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTATTATACTCAGAGCTACTATTAACAAAAGGCTTGACCTTTTTTGGGGCCAAAGACTTGACCTTTAACAAAACCCAGAAAAACCCGGCTAGGATTTCGATGCAGAAAGGTGGGTTGGACTCCGATGGCCGGGAATTCAAGACCGCCGAGGAGATGTGGAGGGAGCAGGTCGGAGATGAGAGCAAGAAGACTGATTGGTACCGTGAAGGCGTTGGCTACTGGGAAGGTGTGGAGGCTTCGAATGATGGAGTGTTGGGTGGATTTGGGCATGTGAGTGAGACTGACATAAGGGATAGTGAAGCTTTTCTTAATGGGATTATATCTGAGGTTTTGCCCAATGCTGCTAATGGCCAACGCCACCTTGTTGCTCTTGATTGTGGTTCTGGCATTGGGAGGATCACAAAAAATCTTCTCATAAGATACTTCAATGAGGTTGATCTTCTGGAGCCTGTGTCACATTTTTTAGAAACTGCTCGGGAGAGTTTGGCTCCTGAAAATCAGATGGTCTCTGATATGCACAAAGCCACTAATTTTTTCTGCGTGCCTCTTCAGGAATTCACACCAGAAGCAGGAAGATATGATATTATATGGGTTCAGTGGTGTATTGGCCATCTCACAGATGATGACTTTGTGTCATTCTTTACAAGAGCAAAGGTAGAGCTGTTTTTCATGAATCTTAATGTGAATGTTGGGTTGAAGAAGGCATCAGCTGGAATTGTGAAGTTTGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_PK

Protein Analysis

245

Amino Acids

27.49

Weight (kDa)

5.04

Isoelectric Point (pI)

21.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_PK	PF05891	64 - 222	2.9e-61	AdoMet dependent proline di-methyltransferase
Methyltransf_25	PF13649	125 - 218	3.4e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44450 AT5G44450
fragaria_vesca	FvH4_3g11170 FvH4_3g11170
malus_domestica	MD05G1265300.v1.1 MD10G1243300.v1.1
prunus_persica	Prupe.4G100600_v2.0.a1
pyrus_communis	pycom10g20350
rosa_chinensis	RchiOBHm_Chr5g0018081
rosa_laevigata	RLG00000032338
rosa_multiflora	Rmu_sc0010280.1_g000018
rosa_roxburghii	Rroxscaffold_1G00059540
rosa_rugosa	Rorug05G0040200 Rorug05G0040300 Rorug05G0040300
rosa_samantha	Rh5AG133000 Rh5BG131600 Rh5CG143600 Rh5DG133300
rosa_wichuraiana	Rw5G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	3 cut(s)	130, 352, 610
AcsI	RAATTY	2 cut(s)	137, 557
AcuI	CTGAAG	1 cut(s)	536
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	3 cut(s)	48, 132, 572
AgsI	TTSAA	3 cut(s)	142, 430, 700
AhdI	GACNNNNNGTC	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	19, 305, 664, 713
AluI	AGCT	4 cut(s)	19, 305, 664, 713
Alw26I	GTCTC	2 cut(s)	275, 514
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	4 cut(s)	51, 130, 352, 610
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	137, 557
Asp700I	GAANNNNTTC	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	2 cut(s)	89, 134
AsuII	TTCGAA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	477
BalI	TGGCCA	2 cut(s)	354, 612
BanI	GGYRCC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	4 cut(s)	122, 242, 499, 621
BcnI	CCSGG	2 cut(s)	89, 134
BcoDI	GTCTC	2 cut(s)	275, 514
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	89, 134
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	4 cut(s)	52, 203, 450, 492
BmrFI	CCNGG	2 cut(s)	89, 134
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	93, 716
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpmI	CTGGAG	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	89, 134
BsaI	GGTCTC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 132, 572
Bse1I	ACTGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	48, 132, 572
BseMII	CTCAG	2 cut(s)	27, 318
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	53, 132, 354, 612
BshNI	GGYRCC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	89, 133
BslI	CCNNNNNNNGG	3 cut(s)	48, 132, 572
BsmAI	GTCTC	2 cut(s)	275, 514
BsnI	GGCC	4 cut(s)	53, 132, 354, 612
Bso31I	GGTCTC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	477
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	399, 439
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	4 cut(s)	53, 132, 354, 612
BspCNI	CTCAG	2 cut(s)	26, 319
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	4 cut(s)	52, 203, 450, 492
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	407
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	399, 439
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	2 cut(s)	13, 327
BstKTI	GATC	2 cut(s)	402, 442
BstMAI	GTCTC	2 cut(s)	275, 514
BstMBI	GATC	2 cut(s)	399, 439
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	87, 132
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	53, 132, 354, 612
BtsIMutI	CAGTG	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	545
CciI	TCATGA	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	272, 673
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	13, 327
DpnI	GATC	2 cut(s)	401, 441
DpnII	GATC	2 cut(s)	399, 439
DriI	GACNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	3 cut(s)	130, 352, 610
Eam1104I	CTCTTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	477
EcoRI	GAATTC	2 cut(s)	137, 557
FaeI	CATG	2 cut(s)	275, 676
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	2 cut(s)	271, 672
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	4 cut(s)	53, 132, 354, 612
HapII	CCGG	2 cut(s)	89, 133
Hin1II	CATG	2 cut(s)	275, 676
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	122, 676
HpaII	CCGG	2 cut(s)	89, 133
Hpy188I	TCNGA	6 cut(s)	16, 127, 176, 328, 504, 514
Hpy188III	TCNNGA	7 cut(s)	142, 374, 446, 479, 494, 554, 673
HpyAV	CCTTC	3 cut(s)	203, 221, 697
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	106, 520
HpyF3I	CTNAG	2 cut(s)	13, 327
Hsp92II	CATG	2 cut(s)	275, 676
KpnI	GGTACC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	399, 439
LmnI	GCTCC	3 cut(s)	166, 448, 496
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	93, 716
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	2 cut(s)	401, 441
MboI	GATC	2 cut(s)	399, 439
MboII	GAAGA	6 cut(s)	202, 404, 434, 542, 588, 712
MlsI	TGGCCA	2 cut(s)	354, 612
MluCI	AATT	4 cut(s)	137, 532, 557, 717
MluNI	TGGCCA	2 cut(s)	354, 612
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	99, 154
MnlI	CCTC	7 cut(s)	145, 156, 229, 322, 390, 427, 558
Mox20I	TGGCCA	2 cut(s)	354, 612
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	2 cut(s)	354, 612
MseI	TTAA	4 cut(s)	26, 69, 312, 681
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	2 cut(s)	354, 612
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	2 cut(s)	89, 133
MspR9I	CCNGG	2 cut(s)	89, 134
NciI	CCSGG	2 cut(s)	89, 134
NdeII	GATC	2 cut(s)	399, 439
NlaIII	CATG	2 cut(s)	275, 676
NlaIV	GGNNCC	4 cut(s)	52, 203, 450, 492
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	456
NspI	RCATGY	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	242
PagI	TCATGA	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	676
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	52, 203, 450, 492
PspPI	GGNCC	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	26, 69, 312, 681
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	399, 439
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	89, 134
SfaNI	GCATC	2 cut(s)	93, 716
SfuI	TTCGAA	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	137, 532, 557, 717
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	87, 132
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	101, 242
TasI	AATT	4 cut(s)	137, 532, 557, 717
TfiI	GAWTC	1 cut(s)	676
Tru1I	TTAA	4 cut(s)	26, 69, 312, 681
Tru9I	TTAA	4 cut(s)	26, 69, 312, 681
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	3 cut(s)	661, 689, 723
TspRI	CASTG	1 cut(s)	605
XapI	RAATTY	2 cut(s)	137, 557
XceI	RCATGY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.