PB1 domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16270 AT1G16270 AT1G16270 AT1G79570 AT1G79570 AT1G79570 AT1G79570 AT1G79570 |
| fragaria_vesca | FvH4_3g14670 FvH4_3g14670 FvH4_3g14670 |
| malus_domestica | MD05G1229400.v1.1 MD10G1208700.v1.1 |
| prunus_persica | Prupe.4G132000_v2.0.a1 Prupe.4G132000_v2.0.a1 |
| pyrus_communis | pycom05g21030 pycom10g17740 pycom10g17750 |
| rosa_chinensis | RchiOBHm_Chr5g0024161 |
| rosa_laevigata | RLG00000032775 |
| rosa_multiflora | Rmu_co8405733.1_g000001 Rmu_sc0004033.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00055080 Rroxscaffold_1G00055700 |
| rosa_rugosa | Rorug05G0082100 |
| rosa_samantha | Rh5AG172700 Rh5BG169300 Rh5CG185100 Rh5DG171600 |
| rosa_wichuraiana | Rw5G015580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 597 |
| Acc36I | ACCTGC | 1 cut(s) | 1072 |
| Acc65I | GGTACC | 2 cut(s) | 382, 1572 |
| AccB1I | GGYRCC | 3 cut(s) | 382, 1572, 2819 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 500, 2395, 2522 |
| AciI | CCGC | 5 cut(s) | 725, 2615, 2715, 2941, 3450 |
| AcoI | YGGCCR | 2 cut(s) | 1126, 3224 |
| AcsI | RAATTY | 5 cut(s) | 20, 158, 480, 1620, 2545 |
| AcuI | CTGAAG | 5 cut(s) | 87, 739, 2316, 2642, 3203 |
| AcyI | GRCGYC | 1 cut(s) | 2649 |
| AdeI | CACNNNGTG | 1 cut(s) | 790 |
| AfeI | AGCGCT | 1 cut(s) | 2375 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1549 |
| Alw21I | GWGCWC | 3 cut(s) | 973, 1684, 2191 |
| Alw26I | GTCTC | 6 cut(s) | 899, 1152, 2214, 2914, 3355, 3466 |
| Alw44I | GTGCAC | 1 cut(s) | 2187 |
| Ama87I | CYCGRG | 1 cut(s) | 859 |
| Aor51HI | AGCGCT | 1 cut(s) | 2375 |
| ApaLI | GTGCAC | 1 cut(s) | 2187 |
| ApoI | RAATTY | 5 cut(s) | 20, 158, 480, 1620, 2545 |
| AseI | ATTAAT | 1 cut(s) | 3113 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1320, 1620, 2247 |
| Asp718I | GGTACC | 2 cut(s) | 382, 1572 |
| AspLEI | GCGC | 1 cut(s) | 2376 |
| AspS9I | GGNCC | 9 cut(s) | 84, 311, 722, 838, 1220, 2182, 2437, 2536, 3011 |
| AsuC2I | CCSGG | 1 cut(s) | 1462 |
| AsuHPI | GGTGA | 8 cut(s) | 152, 536, 809, 1712, 1928, 3214, 3254, 3394 |
| AsuII | TTCGAA | 1 cut(s) | 3079 |
| AsuNHI | GCTAGC | 1 cut(s) | 3602 |
| AvaI | CYCGRG | 1 cut(s) | 859 |
| AvaII | GGWCC | 4 cut(s) | 84, 311, 838, 2437 |
| BaeGI | GKGCMC | 1 cut(s) | 2191 |
| BalI | TGGCCA | 1 cut(s) | 1128 |
| BamHI | GGATCC | 3 cut(s) | 368, 1726, 2158 |
| BanI | GGYRCC | 3 cut(s) | 382, 1572, 2819 |
| BanII | GRGCYC | 1 cut(s) | 3535 |
| BauI | CACGAG | 2 cut(s) | 387, 2253 |
| Bbv12I | GWGCWC | 3 cut(s) | 973, 1684, 2191 |
| BceAI | ACGGC | 3 cut(s) | 2169, 3239, 3400 |
| BciVI | GTATCC | 2 cut(s) | 1942, 2076 |
| BclI | TGATCA | 4 cut(s) | 1498, 1756, 2413, 2608 |
| BcnI | CCSGG | 1 cut(s) | 1462 |
| BcoDI | GTCTC | 6 cut(s) | 899, 1152, 2214, 2914, 3355, 3466 |
| BfaI | CTAG | 5 cut(s) | 707, 2792, 3026, 3573, 3603 |
| BfmI | CTRYAG | 4 cut(s) | 677, 1847, 2321, 2928 |
| BfoI | RGCGCY | 1 cut(s) | 2377 |
| BfuAI | ACCTGC | 1 cut(s) | 1072 |
| BfuI | GTATCC | 2 cut(s) | 1942, 2076 |
| BglII | AGATCT | 1 cut(s) | 2788 |
| BlpI | GCTNAGC | 1 cut(s) | 1893 |
| Bme18I | GGWCC | 4 cut(s) | 84, 311, 838, 2437 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1549 |
| BmeT110I | CYCGRG | 1 cut(s) | 859 |
| BmgT120I | GGNCC | 9 cut(s) | 84, 311, 722, 838, 1220, 2182, 2437, 2536, 3011 |
| BmrI | ACTGGG | 3 cut(s) | 2753, 2819, 2907 |
| BmtI | GCTAGC | 1 cut(s) | 3606 |
| BmuI | ACTGGG | 3 cut(s) | 2753, 2819, 2907 |
| BpmI | CTGGAG | 4 cut(s) | 444, 957, 2193, 3303 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2370 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1893 |
| Bpu14I | TTCGAA | 1 cut(s) | 3079 |
| BpuEI | CTTGAG | 4 cut(s) | 1255, 1315, 1598, 2385 |
| BpuMI | CCSGG | 1 cut(s) | 1462 |
| Bsa29I | ATCGAT | 1 cut(s) | 1651 |
| BsaAI | YACGTR | 2 cut(s) | 1283, 3296 |
| BsaBI | GATNNNNATC | 2 cut(s) | 672, 3090 |
| BsaHI | GRCGYC | 1 cut(s) | 2649 |
| BsaI | GGTCTC | 2 cut(s) | 3355, 3466 |
| BsaWI | WCCGGW | 1 cut(s) | 3404 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 758, 788, 2842, 2872 |
| Bse3DI | GCAATG | 3 cut(s) | 1115, 1931, 2043 |
| Bse8I | GATNNNNATC | 2 cut(s) | 672, 3090 |
| BseCI | ATCGAT | 1 cut(s) | 1651 |
| BseJI | GATNNNNATC | 2 cut(s) | 672, 3090 |
| BseMI | GCAATG | 3 cut(s) | 1115, 1931, 2043 |
| BseMII | CTCAG | 6 cut(s) | 50, 523, 795, 1610, 1697, 2564 |
| BseRI | GAGGAG | 5 cut(s) | 158, 650, 1218, 1786, 3425 |
| BseSI | GKGCMC | 1 cut(s) | 2191 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| BsgI | GTGCAG | 4 cut(s) | 767, 1127, 1610, 2234 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1655 |
| BshNI | GGYRCC | 3 cut(s) | 382, 1572, 2819 |
| BshVI | ATCGAT | 1 cut(s) | 1651 |
| BsiEI | CGRYCG | 1 cut(s) | 1655 |
| BsiHKAI | GWGCWC | 3 cut(s) | 973, 1684, 2191 |
| BsiHKCI | CYCGRG | 1 cut(s) | 859 |
| BsiSI | CCGG | 3 cut(s) | 1461, 2069, 3405 |
| BslFI | GGGAC | 4 cut(s) | 70, 1334, 2842, 3034 |
| BsmAI | GTCTC | 6 cut(s) | 899, 1152, 2214, 2914, 3355, 3466 |
| BsmBI | CGTCTC | 1 cut(s) | 1152 |
| BsmFI | GGGAC | 4 cut(s) | 70, 1334, 2842, 3034 |
| BsmI | GAATGC | 2 cut(s) | 70, 1894 |
| Bso31I | GGTCTC | 2 cut(s) | 3355, 3466 |
| BsoBI | CYCGRG | 1 cut(s) | 859 |
| Bsp119I | TTCGAA | 1 cut(s) | 3079 |
| Bsp1286I | GDGCHC | 4 cut(s) | 973, 1684, 2191, 3535 |
| Bsp1407I | TGTACA | 1 cut(s) | 118 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1893 |
| Bsp19I | CCATGG | 2 cut(s) | 3123, 3308 |
| BspACI | CCGC | 5 cut(s) | 725, 2615, 2715, 2941, 3450 |
| BspCNI | CTCAG | 6 cut(s) | 51, 522, 796, 1609, 1696, 2563 |
| BspDI | ATCGAT | 1 cut(s) | 1651 |
| BspHI | TCATGA | 1 cut(s) | 2362 |
| BspMAI | CTGCAG | 3 cut(s) | 681, 1851, 2325 |
| BspMI | ACCTGC | 1 cut(s) | 1072 |
| BspOI | GCTAGC | 1 cut(s) | 3606 |
| BspQI | GCTCTTC | 1 cut(s) | 1045 |
| BspT104I | TTCGAA | 1 cut(s) | 3079 |
| BspT107I | GGYRCC | 3 cut(s) | 382, 1572, 2819 |
| BspTNI | GGTCTC | 2 cut(s) | 3355, 3466 |
| BsrDI | GCAATG | 3 cut(s) | 1115, 1931, 2043 |
| BsrGI | TGTACA | 1 cut(s) | 118 |
| BssNI | GRCGYC | 1 cut(s) | 2649 |
| BssSI | CACGAG | 2 cut(s) | 387, 2253 |
| BssT1I | CCWWGG | 4 cut(s) | 648, 2280, 3123, 3308 |
| Bst2BI | CACGAG | 2 cut(s) | 387, 2253 |
| Bst4CI | ACNGT | 9 cut(s) | 790, 1009, 1362, 1804, 1825, 2833, 2925, 3034, 3494 |
| Bst6I | CTCTTC | 1 cut(s) | 1045 |
| BstACI | GRCGYC | 1 cut(s) | 2649 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 46, 1087 |
| BstAUI | TGTACA | 1 cut(s) | 118 |
| BstBAI | YACGTR | 2 cut(s) | 1283, 3296 |
| BstBI | TTCGAA | 1 cut(s) | 3079 |
| BstC8I | GCNNGC | 6 cut(s) | 68, 1635, 1929, 3107, 3581, 3604 |
| BstDSI | CCRYGG | 2 cut(s) | 3123, 3308 |
| BstH2I | RGCGCY | 1 cut(s) | 2377 |
| BstHHI | GCGC | 1 cut(s) | 2376 |
| BstMAI | GTCTC | 6 cut(s) | 899, 1152, 2214, 2914, 3355, 3466 |
| BstMCI | CGRYCG | 1 cut(s) | 1655 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 46, 730, 1055, 1087, 1588, 1933, 3010, 3128, 3520 |
| BstNSI | RCATGY | 3 cut(s) | 70, 3071, 3430 |
| BstSFI | CTRYAG | 4 cut(s) | 677, 1847, 2321, 2928 |
| BstSLI | GKGCMC | 1 cut(s) | 2191 |
| BstX2I | RGATCY | 8 cut(s) | 368, 673, 1726, 1977, 2158, 2443, 2788, 3214 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2447 |
| BstYI | RGATCY | 8 cut(s) | 368, 673, 1726, 1977, 2158, 2443, 2788, 3214 |
| Bsu15I | ATCGAT | 1 cut(s) | 1651 |
| BsuI | GTATCC | 2 cut(s) | 1942, 2076 |
| BsuTUI | ATCGAT | 1 cut(s) | 1651 |
| BtgI | CCRYGG | 2 cut(s) | 3123, 3308 |
| BtsI | GCAGTG | 1 cut(s) | 3530 |
| BveI | ACCTGC | 1 cut(s) | 1072 |
| Cac8I | GCNNGC | 6 cut(s) | 68, 1635, 1929, 3107, 3581, 3604 |
| CciI | TCATGA | 1 cut(s) | 2362 |
| CfoI | GCGC | 1 cut(s) | 2376 |
| Cfr13I | GGNCC | 9 cut(s) | 84, 311, 722, 838, 1220, 2182, 2437, 2536, 3011 |
| ClaI | ATCGAT | 1 cut(s) | 1651 |
| CseI | GACGC | 2 cut(s) | 1169, 2657 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 189, 224, 1926, 1961, 2964, 2999 |
| DraI | TTTAAA | 1 cut(s) | 2733 |
| DraIII | CACNNNGTG | 1 cut(s) | 790 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1549 |
| EaeI | YGGCCR | 2 cut(s) | 1126, 3224 |
| Eam1104I | CTCTTC | 1 cut(s) | 1045 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1549 |
| EarI | CTCTTC | 1 cut(s) | 1045 |
| Eco130I | CCWWGG | 4 cut(s) | 648, 2280, 3123, 3308 |
| Eco24I | GRGCYC | 1 cut(s) | 3535 |
| Eco31I | GGTCTC | 2 cut(s) | 3355, 3466 |
| Eco32I | GATATC | 4 cut(s) | 1714, 2236, 2272, 2758 |
| Eco47I | GGWCC | 4 cut(s) | 84, 311, 838, 2437 |
| Eco47III | AGCGCT | 1 cut(s) | 2375 |
| Eco57I | CTGAAG | 5 cut(s) | 87, 739, 2316, 2642, 3203 |
| Eco88I | CYCGRG | 1 cut(s) | 859 |
| EcoO109I | RGGNCCY | 1 cut(s) | 84 |
| EcoRI | GAATTC | 3 cut(s) | 20, 1620, 2545 |
| EcoRV | GATATC | 4 cut(s) | 1714, 2236, 2272, 2758 |
| EcoT14I | CCWWGG | 4 cut(s) | 648, 2280, 3123, 3308 |
| EcoT22I | ATGCAT | 3 cut(s) | 72, 1092, 1525 |
| EcoT38I | GRGCYC | 1 cut(s) | 3535 |
| ErhI | CCWWGG | 4 cut(s) | 648, 2280, 3123, 3308 |
| Esp3I | CGTCTC | 1 cut(s) | 1152 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2876, 2908 |
| FaqI | GGGAC | 4 cut(s) | 70, 1334, 2842, 3034 |
| FauI | CCCGC | 1 cut(s) | 2934 |
| FauNDI | CATATG | 2 cut(s) | 1051, 2541 |
| FbaI | TGATCA | 4 cut(s) | 1498, 1756, 2413, 2608 |
| FriOI | GRGCYC | 1 cut(s) | 3535 |
| FspBI | CTAG | 5 cut(s) | 707, 2792, 3026, 3573, 3603 |
| GlaI | GCGC | 1 cut(s) | 2375 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| GsuI | CTGGAG | 4 cut(s) | 444, 957, 2193, 3303 |
| HaeII | RGCGCY | 1 cut(s) | 2377 |
| HapII | CCGG | 3 cut(s) | 1461, 2069, 3405 |
| HgaI | GACGC | 2 cut(s) | 1169, 2657 |
| HhaI | GCGC | 1 cut(s) | 2376 |
| Hin1I | GRCGYC | 1 cut(s) | 2649 |
| Hin6I | GCGC | 1 cut(s) | 2374 |
| HinP1I | GCGC | 1 cut(s) | 2374 |
| HindIII | AAGCTT | 3 cut(s) | 731, 1056, 1895 |
| HpaII | CCGG | 3 cut(s) | 1461, 2069, 3405 |
| HphI | GGTGA | 8 cut(s) | 152, 536, 809, 1712, 1928, 3214, 3254, 3394 |
| Hpy99I | CGWCG | 1 cut(s) | 3105 |
| HpyCH4III | ACNGT | 9 cut(s) | 790, 1009, 1362, 1804, 1825, 2833, 2925, 3034, 3494 |
| HpyCH4IV | ACGT | 2 cut(s) | 1282, 3295 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 46, 730, 1055, 1087, 1588, 1933, 3010, 3128, 3520 |
| HpySE526I | ACGT | 2 cut(s) | 1282, 3295 |
| Hsp92I | GRCGYC | 1 cut(s) | 2649 |
| HspAI | GCGC | 1 cut(s) | 2374 |
| KpnI | GGTACC | 2 cut(s) | 386, 1576 |
| Ksp22I | TGATCA | 4 cut(s) | 1498, 1756, 2413, 2608 |
| LguI | GCTCTTC | 1 cut(s) | 1045 |
| MaeI | CTAG | 5 cut(s) | 707, 2792, 3026, 3573, 3603 |
| MaeII | ACGT | 2 cut(s) | 1282, 3295 |
| MaeIII | GTNAC | 7 cut(s) | 254, 797, 1307, 3034, 3188, 3488, 3623 |
| MfeI | CAATTG | 3 cut(s) | 602, 1212, 1452 |
| MflI | RGATCY | 8 cut(s) | 368, 673, 1726, 1977, 2158, 2443, 2788, 3214 |
| MhlI | GDGCHC | 4 cut(s) | 973, 1684, 2191, 3535 |
| MlsI | TGGCCA | 1 cut(s) | 1128 |
| MluNI | TGGCCA | 1 cut(s) | 1128 |
| MlyI | GAGTC | 2 cut(s) | 794, 947 |
| MmeI | TCCRAC | 1 cut(s) | 499 |
| Mox20I | TGGCCA | 1 cut(s) | 1128 |
| Mph1103I | ATGCAT | 3 cut(s) | 72, 1092, 1525 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1320, 1620, 2247 |
| MscI | TGGCCA | 1 cut(s) | 1128 |
| MslI | CAYNNNNRTG | 7 cut(s) | 201, 411, 900, 1758, 2976, 3307, 3637 |
| Msp20I | TGGCCA | 1 cut(s) | 1128 |
| MspA1I | CMGCKG | 1 cut(s) | 2717 |
| MspI | CCGG | 3 cut(s) | 1461, 2069, 3405 |
| MunI | CAATTG | 3 cut(s) | 602, 1212, 1452 |
| Mva1269I | GAATGC | 2 cut(s) | 70, 1894 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 46, 730, 1055, 1087, 1588, 1933, 3010, 3128, 3520 |
| NciI | CCSGG | 1 cut(s) | 1462 |
| NcoI | CCATGG | 2 cut(s) | 3123, 3308 |
| NdeI | CATATG | 2 cut(s) | 1051, 2541 |
| NheI | GCTAGC | 1 cut(s) | 3602 |
| NmeAIII | GCCGAG | 2 cut(s) | 863, 2167 |
| NmuCI | GTSAC | 5 cut(s) | 254, 797, 1307, 3188, 3623 |
| NsiI | ATGCAT | 3 cut(s) | 72, 1092, 1525 |
| NspI | RCATGY | 3 cut(s) | 70, 3071, 3430 |
| NspV | TTCGAA | 1 cut(s) | 3079 |
| PaeI | GCATGC | 1 cut(s) | 70 |
| PaeR7I | CTCGAG | 1 cut(s) | 859 |
| PagI | TCATGA | 1 cut(s) | 2362 |
| PasI | CCCWGGG | 1 cut(s) | 1626 |
| PciSI | GCTCTTC | 1 cut(s) | 1045 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 538, 2251, 3106 |
| PctI | GAATGC | 2 cut(s) | 70, 1894 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1320, 1620, 2247 |
| PfeI | GAWTC | 9 cut(s) | 249, 1195, 1457, 1602, 1648, 1670, 1871, 2678, 3397 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 500, 2395, 2522 |
| PfoI | TCCNGGA | 2 cut(s) | 628, 1460 |
| Ple19I | CGATCG | 1 cut(s) | 1655 |
| PleI | GAGTC | 2 cut(s) | 794, 947 |
| PpsI | GAGTC | 2 cut(s) | 794, 947 |
| Ppu21I | YACGTR | 2 cut(s) | 1283, 3296 |
| PpuMI | RGGWCCY | 1 cut(s) | 84 |
| PshBI | ATTAAT | 1 cut(s) | 3113 |
| PsiI | TTATAA | 1 cut(s) | 597 |
| Psp5II | RGGWCCY | 1 cut(s) | 84 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspPI | GGNCC | 9 cut(s) | 84, 311, 722, 838, 1220, 2182, 2437, 2536, 3011 |
| PspPPI | RGGWCCY | 1 cut(s) | 84 |
| PspXI | VCTCGAGB | 1 cut(s) | 859 |
| PstI | CTGCAG | 3 cut(s) | 681, 1851, 2325 |
| PsuI | RGATCY | 8 cut(s) | 368, 673, 1726, 1977, 2158, 2443, 2788, 3214 |
| PvuI | CGATCG | 1 cut(s) | 1655 |
| RseI | CAYNNNNRTG | 7 cut(s) | 201, 411, 900, 1758, 2976, 3307, 3637 |
| SapI | GCTCTTC | 1 cut(s) | 1045 |
| Sau96I | GGNCC | 9 cut(s) | 84, 311, 722, 838, 1220, 2182, 2437, 2536, 3011 |
| SchI | GAGTC | 2 cut(s) | 794, 947 |
| SduI | GDGCHC | 4 cut(s) | 973, 1684, 2191, 3535 |
| SfcI | CTRYAG | 4 cut(s) | 677, 1847, 2321, 2928 |
| Sfr274I | CTCGAG | 1 cut(s) | 859 |
| SfuI | TTCGAA | 1 cut(s) | 3079 |
| SinI | GGWCC | 4 cut(s) | 84, 311, 838, 2437 |
| SlaI | CTCGAG | 1 cut(s) | 859 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 201, 411, 900, 1758, 2976, 3307, 3637 |
| SmlI | CTYRAG | 5 cut(s) | 859, 1234, 1330, 1577, 2400 |
| SmoI | CTYRAG | 5 cut(s) | 859, 1234, 1330, 1577, 2400 |
| SphI | GCATGC | 1 cut(s) | 70 |
| SsiI | CCGC | 5 cut(s) | 725, 2615, 2715, 2941, 3450 |
| SspI | AATATT | 3 cut(s) | 922, 3149, 3166 |
| SspMI | CTAG | 5 cut(s) | 707, 2792, 3026, 3573, 3603 |
| StyI | CCWWGG | 4 cut(s) | 648, 2280, 3123, 3308 |
| TaaI | ACNGT | 9 cut(s) | 790, 1009, 1362, 1804, 1825, 2833, 2925, 3034, 3494 |
| TaiI | ACGT | 2 cut(s) | 1285, 3298 |
| TaqI | TCGA | 5 cut(s) | 172, 860, 1651, 2238, 3079 |
| TatI | WGTACW | 2 cut(s) | 118, 1854 |
| TauI | GCSGC | 1 cut(s) | 727 |
| TfiI | GAWTC | 9 cut(s) | 249, 1195, 1457, 1602, 1648, 1670, 1871, 2678, 3397 |
| TseFI | GTSAC | 5 cut(s) | 254, 797, 1307, 3188, 3623 |
| Tsp45I | GTSAC | 5 cut(s) | 254, 797, 1307, 3188, 3623 |
| TspGWI | ACGGA | 5 cut(s) | 273, 361, 530, 1848, 3348 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 500, 2395, 2522 |
| VneI | GTGCAC | 1 cut(s) | 2187 |
| VpaK11BI | GGWCC | 4 cut(s) | 84, 311, 838, 2437 |
| VspI | ATTAAT | 1 cut(s) | 3113 |
| XapI | RAATTY | 5 cut(s) | 20, 158, 480, 1620, 2545 |
| XbaI | TCTAGA | 1 cut(s) | 2791 |
| XceI | RCATGY | 3 cut(s) | 70, 3071, 3430 |
| XhoI | CTCGAG | 1 cut(s) | 859 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1320, 1620, 2247 |
| XspI | CTAG | 5 cut(s) | 707, 2792, 3026, 3573, 3603 |
| Zsp2I | ATGCAT | 3 cut(s) | 72, 1092, 1525 |