Rh7CG399400

Sterol 3-beta-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014580
Physical Location & Seq
Reverse (-)
51012869 .. 51020832
7964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG399400.1

Sequence Viewer

Length: 1425 bp
ATGGAGGTTGAGACGGAGAGGACGAAACCCGTTGCTGTATTCATGGCTTTCGGTACCAAAGGCGATGTCTATCCAATTGCTGCCATTGCGGCGGCCTTTGCTTCCGACCAGAGACAGTACCAAGTTGTTCTTATCACACATTCAGCTCACGAGAGCTTACGTTGTCACTTGGCTGAGAAGCATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATCAGAAACATGATACTACAGGCTCTGTAGAGTTGCCTCTTTCACTGCAGAAAAAGTTGTTTTCTGGAGAACATAGAAAAGAATGTCTTTCGGTAGTTGAAACGATATTTGGATCAGGCCCAAGCATGGATGGTGATTTCATTGTGATAAATTTCTTTGCTCTGGAAGGCTGGAGTCTTGCGGAGCTTTTCCGTGTCCGCTGCATGGTTGCTGCTCCTTATGTTGTTCCGTACAGTGCACCTTCATCATTTGAGCGCCAGTTTAAAAAGGAATATCAACACTTGTATAGATACCTGCATGAACCTAACCTCAGGAAGGTTGGTTGGAAAGACGTGATCCACTGGATGTGGCCTCTTTTCACTGAACACTGGGGATCCTGGAGATGTGACCATTTGAATCTGAGTGCTTTCCCTTTTACAGATCCAGTAACGGGTCTCCCCACTTGGCATGATAGGCCACTGTCTCCCCGACTTTTGTATGGTTTTAGCAAAGAAGTTGTTGAGTGCCCAGATTACTGGCCATCGAGCATTCGGGGGATCTGTACACAAATGCTGAAATACTCCTACGCCTATGCCACCTGTTTTTATTGGCCTGAATTCTATTGCATGGGATTTTTGAAGAATCCTCAAGCATTTCTTCGTATTCTTGAATCTGTCCTCAAGATAACAACTTATCGTTTTATCCTTTTTACTGCTGGCTACAAGCCTTTAGATGCAGCAATCCGAGCTATTGCTGCTGATTCATCATCGCACATGACCCACAAACAGATTAATGACGATTGCGTTTCTCTCTTCCACGAACGATTGTTCGGCTTTTCTGGTTCTATACCATACATGTGGTTGTTTTCTGGATGTGCGGCTGCAATTCATCATGGGGGAAGTGGAACTACTGCTGCAGCACTACTTGCAGGAATCCCACAGGTACTATGTCCATTTATGCTAGACCAGTTTTATTGGGCAGAAAGAATGTTTTGGCTTGGAGTGGCATCAGAACCGTTGAAAAGGAGCCACTTGCTTCCTGAAGAAAGTGATGACGAAAGTATCGAAGAAGCAGCCAAGATGCTATCAAGAGTCATACATGATACATTATCTCCTGAAATTAGAGAACGCGCTGTAGAAATTTCTGAGAGAATATCTCTTGAGGACGGAGTCTCAAATGCTGTTAGGTATATCAAGGAAGAGATTGGTTGTTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

474

Amino Acids

53.91

Weight (kDa)

6.13

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EryCIII-like_C PF06722 350 - 406 2.4e-12 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24750
fragaria_vesca FvH4_5g30191 FvH4_5g30191
malus_domestica MD08G1224800.v1.1
prunus_persica Prupe.1G562100_v2.0.a1
pyrus_communis pycom08g19590
rosa_chinensis RchiOBHm_Chr7g0224451
rosa_laevigata RLG00000001894
rosa_multiflora Rmu_sc0003894.1_g000001
rosa_roxburghii Rroxscaffold_3G00234750
rosa_rugosa Rorug07G0223300 Rorug07G0223400
rosa_samantha Rh7AG379900 Rh7BG359500 Rh7CG399400 Rh7DG369100
rosa_wichuraiana Rw7G031180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 528
Acc65I GGTACC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 53
AccII CGCG 1 cut(s) 1335
AciI CCGC 5 cut(s) 89, 92, 407, 424, 1082
AclWI GGATC 6 cut(s) 346, 556, 594, 607, 641, 770
AcoI YGGCCR 1 cut(s) 743
AcsI RAATTY 3 cut(s) 376, 821, 1344
AcuI CTGAAG 1 cut(s) 1266
AfaI GTAC 5 cut(s) 55, 119, 458, 769, 1149
AfiI CCNNNNNNNGG 4 cut(s) 352, 430, 541, 656
AflIII ACRYGT 1 cut(s) 1059
AgsI TTSAA 6 cut(s) 326, 622, 844, 875, 1225, 1419
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 1 cut(s) 602
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 5 cut(s) 146, 156, 412, 953, 1422
AluI AGCT 5 cut(s) 146, 156, 412, 953, 1422
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 5 cut(s) 5, 106, 665, 693, 1381
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 6 cut(s) 346, 556, 594, 607, 641, 770
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 6 cut(s) 93, 343, 575, 680, 743, 815
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 9 cut(s) 80, 426, 437, 941, 959, 1085, 1118, 1121, 1277
ApoI RAATTY 3 cut(s) 376, 821, 1344
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AseI ATTAAT 1 cut(s) 996
Asp718I GGTACC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 483, 1337
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 198, 371
AxyI CCTNAGG 1 cut(s) 536
BaeGI GKGCMC 2 cut(s) 466, 734
BaeI ACNNNNGTAYC 2 cut(s) 1249, 1282
BalI TGGCCA 1 cut(s) 745
BamHI GGATCC 1 cut(s) 599
BanI GGYRCC 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 1096, 1128
BauI CACGAG 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 9 cut(s) 67, 413, 424, 946, 953, 1072, 1105, 1133, 1289
BccI CCATC 3 cut(s) 234, 350, 754
BciT130I CCWGG 1 cut(s) 604
BcoDI GTCTC 5 cut(s) 5, 106, 665, 693, 1381
BfaI CTAG 1 cut(s) 1166
BfmI CTRYAG 5 cut(s) 243, 252, 272, 1119, 1338
BfoI RGCGCY 1 cut(s) 484
BfuAI ACCTGC 1 cut(s) 528
BglI GCCNNNNNGGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 604
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 55, 601, 1232
BmrFI CCNGG 1 cut(s) 604
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 3 cut(s) 928, 1220, 1275
BmuI ACTGGG 1 cut(s) 604
BplI GAGNNNNNCTC 2 cut(s) 1345, 1377
BpmI CTGGAG 3 cut(s) 312, 418, 625
BpuEI CTTGAG 3 cut(s) 837, 869, 1385
BsaBI GATNNNNATC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 665
BsaXI ACNNNNNCTCC 2 cut(s) 1300, 1330
Bsc4I CCNNNNNNNGG 4 cut(s) 352, 430, 541, 656
Bse1I ACTGG 6 cut(s) 484, 572, 599, 650, 746, 1171
Bse21I CCTNAGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 604
BseGI GGATG 3 cut(s) 361, 576, 1082
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 352, 430, 541, 656
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 4 cut(s) 165, 550, 617, 1341
BseNI ACTGG 6 cut(s) 484, 572, 599, 650, 746, 1171
BseSI GKGCMC 2 cut(s) 466, 734
BseXI GCAGC 9 cut(s) 67, 413, 424, 946, 953, 1072, 1105, 1133, 1289
Bsh1236I CGCG 1 cut(s) 1335
BshFI GGCC 6 cut(s) 95, 345, 577, 682, 745, 817
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 466
BslI CCNNNNNNNGG 4 cut(s) 352, 430, 541, 656
BsmAI GTCTC 5 cut(s) 5, 106, 665, 693, 1381
BsmBI CGTCTC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 6 cut(s) 95, 345, 577, 682, 745, 817
Bso31I GGTCTC 1 cut(s) 665
Bsp1286I GDGCHC 2 cut(s) 466, 734
Bsp1407I TGTACA 1 cut(s) 767
Bsp143I GATC 5 cut(s) 338, 561, 599, 646, 762
BspACI CCGC 5 cut(s) 89, 92, 407, 424, 1082
BspANI GGCC 6 cut(s) 95, 345, 577, 682, 745, 817
BspCNI CTCAG 4 cut(s) 166, 549, 618, 1342
BspFNI CGCG 1 cut(s) 1335
BspLI GGNNCC 3 cut(s) 55, 601, 1232
BspMAI CTGCAG 2 cut(s) 276, 1123
BspMI ACCTGC 1 cut(s) 528
BspPI GGATC 6 cut(s) 346, 556, 594, 607, 641, 770
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 767
BsrI ACTGG 6 cut(s) 484, 572, 599, 650, 746, 1171
BssMI GATC 5 cut(s) 338, 561, 599, 646, 762
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 4 cut(s) 117, 461, 687, 1221
Bst6I CTCTTC 2 cut(s) 1022, 1398
BstAPI GCANNNNNTGC 1 cut(s) 1130
BstAUI TGTACA 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 922
BstDEI CTNAG 4 cut(s) 174, 536, 626, 1350
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 3 cut(s) 361, 576, 1082
BstFNI CGCG 1 cut(s) 1335
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 2 cut(s) 483, 1337
BstKTI GATC 5 cut(s) 341, 564, 602, 649, 765
BstMAI GTCTC 5 cut(s) 5, 106, 665, 693, 1381
BstMBI GATC 5 cut(s) 338, 561, 599, 646, 762
BstMWI GCNNNNNNNGC 7 cut(s) 86, 89, 98, 679, 950, 959, 1130
BstNI CCWGG 1 cut(s) 604
BstNSI RCATGY 2 cut(s) 185, 1063
BstSCI CCNGG 1 cut(s) 602
BstSFI CTRYAG 5 cut(s) 243, 252, 272, 1119, 1338
BstSLI GKGCMC 2 cut(s) 466, 734
BstUI CGCG 1 cut(s) 1335
BstV1I GCAGC 9 cut(s) 67, 413, 424, 946, 953, 1072, 1105, 1133, 1289
BstX2I RGATCY 3 cut(s) 599, 646, 762
BstXI CCANNNNNNTGG 2 cut(s) 741, 1062
BstYI RGATCY 3 cut(s) 599, 646, 762
Bsu36I CCTNAGG 1 cut(s) 536
BsuRI GGCC 6 cut(s) 95, 345, 577, 682, 745, 817
BtgZI GCGATG 2 cut(s) 78, 957
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 3 cut(s) 361, 576, 1082
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 6 cut(s) 269, 466, 565, 585, 592, 683
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 1 cut(s) 922
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 2 cut(s) 483, 1337
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 5 cut(s) 54, 118, 457, 768, 1148
CviQI GTAC 5 cut(s) 54, 118, 457, 768, 1148
DdeI CTNAG 4 cut(s) 174, 536, 626, 1350
DpnI GATC 5 cut(s) 340, 563, 601, 648, 764
DpnII GATC 5 cut(s) 338, 561, 599, 646, 762
DraI TTTAAA 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 743
Eam1104I CTCTTC 2 cut(s) 1022, 1398
EarI CTCTTC 2 cut(s) 1022, 1398
Eco31I GGTCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 1266
Eco81I CCTNAGG 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 602
Esp3I CGTCTC 1 cut(s) 5
FalI AAGNNNNNCTT 6 cut(s) 114, 146, 297, 329, 846, 878
FokI GGATG 3 cut(s) 368, 583, 1089
FspBI CTAG 1 cut(s) 1166
GlaI GCGC 2 cut(s) 482, 1336
GsuI CTGGAG 3 cut(s) 312, 418, 625
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 6 cut(s) 95, 345, 577, 682, 745, 817
HhaI GCGC 2 cut(s) 483, 1337
Hin6I GCGC 2 cut(s) 481, 1335
HinP1I GCGC 2 cut(s) 481, 1335
HinfI GANTC 8 cut(s) 400, 622, 847, 875, 965, 1137, 1296, 1374
HphI GGTGA 2 cut(s) 198, 371
Hpy166II GTNNAC 2 cut(s) 464, 770
Hpy188I TCNGA 6 cut(s) 106, 231, 627, 950, 1216, 1351
Hpy8I GTNNAC 2 cut(s) 464, 770
HpyAV CCTTC 3 cut(s) 386, 477, 535
HpyCH4III ACNGT 4 cut(s) 117, 461, 687, 1221
HpyCH4IV ACGT 2 cut(s) 160, 558
HpyCH4V TGCA 9 cut(s) 274, 429, 464, 523, 831, 941, 1088, 1121, 1133
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 89, 98, 679, 950, 959, 1130
HpyF3I CTNAG 4 cut(s) 174, 536, 626, 1350
HpySE526I ACGT 2 cut(s) 160, 558
HspAI GCGC 2 cut(s) 481, 1335
KpnI GGTACC 1 cut(s) 57
Kzo9I GATC 5 cut(s) 338, 561, 599, 646, 762
LmnI GCTCC 3 cut(s) 409, 445, 1230
Lsp1109I GCAGC 9 cut(s) 67, 413, 424, 946, 953, 1072, 1105, 1133, 1289
LweI GCATC 3 cut(s) 928, 1220, 1275
MaeI CTAG 1 cut(s) 1166
MaeII ACGT 2 cut(s) 160, 558
MaeIII GTNAC 3 cut(s) 164, 611, 652
MalI GATC 5 cut(s) 340, 563, 601, 648, 764
MboI GATC 5 cut(s) 338, 561, 599, 646, 762
MboII GAAGA 7 cut(s) 185, 854, 856, 1009, 1259, 1283, 1415
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 3 cut(s) 599, 646, 762
MhlI GDGCHC 2 cut(s) 466, 734
MlsI TGGCCA 1 cut(s) 745
MluCI AATT 7 cut(s) 75, 198, 376, 821, 1089, 1323, 1344
MluNI TGGCCA 1 cut(s) 745
MlyI GAGTC 3 cut(s) 409, 1305, 1383
MmeI TCCRAC 2 cut(s) 129, 530
MnlI CCTC 7 cut(s) 12, 273, 545, 588, 861, 893, 1360
Mox20I TGGCCA 1 cut(s) 745
MscI TGGCCA 1 cut(s) 745
MseI TTAA 2 cut(s) 489, 996
MslI CAYNNNNRTG 1 cut(s) 1060
Msp20I TGGCCA 1 cut(s) 745
MspA1I CMGCKG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 604
MunI CAATTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 1 cut(s) 604
MvnI CGCG 1 cut(s) 1335
MwoI GCNNNNNNNGC 7 cut(s) 86, 89, 98, 679, 950, 959, 1130
NdeII GATC 5 cut(s) 338, 561, 599, 646, 762
NlaIV GGNNCC 3 cut(s) 55, 601, 1232
NmuCI GTSAC 2 cut(s) 164, 611
NspI RCATGY 2 cut(s) 185, 1063
PciI ACATGT 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 1266
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 5 cut(s) 622, 847, 875, 965, 1137
PflFI GACNNNGTC 1 cut(s) 1373
PfoI TCCNGGA 1 cut(s) 602
PleI GAGTC 3 cut(s) 408, 1304, 1382
PpsI GAGTC 3 cut(s) 408, 1304, 1382
PscI ACATGT 1 cut(s) 1059
PshBI ATTAAT 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 602
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 55, 601, 1232
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 2 cut(s) 276, 1123
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 3 cut(s) 599, 646, 762
PsyI GACNNNGTC 1 cut(s) 1373
RsaI GTAC 5 cut(s) 55, 119, 458, 769, 1149
RsaNI GTAC 5 cut(s) 54, 118, 457, 768, 1148
RseI CAYNNNNRTG 1 cut(s) 1060
SaqAI TTAA 2 cut(s) 489, 996
Sau3AI GATC 5 cut(s) 338, 561, 599, 646, 762
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 3 cut(s) 409, 1305, 1383
ScrFI CCNGG 1 cut(s) 604
SduI GDGCHC 2 cut(s) 466, 734
SfaNI GCATC 3 cut(s) 928, 1220, 1275
SfcI CTRYAG 5 cut(s) 243, 252, 272, 1119, 1338
SmiMI CAYNNNNRTG 1 cut(s) 1060
SmlI CTYRAG 3 cut(s) 852, 884, 1364
SmoI CTYRAG 3 cut(s) 852, 884, 1364
Sse9I AATT 7 cut(s) 75, 198, 376, 821, 1089, 1323, 1344
SsiI CCGC 5 cut(s) 89, 92, 407, 424, 1082
SspMI CTAG 1 cut(s) 1166
StyD4I CCNGG 1 cut(s) 602
TaaI ACNGT 4 cut(s) 117, 461, 687, 1221
TaiI ACGT 2 cut(s) 163, 561
TaqI TCGA 2 cut(s) 749, 1269
TasI AATT 7 cut(s) 75, 198, 376, 821, 1089, 1323, 1344
TatI WGTACW 1 cut(s) 767
TauI GCSGC 3 cut(s) 92, 95, 1085
TfiI GAWTC 5 cut(s) 622, 847, 875, 965, 1137
Tru1I TTAA 2 cut(s) 489, 996
Tru9I TTAA 2 cut(s) 489, 996
TscAI CASTG 6 cut(s) 276, 466, 572, 592, 599, 690
TseFI GTSAC 2 cut(s) 164, 611
TseI GCWGC 9 cut(s) 80, 426, 437, 941, 959, 1085, 1118, 1121, 1277
Tsp45I GTSAC 2 cut(s) 164, 611
TspDTI ATGAA 7 cut(s) 31, 192, 355, 459, 540, 957, 1082
TspGWI ACGGA 4 cut(s) 29, 407, 444, 1386
TspRI CASTG 6 cut(s) 276, 466, 572, 592, 599, 690
Tth111I GACNNNGTC 1 cut(s) 1373
VneI GTGCAC 1 cut(s) 462
VspI ATTAAT 1 cut(s) 996
XagI CCTNNNNNAGG 1 cut(s) 539
XapI RAATTY 3 cut(s) 376, 821, 1344
XceI RCATGY 2 cut(s) 185, 1063
XspI CTAG 1 cut(s) 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.