Rw3G008610

B3 domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001663
Physical Location & Seq
Forward (+)
7971302 .. 7976715
5414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008610.1

Sequence Viewer

Length: 2724 bp
ATGGATCCGAGTGCTTGTATGAACGCGTATTGCGGGAGCTCGAGCTCGATCGAATGGAAAAAAGGCTGGGCTTTGCGATCTGGTAGATTCGCCAATCTGTGTCACAAGTGCGGGACTGCATATGAGGAATCACTTTTTTGTGATGTTTTCCATTCAAAAGAATCCGGTTGGAGGGAGTGCGCTCAATGTGGAAAGCATCTTCATTGTGGGTGCATTGCTTCCAGGAGTCTGCTTGATTTCCTTGACAGTGGTGGTGTCAAGTGTAAACACTGCACGAAAAATTCAGAATCTCACCCTATTGCTAGTGACGAAAAGCCTGATGGACCTGGCATATCCAAAATCAGTGAGCTGAAATTAGCTCCTTCAGACAATCAATTGGATAGTAACAATGTCGATAAAGTGAAGCTTATGCAGATGGAAAATAATAAAGAGTGTAATGGGCTCAGGAACTTGCTTCAATCTCAGAACAATGAAACAGTTGGGTTATTGCAGAAAATGAAACAGGATGATGTTCCAGCTCCTGTGGTTGAGATTGGAGGCACAAGTCTGTCAGTTTTTAATCAGACATCCAATGTATCATCTGAAAGTTCCAAACCAGAAATTTATAAAGCAAACTTGGGGATAAATGATATATATGAATCCCTTCCGCACACAAATTTGAGTATGAGCCTAGGTGCACCTGCAGGATATGCAAATCCTTTTCCTGGTATCGGTGTTGATGAACATGCTAGGACATCCTCTCTGTTCTTACAGGGAGCTAGGTCTCGTCATCTTTTGCCAAAGCCTCCAAAGTTGGCCCTTGCCACAGGTTTGGAGGAAAATTCTACAATGGCTTCACAGGCACGTGTTGCACGGCCACCTGCTGAAGGACGGGGCCGGAATCAGTTACTTCCCCGATACTGGCCCAGGATTACGGACCAAGAGTTGCAGCAAATATCTGGAGATTCAAATTCCACAATTGTACCATTGTTTGAAAAGATGTTGAGTGCCAGTGATGCGGGTCGTATTGGTCGTTTAGTGCTCCCTAAAGCATGTGCTGAAGCATATTTTCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTAAGGATTCAAGATGTGAAGGGAAAAGAATGGGTGTTTCAGTTCAGATTCTGGCCTAACAATAATAGTAGGATGTATGTGTTAGAGGGTGTAACTCCCTGCATACAGTCAATGCAGTTGCAGGCTGGAGATACTGTGACTTTCAGTCGTATGGAACCTGAAGGAAAGCTTATTATGGGGTTTCGAAAGGCATCAAATTCTGTTGCAATGCAGGACACCCATCTTTCTGCCATTCACAATGGCGCTCACTCAAGTGAAACTTTCTTTTCGGGTGTTCTTGAGAACCTTCCTGTAATAAGTGGTTACTCTGGTCTTCTTCAGTCAACGAAGGGCATGGATCCGCATCTAAGTGCACTGCCCAAACAATTAACTGCAGCTACTGGTGATCCGAGCTGGCATAAATCTGAAAAGCGTGAAATCAGGACAAGGGAAGGCTTGCTGCTGCAATCGTTAGTGATTCCGGAGAGAAAAAGAACTAGAAATATTGGGTCCAAGAGTAAAAGGTTGCTCATTGATAGCCAAGATGCTCTAGAGCTGAAGCTTACTTGGGAAGAGGCTCAGGATTTGCTTCGTCCACCTCCAGCTGTTAAGCCAAGCACTGTCATGATTGAGGATCTTGAATTCGAAGAATATGAAGAACCTCCTGTGTTTGGAAAAAGGAGTATCTTCATAGTCCGGTCAACTGGGGAACATGAGCAATGGGCTCAGTGTGATGGTTGCTCTAAATGGCGAAGGTTGCCGGTTGATGTACTACTTCCATCTAAGTGGATGTGTACGGACAATGTTTGGGATCAAAACAGGTGTTCGTGCTCCGCACCAGATGAATTAACCCCTAGGGAACTGGAAAGTTTTCTCAGACTCAGTAAAGAATTCAAGAAAAGGAGAATGGCAACAAACCATAGGCCAATCCAGGAACATGAATCTTCTGGCCTTGATGCTTTGGCCAATGCTGCAATCCTTGGAGACAATGTGGCTGACCCAGGAACTGCATCAGTTGCTACAACAACAAAACATCCCAGGCATCGTCCTGGCTGCTCATGCATTGTGTGCATCCAGCCCCCAAGTGGGAAGGGCAAGCATAAGCCTTCATGCACATGCCAGGTGTGCATGACAGTTAAACGCCGTTTTAAAACCCTAATGATAAACAAGAAGAAACGTCAATCAGAACGTGAAGCAGAGATTGCCTGTAGAAACCAGCTTGCATGGGGCCCTAGGGATGAAGCAGAAGTAGACAGCACTTCTAGGCATGTATCATCACACCTTGATCCTTCAGACAATGAAGCCAAGTCTCCAAATGAATCAGAATCTAAGAGCCAACTTAAATTGGCGGAAAGTGGGAAGGGAAAGTTAGACTTGAATTGCCATCCTGGCCGAGAAGTAGACTTGCCAGCGGGGCCAAGTCAGTTGAGCATGATGTCCCTTCTTCAGGTAGCAACCCTTCCTCTACAGAGTTATTTGAAACAAACTGGTCTTACCAGCTTGGTAACTGAACAGCAGACAAGCTCAACATCACCTGTGCCTCTGCAAGCTACTGAGGGGAATGAGGAACAACTTAATGAGGATCAATGTGTTGTTTCTGTTGTTCAAGAGGGGGAAAGTGGAGGTGACGAAAGGCAGGATCAAAGCCAAGAGGATCCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 zf-CW

Protein Analysis

907

Amino Acids

100.09

Weight (kDa)

6.48

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_VAL1_N PF25813 49 - 97 2.8e-21 VAL1-like, N-terminal zinc finger domain
B3 PF02362 324 - 423 3.8e-15 B3 DNA binding domain
zf-CW PF07496 593 - 635 1.7e-10 CW-type Zinc Finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AarI CACCTGC 2 cut(s) 688, 868
Acc36I ACCTGC 2 cut(s) 688, 868
AccI GTMKAC 2 cut(s) 2310, 2460
AccII CGCG 1 cut(s) 26
AccIII TCCGGA 1 cut(s) 1540
AciI CCGC 8 cut(s) 33, 111, 647, 998, 1421, 1893, 2408, 2471
AcoI YGGCCR 3 cut(s) 854, 2022, 2449
AcsI RAATTY 8 cut(s) 280, 600, 655, 820, 949, 1276, 1700, 1949
AcuI CTGAAG 8 cut(s) 348, 885, 1059, 1260, 1382, 1637, 2334, 2489
AcvI CACGTG 1 cut(s) 845
AfaI GTAC 3 cut(s) 963, 1830, 1855
AfiI CCNNNNNNNGG 9 cut(s) 171, 704, 710, 866, 900, 1730, 2144, 2145, 2506
AflIII ACRYGT 2 cut(s) 24, 844
AhdI GACNNNNNGTC 1 cut(s) 1224
AleI CACNNNNGTG 1 cut(s) 1332
Alw21I GWGCWC 6 cut(s) 41, 47, 679, 1023, 1435, 1892
Alw26I GTCTC 3 cut(s) 768, 2037, 2373
Alw44I GTGCAC 2 cut(s) 675, 1431
AlwNI CAGNNNCTG 4 cut(s) 521, 1131, 1460, 2066
Ama87I CYCGRG 1 cut(s) 40
Aor13HI TCCGGA 1 cut(s) 1540
ApaI GGGCCC 1 cut(s) 2291
ApaLI GTGCAC 2 cut(s) 675, 1431
ApeKI GCWGC 6 cut(s) 928, 1454, 1519, 1522, 2030, 2112
ApoI RAATTY 8 cut(s) 280, 600, 655, 820, 949, 1276, 1700, 1949
Asp700I GAANNNNTTC 2 cut(s) 642, 1929
AspA2I CCTAGG 3 cut(s) 670, 1913, 2291
AspLEI GCGC 2 cut(s) 182, 1325
AsuHPI GGTGA 4 cut(s) 284, 1475, 2583, 2696
AsuII TTCGAA 2 cut(s) 1264, 1704
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 3 cut(s) 323, 916, 1569
AvrII CCTAGG 3 cut(s) 670, 1913, 2291
AxyI CCTNAGG 1 cut(s) 1068
BaeGI GKGCMC 3 cut(s) 679, 1435, 2291
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BalI TGGCCA 1 cut(s) 2024
BamHI GGATCC 3 cut(s) 4, 1417, 2713
BanII GRGCYC 5 cut(s) 41, 47, 444, 1786, 2291
BarI GAAGNNNNNNTAC 2 cut(s) 2502, 2534
BbrPI CACGTG 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 1385
Bbv12I GWGCWC 6 cut(s) 41, 47, 679, 1023, 1435, 1892
BbvI GCAGC 6 cut(s) 940, 1466, 1506, 1509, 2017, 2099
BccI CCATC 6 cut(s) 314, 409, 1308, 1787, 1846, 2451
BceAI ACGGC 2 cut(s) 869, 2187
BcoDI GTCTC 3 cut(s) 768, 2037, 2373
BfaI CTAG 9 cut(s) 303, 671, 729, 759, 1557, 1610, 1914, 2292, 2322
BfmI CTRYAG 4 cut(s) 681, 1452, 2266, 2525
BfoI RGCGCY 1 cut(s) 1326
BfuAI ACCTGC 2 cut(s) 688, 868
BglI GCCNNNNNGGC 2 cut(s) 2448, 2473
BisI GCNGC 6 cut(s) 929, 1455, 1520, 1523, 2031, 2113
BlnI CCTAGG 3 cut(s) 670, 1913, 2291
BlsI GCNGC 6 cut(s) 930, 1456, 1521, 1524, 2032, 2114
Bme18I GGWCC 3 cut(s) 323, 916, 1569
BmeRI GACNNNNNGTC 1 cut(s) 1224
BmeT110I CYCGRG 1 cut(s) 40
BmiI GGNNCC 9 cut(s) 6, 875, 1236, 1419, 1570, 2288, 2289, 2475, 2715
BmrI ACTGGG 1 cut(s) 1773
BmsI GCATC 9 cut(s) 205, 985, 1280, 1432, 1594, 2005, 2078, 2110, 2139
BmuI ACTGGG 1 cut(s) 1773
BpiI GAAGAC 1 cut(s) 1385
BpmI CTGGAG 3 cut(s) 960, 1227, 1644
Bpu10I CCTNAGC 2 cut(s) 443, 1638
Bpu14I TTCGAA 2 cut(s) 1264, 1704
BpuEI CTTGAG 2 cut(s) 1315, 1379
BsaAI YACGTR 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 1422
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 7 cut(s) 670, 905, 1913, 2038, 2059, 2096, 2291
BsaWI WCCGGW 3 cut(s) 164, 1540, 1755
BsaXI ACNNNNNCTCC 4 cut(s) 1200, 1230, 2034, 2064
Bsc4I CCNNNNNNNGG 9 cut(s) 171, 704, 710, 866, 900, 1730, 2144, 2145, 2506
Bse118I RCCGGY 1 cut(s) 1819
Bse1I ACTGG 6 cut(s) 905, 990, 1465, 1768, 1926, 2551
Bse21I CCTNAGG 1 cut(s) 1068
Bse3DI GCAATG 3 cut(s) 213, 1293, 1784
Bse8I GATNNNNATC 1 cut(s) 1422
BseAI TCCGGA 1 cut(s) 1540
BseDI CCNNGG 7 cut(s) 670, 905, 1913, 2038, 2059, 2096, 2291
BseGI GGATG 9 cut(s) 511, 566, 734, 1158, 1854, 2092, 2130, 2302, 2443
BseJI GATNNNNATC 1 cut(s) 1422
BseLI CCNNNNNNNGG 9 cut(s) 171, 704, 710, 866, 900, 1730, 2144, 2145, 2506
BseMI GCAATG 3 cut(s) 213, 1293, 1784
BseMII CTCAG 8 cut(s) 457, 476, 1059, 1652, 1799, 1948, 1954, 2604
BseNI ACTGG 6 cut(s) 905, 990, 1465, 1768, 1926, 2551
BseSI GKGCMC 3 cut(s) 679, 1435, 2291
BseXI GCAGC 6 cut(s) 940, 1466, 1506, 1509, 2017, 2099
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 6 cut(s) 41, 47, 679, 1023, 1435, 1892
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 5 cut(s) 165, 877, 1541, 1756, 1820
BslFI GGGAC 2 cut(s) 127, 2482
BslI CCNNNNNNNGG 9 cut(s) 171, 704, 710, 866, 900, 1730, 2144, 2145, 2506
BsmAI GTCTC 3 cut(s) 768, 2037, 2373
BsmFI GGGAC 2 cut(s) 127, 2482
Bso31I GGTCTC 1 cut(s) 768
BsoBI CYCGRG 1 cut(s) 40
Bsp119I TTCGAA 2 cut(s) 1264, 1704
Bsp120I GGGCCC 1 cut(s) 2287
Bsp1286I GDGCHC 9 cut(s) 41, 47, 444, 679, 1023, 1435, 1786, 1892, 2291
Bsp13I TCCGGA 1 cut(s) 1540
BspACI CCGC 8 cut(s) 33, 111, 647, 998, 1421, 1893, 2408, 2471
BspCNI CTCAG 8 cut(s) 456, 475, 1060, 1651, 1798, 1947, 1953, 2605
BspEI TCCGGA 1 cut(s) 1540
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 1683
BspLI GGNNCC 9 cut(s) 6, 875, 1236, 1419, 1570, 2288, 2289, 2475, 2715
BspMAI CTGCAG 2 cut(s) 685, 1456
BspMI ACCTGC 2 cut(s) 688, 868
BspT104I TTCGAA 2 cut(s) 1264, 1704
BspTNI GGTCTC 1 cut(s) 768
BsrDI GCAATG 3 cut(s) 213, 1293, 1784
BsrFI RCCGGY 1 cut(s) 1819
BsrI ACTGG 6 cut(s) 905, 990, 1465, 1768, 1926, 2551
BssAI RCCGGY 1 cut(s) 1819
BssECI CCNNGG 7 cut(s) 670, 905, 1913, 2038, 2059, 2096, 2291
BssT1I CCWWGG 4 cut(s) 670, 1913, 2038, 2291
Bst4CI ACNGT 6 cut(s) 248, 478, 1188, 1216, 1681, 2194
Bst6I CTCTTC 1 cut(s) 1626
BstAPI GCANNNNNTGC 5 cut(s) 689, 848, 2075, 2127, 2261
BstBAI YACGTR 1 cut(s) 845
BstBI TTCGAA 2 cut(s) 1264, 1704
BstC8I GCNNGC 7 cut(s) 1203, 1475, 1517, 2156, 2280, 2469, 2607
BstENI CCTNNNNNAGG 2 cut(s) 864, 2504
BstF5I GGATG 9 cut(s) 511, 566, 734, 1158, 1854, 2092, 2130, 2302, 2443
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 1326
BstHHI GCGC 2 cut(s) 182, 1325
BstMAI GTCTC 3 cut(s) 768, 2037, 2373
BstMCI CGRYCG 1 cut(s) 51
BstNSI RCATGY 4 cut(s) 728, 1035, 2178, 2330
BstSFI CTRYAG 4 cut(s) 681, 1452, 2266, 2525
BstSLI GKGCMC 3 cut(s) 679, 1435, 2291
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 6 cut(s) 940, 1466, 1506, 1509, 2017, 2099
BstV2I GAAGAC 1 cut(s) 1385
BstX2I RGATCY 4 cut(s) 4, 1417, 1693, 2713
BstXI CCANNNNNNTGG 2 cut(s) 811, 1845
BstYI RGATCY 4 cut(s) 4, 1417, 1693, 2713
Bsu36I CCTNAGG 1 cut(s) 1068
BtsCI GGATG 9 cut(s) 511, 566, 734, 1158, 1854, 2092, 2130, 2302, 2443
BtsI GCAGTG 2 cut(s) 268, 1433
BtsIMutI CAGTG 7 cut(s) 253, 268, 349, 997, 1433, 1677, 1793
BveI ACCTGC 2 cut(s) 688, 868
Cac8I GCNNGC 7 cut(s) 1203, 1475, 1517, 2156, 2280, 2469, 2607
CaiI CAGNNNCTG 4 cut(s) 521, 1131, 1460, 2066
CciI TCATGA 1 cut(s) 1683
CfoI GCGC 2 cut(s) 182, 1325
Cfr10I RCCGGY 1 cut(s) 1819
Csp6I GTAC 3 cut(s) 962, 1829, 1854
CviQI GTAC 3 cut(s) 962, 1829, 1854
DraI TTTAAA 1 cut(s) 2209
DriI GACNNNNNGTC 1 cut(s) 1224
EaeI YGGCCR 3 cut(s) 854, 2022, 2449
Eam1104I CTCTTC 1 cut(s) 1626
Eam1105I GACNNNNNGTC 1 cut(s) 1224
EarI CTCTTC 1 cut(s) 1626
EciI GGCGGA 1 cut(s) 2423
Ecl136II GAGCTC 2 cut(s) 39, 45
Eco130I CCWWGG 4 cut(s) 670, 1913, 2038, 2291
Eco24I GRGCYC 5 cut(s) 41, 47, 444, 1786, 2291
Eco31I GGTCTC 1 cut(s) 768
Eco47I GGWCC 3 cut(s) 323, 916, 1569
Eco53kI GAGCTC 2 cut(s) 39, 45
Eco57I CTGAAG 8 cut(s) 348, 885, 1059, 1260, 1382, 1637, 2334, 2489
Eco72I CACGTG 1 cut(s) 845
Eco81I CCTNAGG 1 cut(s) 1068
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 2 cut(s) 39, 45
EcoNI CCTNNNNNAGG 2 cut(s) 864, 2504
EcoO109I RGGNCCY 3 cut(s) 1072, 2287, 2288
EcoRI GAATTC 2 cut(s) 1700, 1949
EcoT14I CCWWGG 4 cut(s) 670, 1913, 2038, 2291
EcoT22I ATGCAT 1 cut(s) 2123
EcoT38I GRGCYC 5 cut(s) 41, 47, 444, 1786, 2291
ErhI CCWWGG 4 cut(s) 670, 1913, 2038, 2291
FalI AAGNNNNNCTT 8 cut(s) 390, 422, 1233, 1265, 1324, 1356, 2417, 2449
FaqI GGGAC 2 cut(s) 127, 2482
FauI CCCGC 4 cut(s) 26, 104, 991, 2464
FauNDI CATATG 1 cut(s) 121
FblI GTMKAC 2 cut(s) 2310, 2460
Fnu4HI GCNGC 6 cut(s) 929, 1455, 1520, 1523, 2031, 2113
FokI GGATG 9 cut(s) 518, 553, 721, 1165, 1861, 2079, 2117, 2309, 2430
FriOI GRGCYC 5 cut(s) 41, 47, 444, 1786, 2291
Fsp4HI GCNGC 6 cut(s) 929, 1455, 1520, 1523, 2031, 2113
FspBI CTAG 9 cut(s) 303, 671, 729, 759, 1557, 1610, 1914, 2292, 2322
GlaI GCGC 2 cut(s) 181, 1324
GluI GCNGC 6 cut(s) 929, 1455, 1520, 1523, 2031, 2113
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 3 cut(s) 960, 1227, 1644
HaeII RGCGCY 1 cut(s) 1326
HapII CCGG 5 cut(s) 165, 877, 1541, 1756, 1820
HhaI GCGC 2 cut(s) 182, 1325
Hin6I GCGC 2 cut(s) 180, 1323
HinP1I GCGC 2 cut(s) 180, 1323
HincII GTYRAC 2 cut(s) 1404, 1761
HindII GTYRAC 2 cut(s) 1404, 1761
HindIII AAGCTT 3 cut(s) 404, 1247, 1619
HpaII CCGG 5 cut(s) 165, 877, 1541, 1756, 1820
HphI GGTGA 4 cut(s) 284, 1475, 2583, 2696
Hpy166II GTNNAC 9 cut(s) 266, 677, 1404, 1433, 1655, 1761, 1854, 2311, 2461
Hpy8I GTNNAC 9 cut(s) 266, 677, 1404, 1433, 1655, 1761, 1854, 2311, 2461
HpyCH4III ACNGT 6 cut(s) 248, 478, 1188, 1216, 1681, 2194
HpyCH4IV ACGT 3 cut(s) 844, 2236, 2248
HpySE526I ACGT 3 cut(s) 844, 2236, 2248
HspAI GCGC 2 cut(s) 180, 1323
Kpn2I TCCGGA 1 cut(s) 1540
LmnI GCTCC 6 cut(s) 36, 364, 523, 755, 1026, 1895
Lsp1109I GCAGC 6 cut(s) 940, 1466, 1506, 1509, 2017, 2099
LweI GCATC 9 cut(s) 205, 985, 1280, 1432, 1594, 2005, 2078, 2110, 2139
MaeI CTAG 9 cut(s) 303, 671, 729, 759, 1557, 1610, 1914, 2292, 2322
MaeII ACGT 3 cut(s) 844, 2236, 2248
MaeIII GTNAC 9 cut(s) 101, 305, 383, 885, 1171, 1216, 1382, 2563, 2684
MfeI CAATTG 2 cut(s) 374, 957
MflI RGATCY 4 cut(s) 4, 1417, 1693, 2713
MhlI GDGCHC 9 cut(s) 41, 47, 444, 679, 1023, 1435, 1786, 1892, 2291
MlsI TGGCCA 1 cut(s) 2024
MluI ACGCGT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 2024
MlyI GAGTC 2 cut(s) 235, 1932
MmeI TCCRAC 1 cut(s) 149
Mox20I TGGCCA 1 cut(s) 2024
Mph1103I ATGCAT 1 cut(s) 2123
MroI TCCGGA 1 cut(s) 1540
MroXI GAANNNNTTC 2 cut(s) 642, 1929
MscI TGGCCA 1 cut(s) 2024
MseI TTAA 9 cut(s) 558, 1082, 1448, 1668, 1907, 2196, 2208, 2400, 2634
MslI CAYNNNNRTG 5 cut(s) 1332, 1428, 1682, 1843, 2173
Msp20I TGGCCA 1 cut(s) 2024
MspA1I CMGCKG 2 cut(s) 1664, 2471
MspI CCGG 5 cut(s) 165, 877, 1541, 1756, 1820
MunI CAATTG 2 cut(s) 374, 957
MvnI CGCG 1 cut(s) 26
NdeI CATATG 1 cut(s) 121
NlaIV GGNNCC 9 cut(s) 6, 875, 1236, 1419, 1570, 2288, 2289, 2475, 2715
NmeAIII GCCGAG 1 cut(s) 2477
NmuCI GTSAC 4 cut(s) 101, 305, 1216, 2684
NsiI ATGCAT 1 cut(s) 2123
NspI RCATGY 4 cut(s) 728, 1035, 2178, 2330
NspV TTCGAA 2 cut(s) 1264, 1704
OliI CACNNNNGTG 1 cut(s) 1332
PaeR7I CTCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 1683
PaqCI CACCTGC 2 cut(s) 688, 868
PcsI WCGNNNNNNNCGW 1 cut(s) 1009
PdmI GAANNNNTTC 2 cut(s) 642, 1929
PfoI TCCNGGA 2 cut(s) 221, 1989
PkrI GCNGC 6 cut(s) 930, 1456, 1521, 1524, 2032, 2114
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 2 cut(s) 234, 1932
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 2 cut(s) 234, 1932
Ppu21I YACGTR 1 cut(s) 845
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 2 cut(s) 41, 47
PspCI CACGTG 1 cut(s) 845
PspFI CCCAGC 1 cut(s) 66
PspN4I GGNNCC 9 cut(s) 6, 875, 1236, 1419, 1570, 2288, 2289, 2475, 2715
PspOMI GGGCCC 1 cut(s) 2287
PspXI VCTCGAGB 1 cut(s) 40
PstI CTGCAG 2 cut(s) 685, 1456
PstNI CAGNNNCTG 4 cut(s) 521, 1131, 1460, 2066
PsuI RGATCY 4 cut(s) 4, 1417, 1693, 2713
PvuI CGATCG 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 1664
RsaI GTAC 3 cut(s) 963, 1830, 1855
RsaNI GTAC 3 cut(s) 962, 1829, 1854
RseI CAYNNNNRTG 5 cut(s) 1332, 1428, 1682, 1843, 2173
SacI GAGCTC 2 cut(s) 41, 47
SaqAI TTAA 9 cut(s) 558, 1082, 1448, 1668, 1907, 2196, 2208, 2400, 2634
SatI GCNGC 6 cut(s) 929, 1455, 1520, 1523, 2031, 2113
SbfI CCTGCAGG 1 cut(s) 685
SchI GAGTC 2 cut(s) 235, 1932
SdaI CCTGCAGG 1 cut(s) 685
SduI GDGCHC 9 cut(s) 41, 47, 444, 679, 1023, 1435, 1786, 1892, 2291
SfaNI GCATC 9 cut(s) 205, 985, 1280, 1432, 1594, 2005, 2078, 2110, 2139
SfcI CTRYAG 4 cut(s) 681, 1452, 2266, 2525
Sfr274I CTCGAG 1 cut(s) 40
SfuI TTCGAA 2 cut(s) 1264, 1704
SinI GGWCC 3 cut(s) 323, 916, 1569
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 5 cut(s) 1332, 1428, 1682, 1843, 2173
SmlI CTYRAG 3 cut(s) 40, 1330, 1358
SmoI CTYRAG 3 cut(s) 40, 1330, 1358
Sse8387I CCTGCAGG 1 cut(s) 685
SsiI CCGC 8 cut(s) 33, 111, 647, 998, 1421, 1893, 2408, 2471
SspI AATATT 1 cut(s) 1564
SspMI CTAG 9 cut(s) 303, 671, 729, 759, 1557, 1610, 1914, 2292, 2322
SstI GAGCTC 2 cut(s) 41, 47
StyI CCWWGG 4 cut(s) 670, 1913, 2038, 2291
TaaI ACNGT 6 cut(s) 248, 478, 1188, 1216, 1681, 2194
TaiI ACGT 3 cut(s) 847, 2239, 2251
TaqI TCGA 6 cut(s) 41, 47, 51, 393, 1264, 1704
TatI WGTACW 1 cut(s) 1828
Tru1I TTAA 9 cut(s) 558, 1082, 1448, 1668, 1907, 2196, 2208, 2400, 2634
Tru9I TTAA 9 cut(s) 558, 1082, 1448, 1668, 1907, 2196, 2208, 2400, 2634
TscAI CASTG 7 cut(s) 253, 275, 349, 997, 1440, 1684, 1793
TseFI GTSAC 4 cut(s) 101, 305, 1216, 2684
TseI GCWGC 6 cut(s) 928, 1454, 1519, 1522, 2030, 2112
Tsp45I GTSAC 4 cut(s) 101, 305, 1216, 2684
TspGWI ACGGA 2 cut(s) 929, 1871
TspRI CASTG 7 cut(s) 253, 275, 349, 997, 1440, 1684, 1793
VneI GTGCAC 2 cut(s) 675, 1431
VpaK11BI GGWCC 3 cut(s) 323, 916, 1569
XagI CCTNNNNNAGG 2 cut(s) 864, 2504
XapI RAATTY 8 cut(s) 280, 600, 655, 820, 949, 1276, 1700, 1949
XbaI TCTAGA 1 cut(s) 1609
XceI RCATGY 4 cut(s) 728, 1035, 2178, 2330
XcmI CCANNNNNNNNNTGG 1 cut(s) 2141
XhoI CTCGAG 1 cut(s) 40
XmaJI CCTAGG 3 cut(s) 670, 1913, 2291
XmiI GTMKAC 2 cut(s) 2310, 2460
XmnI GAANNNNTTC 2 cut(s) 642, 1929
XspI CTAG 9 cut(s) 303, 671, 729, 759, 1557, 1610, 1914, 2292, 2322
Zsp2I ATGCAT 1 cut(s) 2123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.