Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Reverse (-)

69911 .. 72138

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGTGAGTGATCTCCCGCTTGATGAAGATGATATCGCTCTCCTCAAGAGTCCTTATATAGGTGAAATTGTTGAAGAAATTGGCTTTGTGAGAGAAAAGCGCATTGCTCATTGTATTGTTCAGTGTGATGATGGTGGTGATGAGGACGTCAACTCTGCTCCAAACATTTTCACTTATGATAATGTGCCTCTTAAGAAGCGCCACTACCTTGGGACAAGTGACACTTTCAGAAGCTTTGAGCCGTTGAACGAACACGCATGTATTGTATGCGATATTGCAGACGATGGTGTAGTACCTTGTTCTGGGAATGAATGCCCTCTCGCTGTTCACAGGAAGTGTGTTGAGCTTGATTGTGAAGATCCTGCAACCTTTTACTGTCCCTATTGTTGGTTTAAGGAGCAAGCTACTAGATCCACGGCTTTGAGAACAAGGGGTGTTGCAGCTGCGAAGACCCTTGTTCAATATGGATGTAGTGAGCTGAGGAGTGGAGATATAGTCATGACGAGAGAAAACAGTCAACTAGAGAATGGTTCTGATAATTCACTACCAATGCAACTACATGAGAACCTTCATCAATTACAAGAACTGGTCAAGCACCTTAAGGCTCGAAATTCCCAGTTAGACGAGTCAACAGATCAATTCATTGATATGGAGAAATCTTGCGGAGAAGCTTATGCTGTTGTTAATGATCAGCCAAAAAGGGTACTATGGACAGTCAACGAAGAGAAGATGTTGAGGGAGGGAGTGGAGAAATTTTCTGATACAATCAACAAAAACATGCCTTGGAAGAAGATTTTGGAGATGGGAAAAGGTATATTCCACACAACTCGTAATTCCTCCGATCTTAAGGACAAATGGAGAAATATGAATTATCTTGATTTGGTTGAGGTCGAGATTGACATCATCATCGTCGTCGCAGAGATCGGAGATCAAAATGGAGAGGGAAAGAAACGCAGGAGTGATGAAGAAGATGAGTCCAACAGGAACCATCCAAAGATTAGAATTTGTGGGATGGTATTTGTAAAGCCAATAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

345

Amino Acids

39.22

Weight (kDa)

4.96

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AciI	CCGC	2 cut(s)	17, 663
AclWI	GGATC	2 cut(s)	353, 405
AcsI	RAATTY	3 cut(s)	610, 752, 1002
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	294, 705
AfiI	CCNNNNNNNGG	3 cut(s)	59, 302, 387
AflII	CTTAAG	3 cut(s)	191, 599, 845
AgsI	TTSAA	3 cut(s)	74, 247, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AluBI	AGCT	6 cut(s)	234, 346, 404, 443, 478, 671
AluI	AGCT	6 cut(s)	234, 346, 404, 443, 478, 671
AlwI	GGATC	2 cut(s)	353, 405
ApeKI	GCWGC	2 cut(s)	440, 443
ApoI	RAATTY	3 cut(s)	610, 752, 1002
AspLEI	GCGC	2 cut(s)	102, 201
AsuHPI	GGTGA	3 cut(s)	16, 74, 149
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BbsI	GAAGAC	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	430, 452
BccI	CCATC	5 cut(s)	125, 278, 796, 996, 1006
BceAI	ACGGC	2 cut(s)	226, 432
BclI	TGATCA	1 cut(s)	688
BfaI	CTAG	2 cut(s)	408, 521
BfoI	RGCGCY	1 cut(s)	202
BfrI	CTTAAG	3 cut(s)	191, 599, 845
BisI	GCNGC	2 cut(s)	441, 444
BlsI	GCNGC	2 cut(s)	442, 445
BmiI	GGNNCC	1 cut(s)	986
BmrI	ACTGGG	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	899
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	208, 414, 782
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 302, 387
Bse1I	ACTGG	2 cut(s)	591, 616
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	899
BseDI	CCNNGG	3 cut(s)	208, 414, 782
BseGI	GGATG	3 cut(s)	473, 988, 1017
BseJI	GATNNNNATC	1 cut(s)	899
BseLI	CCNNNNNNNGG	3 cut(s)	59, 302, 387
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	2 cut(s)	591, 616
BseRI	GAGGAG	2 cut(s)	32, 496
BseXI	GCAGC	2 cut(s)	430, 452
BslFI	GGGAC	2 cut(s)	226, 363
BslI	CCNNNNNNNGG	3 cut(s)	59, 302, 387
BsmFI	GGGAC	2 cut(s)	226, 363
BsmI	GAATGC	1 cut(s)	317
Bsp143I	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
BspACI	CCGC	2 cut(s)	17, 663
BspCNI	CTCAG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	986
BspPI	GGATC	2 cut(s)	353, 405
BspTI	CTTAAG	3 cut(s)	191, 599, 845
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	591, 616
BssECI	CCNNGG	3 cut(s)	208, 414, 782
BssMI	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	2 cut(s)	208, 782
Bst4CI	ACNGT	3 cut(s)	377, 515, 715
Bst6I	CTCTTC	1 cut(s)	717
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	3 cut(s)	191, 599, 845
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	479, 1035
BstDSI	CCRYGG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	473, 988, 1017
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	102, 201
BstKTI	GATC	8 cut(s)	13, 361, 413, 637, 691, 844, 924, 931
BstMBI	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
BstNSI	RCATGY	2 cut(s)	261, 781
BstV1I	GCAGC	2 cut(s)	430, 452
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	358, 410
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstYI	RGATCY	2 cut(s)	358, 410
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	473, 988, 1017
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	2 cut(s)	102, 201
Csp6I	GTAC	2 cut(s)	293, 704
CviAII	CATG	4 cut(s)	258, 499, 560, 778
CviQI	GTAC	2 cut(s)	293, 704
DdeI	CTNAG	2 cut(s)	479, 1035
DpnI	GATC	8 cut(s)	12, 360, 412, 636, 690, 843, 923, 930
DpnII	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	208, 782
Eco32I	GATATC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	208, 782
ErhI	CCWWGG	2 cut(s)	208, 782
FaeI	CATG	4 cut(s)	261, 502, 563, 781
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	2 cut(s)	226, 363
FatI	CATG	4 cut(s)	257, 498, 559, 777
FauI	CCCGC	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	2 cut(s)	441, 444
FokI	GGATG	3 cut(s)	480, 975, 1024
Fsp4HI	GCNGC	2 cut(s)	441, 444
FspBI	CTAG	2 cut(s)	408, 521
GlaI	GCGC	2 cut(s)	101, 200
GluI	GCNGC	2 cut(s)	441, 444
HaeII	RGCGCY	1 cut(s)	202
HhaI	GCGC	2 cut(s)	102, 201
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	261, 502, 563, 781
Hin6I	GCGC	2 cut(s)	100, 199
HinP1I	GCGC	2 cut(s)	100, 199
HincII	GTYRAC	4 cut(s)	151, 518, 630, 718
HindII	GTYRAC	4 cut(s)	151, 518, 630, 718
HindIII	AAGCTT	2 cut(s)	232, 669
HinfI	GANTC	3 cut(s)	49, 626, 974
HphI	GGTGA	3 cut(s)	16, 74, 149
Hpy166II	GTNNAC	5 cut(s)	151, 328, 518, 630, 718
Hpy188I	TCNGA	5 cut(s)	230, 535, 760, 841, 926
Hpy188III	TCNNGA	4 cut(s)	46, 499, 875, 892
Hpy8I	GTNNAC	5 cut(s)	151, 328, 518, 630, 718
Hpy99I	CGWCG	2 cut(s)	914, 917
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	3 cut(s)	377, 515, 715
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	278, 365, 440, 553
HpyF3I	CTNAG	2 cut(s)	479, 1035
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	261, 502, 563, 781
HspAI	GCGC	2 cut(s)	100, 199
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
LmnI	GCTCC	2 cut(s)	163, 397
LpnPI	CCDG	7 cut(s)	288, 316, 375, 572, 629, 940, 967
Lsp1109I	GCAGC	2 cut(s)	430, 452
MaeI	CTAG	2 cut(s)	408, 521
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	8 cut(s)	12, 360, 412, 636, 690, 843, 923, 930
MboI	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
MflI	RGATCY	2 cut(s)	358, 410
MlyI	GAGTC	3 cut(s)	58, 635, 983
MmeI	TCCRAC	1 cut(s)	1002
MseI	TTAA	5 cut(s)	192, 393, 600, 684, 846
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	443
MspCI	CTTAAG	3 cut(s)	191, 599, 845
Mva1269I	GAATGC	1 cut(s)	317
NdeII	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
NlaIII	CATG	4 cut(s)	261, 502, 563, 781
NlaIV	GGNNCC	1 cut(s)	986
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	261, 781
PagI	TCATGA	1 cut(s)	498
PctI	GAATGC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	442, 445
PleI	GAGTC	3 cut(s)	57, 634, 982
PpsI	GAGTC	3 cut(s)	57, 634, 982
PspN4I	GGNNCC	1 cut(s)	986
PsuI	RGATCY	2 cut(s)	358, 410
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	294, 705
RsaNI	GTAC	2 cut(s)	293, 704
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	5 cut(s)	192, 393, 600, 684, 846
SatI	GCNGC	2 cut(s)	441, 444
Sau3AI	GATC	8 cut(s)	10, 358, 410, 634, 688, 841, 921, 928
SchI	GAGTC	3 cut(s)	58, 635, 983
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	4 cut(s)	44, 191, 599, 845
SmoI	CTYRAG	4 cut(s)	44, 191, 599, 845
SsiI	CCGC	2 cut(s)	17, 663
SspMI	CTAG	2 cut(s)	408, 521
StyI	CCWWGG	2 cut(s)	208, 782
TaaI	ACNGT	3 cut(s)	377, 515, 715
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	607, 891
Tru1I	TTAA	5 cut(s)	192, 393, 600, 684, 846
Tru9I	TTAA	5 cut(s)	192, 393, 600, 684, 846
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	2 cut(s)	440, 443
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	6 cut(s)	39, 324, 560, 631, 881, 978
TspRI	CASTG	1 cut(s)	128
Vha464I	CTTAAG	3 cut(s)	191, 599, 845
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	3 cut(s)	610, 752, 1002
XceI	RCATGY	2 cut(s)	261, 781
XspI	CTAG	2 cut(s)	408, 521
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.