Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Reverse (-)

999102 .. 1001056

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGATTGAGAAGAAACTGTCGAAGATGAAGATGAGAACCAAATCGATTCCGGTTAGGTCTTCGCGCAAATCCCTCGATTCGCTTCTGGATGATGAAGCTAATGAAAACACACAATGTGATGAAAGAGATGTGCCACACAAGAAGCGTCGTTGTCTTGGGACTAGTGAGACTACTGATAGAGGAGGATCTGTAGAGCCGCTGCTGGACTTGGATGCTTGTATTGTATGTGAAGTTTCAGACGAGCGGGTATCTCGTTGTTGCGGGGTTGACTGTCTTCTTTCGTTTCACGGCGAGTGTTTGTATGCTGATTTGGGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTGAGGATGTTTCGAATCCATTTTGTCCTTATTGCTGGCTCAAGATTGTTGCACTGAAATCCAAAACATTGAGAGAAAAGACCGTTGAGGCGGAAAAGGCGGTCTGCAAGTATCTAGATAAAGAGATGAAAAGCAGGGATGAGGATATAACCTTATCTGGTGATGAAATTGGAAACCAAGAGCAGAGTACAGACATTGTAAGTGATCATGAGTTACAAGGAGAGAAGGATGGCTGTTCATCAAAACCAGATGCGGATCAAGGGAAAGTGGGTACTGGTAAAGTGATTGACGAAGTTGGAGCATCAGAGAAGGTAGCTACAGAAAAATTTCAAGACGCTGAAGATGATGAAACAGCTAAAGATCAAGGTACAAGAATCCTGAATACAGGTGCAGGGAAAAAGAGAGAGGTTTCTTCGTTTTTGTCTATGCAAGAATCGTTTTCAGCAAAAGAACAGGACCAGGTCCAGCAGAATGAGAAGCGAAGAAGGAGAGGATTGAAAATTATCGATAGTGACATCTCATCAAAGGGATCAAGTAACGAACGAAATGGAGAAGATGTAACTGAGCAGGTAACTTCATCGGTTCAAGTAACCTCCCCGTCAGGGAGAATGAGGAACCAGCAGGCAACAACCAAAGTTGTGGCTAAGTCAAAGACAGTGAGGGACATTTCTTTCTTTAAGATGGATCAAAGAAGGAGGCTACTTTGGACGTACGAAGAAGAAGAGATGCTAAAGGTGGGAGTGGAGAAATTTGCAGCAGAAGCAAACAAGAACATGCCATGGAGGAAAATTCTGGAAATGGGAGAGAAGGTGTTCCACGAAACACGTACTCCAGCTGATCTCAAGGACAAATGGAGGAGCATGGTCAAGATTATGAACAAAAACGAACAAGGCAGCACACTAACCCCTACTGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

420

Amino Acids

47.04

Weight (kDa)

5.64

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	901
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	1 cut(s)	64
AciI	CCGC	6 cut(s)	197, 244, 261, 434, 443, 596
AclWI	GGATC	4 cut(s)	193, 606, 880, 1035
AcsI	RAATTY	3 cut(s)	668, 1091, 1131
AcuI	CTGAAG	1 cut(s)	702
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	6 cut(s)	319, 532, 616, 712, 1055, 1171
AfiI	CCNNNNNNNGG	1 cut(s)	945
AflIII	ACRYGT	1 cut(s)	1166
AgsI	TTSAA	3 cut(s)	674, 841, 929
AhlI	ACTAGT	2 cut(s)	161, 320
AjnI	CCWGG	1 cut(s)	801
AluBI	AGCT	4 cut(s)	98, 659, 698, 1178
AluI	AGCT	4 cut(s)	98, 659, 698, 1178
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	4 cut(s)	193, 606, 880, 1035
ApeKI	GCWGC	3 cut(s)	199, 1097, 1236
ApoI	RAATTY	3 cut(s)	668, 1091, 1131
Asp700I	GAANNNNTTC	2 cut(s)	669, 1154
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	799, 805
AsuHPI	GGTGA	1 cut(s)	515
AsuII	TTCGAA	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	799, 805
BbsI	GAAGAC	2 cut(s)	51, 266
BbvI	GCAGC	3 cut(s)	186, 1109, 1248
BccI	CCATC	2 cut(s)	566, 1018
BceAI	ACGGC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	1 cut(s)	803
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	2 cut(s)	161, 320
BfaI	CTAG	3 cut(s)	162, 321, 458
BfmI	CTRYAG	2 cut(s)	189, 660
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	4 cut(s)	197, 200, 1098, 1237
BlsI	GCNGC	4 cut(s)	198, 201, 1099, 1238
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	803
Bme18I	GGWCC	2 cut(s)	799, 805
BmgT120I	GGNCC	2 cut(s)	799, 805
BmiI	GGNNCC	1 cut(s)	959
BmrFI	CCNGG	1 cut(s)	803
BmsI	GCATC	4 cut(s)	202, 583, 653, 1059
BpiI	GAAGAC	2 cut(s)	51, 266
BpmI	CTGGAG	1 cut(s)	1158
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	368, 1169
Bsa29I	ATCGAT	2 cut(s)	44, 849
BsaAI	YACGTR	1 cut(s)	1169
BsaBI	GATNNNNATC	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	1121
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	8 cut(s)	174, 204, 885, 915, 1137, 1156, 1167, 1186
Bsc4I	CCNNNNNNNGG	1 cut(s)	945
Bse1I	ACTGG	1 cut(s)	622
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	803
BseCI	ATCGAT	2 cut(s)	44, 849
BseDI	CCNNGG	1 cut(s)	1121
BseGI	GGATG	5 cut(s)	94, 217, 355, 487, 577
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	1 cut(s)	945
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	2 cut(s)	195, 1213
BseXI	GCAGC	3 cut(s)	186, 1109, 1248
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	64
BshVI	ATCGAT	2 cut(s)	44, 849
BsiSI	CCGG	1 cut(s)	50
BsiWI	CGTACG	1 cut(s)	1053
BslFI	GGGAC	2 cut(s)	172, 1019
BslI	CCNNNNNNNGG	1 cut(s)	945
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	172, 1019
Bsp119I	TTCGAA	1 cut(s)	356
Bsp143I	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
Bsp19I	CCATGG	1 cut(s)	1121
BspACI	CCGC	6 cut(s)	197, 244, 261, 434, 443, 596
BspCNI	CTCAG	1 cut(s)	898
BspDI	ATCGAT	2 cut(s)	44, 849
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	959
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	4 cut(s)	193, 606, 880, 1035
BspT104I	TTCGAA	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	1121
BssMI	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
BssT1I	CCWWGG	1 cut(s)	1121
Bst2UI	CCWGG	1 cut(s)	803
Bst4CI	ACNGT	4 cut(s)	18, 272, 427, 1000
Bst6I	CTCTTC	1 cut(s)	1059
BstBAI	YACGTR	1 cut(s)	1169
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	380, 966
BstDEI	CTNAG	2 cut(s)	906, 987
BstDSI	CCRYGG	1 cut(s)	1121
BstF5I	GGATG	5 cut(s)	94, 217, 355, 487, 577
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	7 cut(s)	188, 550, 601, 706, 875, 1030, 1183
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 1103
BstNI	CCWGG	1 cut(s)	803
BstNSI	RCATGY	1 cut(s)	1120
BstSCI	CCNGG	1 cut(s)	801
BstSFI	CTRYAG	2 cut(s)	189, 660
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	186, 1109, 1248
BstV2I	GAAGAC	2 cut(s)	51, 266
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	982
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	2 cut(s)	44, 849
BsuTUI	ATCGAT	2 cut(s)	44, 849
BtgI	CCRYGG	1 cut(s)	1121
BtsCI	GGATG	5 cut(s)	94, 217, 355, 487, 577
BtsIMutI	CAGTG	2 cut(s)	395, 1005
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	2 cut(s)	380, 966
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	799, 805
ClaI	ATCGAT	2 cut(s)	44, 849
CseI	GACGC	2 cut(s)	134, 686
CsiI	ACCWGGT	1 cut(s)	801
Csp6I	GTAC	6 cut(s)	318, 531, 615, 711, 1054, 1170
CviAII	CATG	4 cut(s)	551, 1117, 1122, 1204
CviJI	RGCY	9 cut(s)	98, 196, 382, 576, 659, 698, 986, 1042, 1178
CviKI_1	RGCY	9 cut(s)	98, 196, 382, 576, 659, 698, 986, 1042, 1178
CviQI	GTAC	6 cut(s)	318, 531, 615, 711, 1054, 1170
DdeI	CTNAG	2 cut(s)	906, 987
DpnI	GATC	7 cut(s)	187, 549, 600, 705, 874, 1029, 1182
DpnII	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
DraIII	CACNNNGTG	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	1121
Eco47I	GGWCC	2 cut(s)	799, 805
Eco57I	CTGAAG	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	1121
ErhI	CCWWGG	1 cut(s)	1121
FaeI	CATG	4 cut(s)	554, 1120, 1125, 1207
FaqI	GGGAC	2 cut(s)	172, 1019
FatI	CATG	4 cut(s)	550, 1116, 1121, 1203
FauI	CCCGC	2 cut(s)	237, 254
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	4 cut(s)	197, 200, 1098, 1237
FokI	GGATG	5 cut(s)	101, 224, 362, 494, 584
Fsp4HI	GCNGC	4 cut(s)	197, 200, 1098, 1237
FspBI	CTAG	3 cut(s)	162, 321, 458
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	197, 200, 1098, 1237
GsuI	CTGGAG	1 cut(s)	1158
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	2 cut(s)	134, 686
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	554, 1120, 1125, 1207
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	46, 77, 358, 717, 776
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	238, 649
Hpy188III	TCNNGA	8 cut(s)	86, 385, 458, 551, 674, 721, 1136, 1210
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	150
HpyAV	CCTTC	5 cut(s)	562, 646, 822, 1029, 1144
HpyCH4III	ACNGT	4 cut(s)	18, 272, 427, 1000
HpyCH4IV	ACGT	2 cut(s)	1052, 1168
HpyCH4V	TGCA	5 cut(s)	395, 450, 734, 772, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 1103
HpyF3I	CTNAG	2 cut(s)	906, 987
HpySE526I	ACGT	2 cut(s)	1052, 1168
Hsp92II	CATG	4 cut(s)	554, 1120, 1125, 1207
HspAI	GCGC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
LmnI	GCTCC	2 cut(s)	641, 1200
Lsp1109I	GCAGC	3 cut(s)	186, 1109, 1248
LweI	GCATC	4 cut(s)	202, 583, 653, 1059
MabI	ACCWGGT	1 cut(s)	801
MaeI	CTAG	3 cut(s)	162, 321, 458
MaeII	ACGT	2 cut(s)	1052, 1168
MaeIII	GTNAC	6 cut(s)	555, 854, 878, 901, 913, 931
MalI	GATC	7 cut(s)	187, 549, 600, 705, 874, 1029, 1182
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	5 cut(s)	510, 668, 843, 1091, 1131
MmeI	TCCRAC	1 cut(s)	619
MroXI	GAANNNNTTC	2 cut(s)	669, 1154
MseI	TTAA	1 cut(s)	1020
MspA1I	CMGCKG	2 cut(s)	199, 1178
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	803
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	440, 1103
NcoI	CCATGG	1 cut(s)	1121
NdeII	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
NlaIII	CATG	4 cut(s)	554, 1120, 1125, 1207
NlaIV	GGNNCC	1 cut(s)	959
NmuCI	GTSAC	1 cut(s)	854
NspI	RCATGY	1 cut(s)	1120
NspV	TTCGAA	1 cut(s)	356
PagI	TCATGA	1 cut(s)	550
PdmI	GAANNNNTTC	2 cut(s)	669, 1154
PfeI	GAWTC	5 cut(s)	46, 77, 358, 717, 776
Pfl23II	CGTACG	1 cut(s)	1053
PflFI	GACNNNGTC	1 cut(s)	803
PkrI	GCNGC	4 cut(s)	198, 201, 1099, 1238
Ppu21I	YACGTR	1 cut(s)	1169
Psp6I	CCWGG	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	801
PspLI	CGTACG	1 cut(s)	1053
PspN4I	GGNNCC	1 cut(s)	959
PspPI	GGNCC	2 cut(s)	799, 805
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	6 cut(s)	319, 532, 616, 712, 1055, 1171
RsaNI	GTAC	6 cut(s)	318, 531, 615, 711, 1054, 1170
SaqAI	TTAA	1 cut(s)	1020
SatI	GCNGC	4 cut(s)	197, 200, 1098, 1237
Sau3AI	GATC	7 cut(s)	185, 547, 598, 703, 872, 1027, 1180
Sau96I	GGNCC	2 cut(s)	799, 805
ScaI	AGTACT	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	803
SexAI	ACCWGGT	1 cut(s)	801
SfaNI	GCATC	4 cut(s)	202, 583, 653, 1059
SfcI	CTRYAG	2 cut(s)	189, 660
SfuI	TTCGAA	1 cut(s)	356
SinI	GGWCC	2 cut(s)	799, 805
SmlI	CTYRAG	2 cut(s)	383, 1184
SmoI	CTYRAG	2 cut(s)	383, 1184
SpeI	ACTAGT	2 cut(s)	161, 320
Sse9I	AATT	5 cut(s)	510, 668, 843, 1091, 1131
SsiI	CCGC	6 cut(s)	197, 244, 261, 434, 443, 596
SspMI	CTAG	3 cut(s)	162, 321, 458
StyD4I	CCNGG	1 cut(s)	801
StyI	CCWWGG	1 cut(s)	1121
TaaI	ACNGT	4 cut(s)	18, 272, 427, 1000
TaiI	ACGT	2 cut(s)	1055, 1171
TaqI	TCGA	5 cut(s)	20, 44, 75, 356, 849
TasI	AATT	5 cut(s)	510, 668, 843, 1091, 1131
TatI	WGTACW	2 cut(s)	317, 530
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	5 cut(s)	46, 77, 358, 717, 776
Tru1I	TTAA	1 cut(s)	1020
Tru9I	TTAA	1 cut(s)	1020
TscAI	CASTG	2 cut(s)	402, 1005
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	3 cut(s)	199, 1097, 1236
Tsp45I	GTSAC	1 cut(s)	854
TspRI	CASTG	2 cut(s)	402, 1005
Tth111I	GACNNNGTC	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	799, 805
XapI	RAATTY	3 cut(s)	668, 1091, 1131
XbaI	TCTAGA	1 cut(s)	457
XceI	RCATGY	1 cut(s)	1120
XmnI	GAANNNNTTC	2 cut(s)	669, 1154
XspI	CTAG	3 cut(s)	162, 321, 458
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.