Prupe.3G192500_v2.0.a1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006467
Physical Location & Seq
Forward (+)
20462391 .. 20466815
4425 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G192500.2

Sequence Viewer

Length: 1077 bp
ATGGAGTTCGATAGGTTAGAAGTAGATAATTGTGTTAGGTGTAATGGTGGTAGTGGGAACATGAAATTGTTGGTTTGTACTGAGATGGGTTGCCCAATTGCTCTGCATGTGGAGTGTATGTGTGCTAAACCTGTGTTTGATGAAATGGGCAATTTTTACTGTCCTTATTGTGCATATAAGCTGAAGTTTGTGCGGACTCAGAAGCTGAGGAGAAAGGCAATGACTTCCAAGAGAGTCCTGTCCAAGTTTATTGATGCCGGAGAGGGAAATGGTTGCGGCTATGGTGATGGGCAGGGTGGTGGTGAAGTTCGGGATCAGACTCTGGGGATTGAAGGAGGTGAACCCGAGCAAGGGGACAATGAGCCGAGGAGGGAGATTGAAAATGTAGGAGGTGGAGAAAGAATAGATGAGGACCAGCAGGAGGGGGAAGTTGTTGAAGAGACACCTGAAGTGGATGCAGAGCCTGAGAATGCTTGTTATGTACAAGAAAAGACAAATAAGGACCACGGACATGATGGATTAGACCAAGGAGATGAGGAAGGTATAAGGGTGTCTAAGGAGAATGAAGACAAAAGTGACGATGAAGAACAAAGGCAACCAGAAGCAAACGAGGTACCTGCAAATGGCACTGTTGTGTCCGAATCTGAGGAGTTAGATACTGGGTCTCCTCTAGTGCGGAAGAAGCGTTTCAAGAGAAAAGCTCAAAAGGCAGAACAGCCTCAGAATTTAGCTTCATTAAGGACAGTGCCTTCTCCATCAAGGGAATCATCCTCTTGTCAAACAAGTTTTGTGGAGGATTCCAAAAAGCAAAATGAGAAAGCTAAAACCTTTTCCAAGAAGGAAATAGAAGATCACGAATTTGCAAGAAACTTGGTACTTCCCAATGGGAAGCGCAAGAAATTAAACTGGACAGGCGAAGAGGTAGAAATGTTAAAGGAGGGAGTGAGAATTTATAAAGCAAAAGGCAAAAAGATCCCCTGGACGCAAATTTTGGAATTTGGTCATAACGTATTTCACATAACCCGTCTTCCAGCCGATCTTAAGGATAAATGGAGGAACTTGATTGGGCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

359

Amino Acids

40.36

Weight (kDa)

5.35

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 625
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 3 cut(s) 193, 276, 676
AclWI GGATC 2 cut(s) 321, 967
AcsI RAATTY 5 cut(s) 724, 857, 948, 987, 995
AcuI CTGAAG 2 cut(s) 203, 468
AfaI GTAC 4 cut(s) 79, 483, 615, 876
AfiI CCNNNNNNNGG 4 cut(s) 350, 351, 421, 623
AflII CTTAAG 1 cut(s) 1040
AgsI TTSAA 4 cut(s) 332, 380, 437, 691
AjnI CCWGG 1 cut(s) 977
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 5 cut(s) 181, 205, 701, 731, 821
AluI AGCT 5 cut(s) 181, 205, 701, 731, 821
Alw26I GTCTC 2 cut(s) 434, 669
AlwI GGATC 2 cut(s) 321, 967
AlwNI CAGNNNCTG 3 cut(s) 205, 322, 464
Ama87I CYCGRG 1 cut(s) 344
ApoI RAATTY 5 cut(s) 724, 857, 948, 987, 995
ArsI GACNNNNNNTTYG 2 cut(s) 973, 1005
Asp700I GAANNNNTTC 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 613
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 2 cut(s) 412, 502
AsuHPI GGTGA 3 cut(s) 296, 314, 350
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 2 cut(s) 412, 502
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 573, 1019
BbvCI CCTCAGC 1 cut(s) 206
BccI CCATC 4 cut(s) 79, 281, 509, 763
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 1 cut(s) 979
BcoDI GTCTC 2 cut(s) 434, 669
BfaI CTAG 1 cut(s) 671
BfrI CTTAAG 1 cut(s) 1040
BfuAI ACCTGC 1 cut(s) 625
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 979
Bme18I GGWCC 2 cut(s) 412, 502
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 412, 502
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 979
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 2 cut(s) 244, 445
BmuI ACTGGG 1 cut(s) 669
BpiI GAAGAC 2 cut(s) 573, 1019
BplI GAGNNNNNCTC 2 cut(s) 685, 717
Bpu10I CCTNAGC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 669
BsaJI CCNNGG 4 cut(s) 365, 505, 526, 977
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 649, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 350, 351, 421, 623
Bse1I ACTGG 2 cut(s) 664, 911
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 979
BseDI CCNNGG 4 cut(s) 365, 505, 526, 977
BseGI GGATG 2 cut(s) 460, 767
BseLI CCNNNNNNNGG 4 cut(s) 350, 351, 421, 623
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 6 cut(s) 72, 197, 212, 456, 636, 734
BseNI ACTGG 2 cut(s) 664, 911
BseRI GAGGAG 4 cut(s) 223, 382, 657, 662
BshNI GGYRCC 1 cut(s) 613
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 4 cut(s) 350, 351, 421, 623
BsmAI GTCTC 2 cut(s) 434, 669
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 475
Bso31I GGTCTC 1 cut(s) 669
BsoBI CYCGRG 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 4 cut(s) 313, 850, 972, 1036
BspACI CCGC 3 cut(s) 193, 276, 676
BspCNI CTCAG 6 cut(s) 73, 198, 211, 457, 637, 733
BspLI GGNNCC 1 cut(s) 615
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 2 cut(s) 321, 967
BspT107I GGYRCC 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 1040
BspTNI GGTCTC 1 cut(s) 669
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 2 cut(s) 664, 911
BssECI CCNNGG 4 cut(s) 365, 505, 526, 977
BssMI GATC 4 cut(s) 313, 850, 972, 1036
BssT1I CCWWGG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 979
Bst4CI ACNGT 3 cut(s) 161, 631, 745
Bst6I CTCTTC 2 cut(s) 432, 912
BstAFI CTTAAG 1 cut(s) 1040
BstAUI TGTACA 1 cut(s) 481
BstDEI CTNAG 7 cut(s) 81, 198, 206, 465, 555, 645, 720
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 2 cut(s) 460, 767
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 4 cut(s) 316, 853, 975, 1039
BstMAI GTCTC 2 cut(s) 434, 669
BstMBI GATC 4 cut(s) 313, 850, 972, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 682, 707
BstNI CCWGG 1 cut(s) 979
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 977
BstV2I GAAGAC 2 cut(s) 573, 1019
BstX2I RGATCY 1 cut(s) 972
BstYI RGATCY 1 cut(s) 972
BtgI CCRYGG 1 cut(s) 505
BtsCI GGATG 2 cut(s) 460, 767
BtsIMutI CAGTG 2 cut(s) 627, 750
BveI ACCTGC 1 cut(s) 625
CaiI CAGNNNCTG 3 cut(s) 205, 322, 464
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 2 cut(s) 412, 502
CseI GACGC 1 cut(s) 991
Csp6I GTAC 4 cut(s) 78, 482, 614, 875
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 3 cut(s) 61, 107, 512
CviQI GTAC 4 cut(s) 78, 482, 614, 875
DdeI CTNAG 7 cut(s) 81, 198, 206, 465, 555, 645, 720
DpnI GATC 4 cut(s) 315, 852, 974, 1038
DpnII GATC 4 cut(s) 313, 850, 972, 1036
Eam1104I CTCTTC 2 cut(s) 432, 912
EarI CTCTTC 2 cut(s) 432, 912
Eco130I CCWWGG 1 cut(s) 526
Eco31I GGTCTC 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 412, 502
Eco57I CTGAAG 2 cut(s) 203, 468
Eco88I CYCGRG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 977
EcoT14I CCWWGG 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 3 cut(s) 64, 110, 515
FaqI GGGAC 1 cut(s) 368
FatI CATG 3 cut(s) 60, 106, 511
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 2 cut(s) 467, 754
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 1 cut(s) 671
GlaI GCGC 1 cut(s) 893
GluI GCNGC 1 cut(s) 277
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 991
HhaI GCGC 1 cut(s) 894
Hin1II CATG 3 cut(s) 64, 110, 515
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HinfI GANTC 6 cut(s) 196, 234, 319, 641, 764, 797
HpaII CCGG 1 cut(s) 258
HphI GGTGA 3 cut(s) 296, 314, 350
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 5 cut(s) 201, 318, 640, 646, 723
Hpy188III TCNNGA 3 cut(s) 311, 691, 854
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 5 cut(s) 326, 533, 759, 832, 1065
HpyCH4III ACNGT 3 cut(s) 161, 631, 745
HpyCH4IV ACGT 1 cut(s) 1008
HpyCH4V TGCA 5 cut(s) 106, 173, 458, 620, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 682, 707
HpyF3I CTNAG 7 cut(s) 81, 198, 206, 465, 555, 645, 720
HpySE526I ACGT 1 cut(s) 1008
Hsp92II CATG 3 cut(s) 64, 110, 515
HspAI GCGC 1 cut(s) 892
KpnI GGTACC 1 cut(s) 617
Kzo9I GATC 4 cut(s) 313, 850, 972, 1036
LweI GCATC 2 cut(s) 244, 445
MaeI CTAG 1 cut(s) 671
MaeII ACGT 1 cut(s) 1008
MaeIII GTNAC 1 cut(s) 575
MalI GATC 4 cut(s) 315, 852, 974, 1038
MboI GATC 4 cut(s) 313, 850, 972, 1036
MboII GAAGA 7 cut(s) 449, 578, 596, 691, 860, 929, 1019
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 972
MlyI GAGTC 3 cut(s) 190, 243, 313
MroXI GAANNNNTTC 1 cut(s) 686
MseI TTAA 4 cut(s) 737, 902, 932, 1041
MslI CAYNNNNRTG 2 cut(s) 510, 632
MspCI CTTAAG 1 cut(s) 1040
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 979
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 979
MwoI GCNNNNNNNGC 2 cut(s) 682, 707
NdeII GATC 4 cut(s) 313, 850, 972, 1036
NlaIII CATG 3 cut(s) 64, 110, 515
NlaIV GGNNCC 1 cut(s) 615
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 632
PctI GAATGC 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 3 cut(s) 641, 764, 797
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 3 cut(s) 190, 242, 313
PpsI GAGTC 3 cut(s) 190, 242, 313
PsiI TTATAA 1 cut(s) 954
Psp6I CCWGG 1 cut(s) 977
PspGI CCWGG 1 cut(s) 977
PspN4I GGNNCC 1 cut(s) 615
PspPI GGNCC 2 cut(s) 412, 502
PstNI CAGNNNCTG 3 cut(s) 205, 322, 464
PsuI RGATCY 1 cut(s) 972
RsaI GTAC 4 cut(s) 79, 483, 615, 876
RsaNI GTAC 4 cut(s) 78, 482, 614, 875
RseI CAYNNNNRTG 2 cut(s) 510, 632
SaqAI TTAA 4 cut(s) 737, 902, 932, 1041
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 4 cut(s) 313, 850, 972, 1036
Sau96I GGNCC 2 cut(s) 412, 502
SchI GAGTC 3 cut(s) 190, 243, 313
ScrFI CCNGG 1 cut(s) 979
SfaNI GCATC 2 cut(s) 244, 445
SinI GGWCC 2 cut(s) 412, 502
SmiMI CAYNNNNRTG 2 cut(s) 510, 632
SmlI CTYRAG 1 cut(s) 1040
SmoI CTYRAG 1 cut(s) 1040
SsiI CCGC 3 cut(s) 193, 276, 676
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 1 cut(s) 977
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 3 cut(s) 161, 631, 745
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 1 cut(s) 9
TatI WGTACW 2 cut(s) 77, 481
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 3 cut(s) 641, 764, 797
Tru1I TTAA 4 cut(s) 737, 902, 932, 1041
Tru9I TTAA 4 cut(s) 737, 902, 932, 1041
TscAI CASTG 2 cut(s) 634, 750
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 5 cut(s) 77, 156, 579, 597, 723
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 634, 750
Vha464I CTTAAG 1 cut(s) 1040
VpaK11BI GGWCC 2 cut(s) 412, 502
XapI RAATTY 5 cut(s) 724, 857, 948, 987, 995
XceI RCATGY 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.