Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Forward (+)

73357678 .. 73360894

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG523200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGAGCCCTAATTCAAATAGAGAAACAATGTTAGATGAAGAAGACTCCATGGAATTAGATAGCGTAGTAGTAGAGAAATGCCTTAGGTGTAGCGGCGATTGTGCTAGGGGAAAATTGCTAGTGTGCAGTGTGATTGGGTGCCCGATTTCTGTTCATGAGGAGTGTATGTGTTGTAAGCCTGAAATTGATGAGAAGGGAAGGTTCTACTGCCCTTACTGTGCTTACAAGAGAGCGTTGGTGCGGGAAGAGAAGCTGAGGAGGAAGGCAATGCAGGCTAAGGAGGTTCTGTCCATGTTTATCGATAGCGGTAGGGTTAATTTTTTGGTGAATGATGGAGAGGGGAGTAGTGGCAACGGGGGAGGTGAAGGCACAGCAGCAGGCATTGGGGCGGTTCGGGATGAGGTGACGGTAGGCAGAGGGATGGATGGTGGCGAAACTGAGGATCGGTCTATGGAAGTAGATGAAAATGGACACGGGGAAATGGATGAGAATGTGAGTAAGGGAAATTCGGACCAACAATGTGTGTCGGAGAGGCGTGAGTTTGATAAGAGAAATGAAGATGATGCAGTTGATGGAATTGACCGAGGAGATGGGGATAGTATAAGGGGGAATGAGGAGAATGAAGGCAAAAGTCCGGGAGAAGAACTGATGCGACCAGAGGCAATGGAGGTGCCTGGAGATGACACTGTTGTGCCTGAATCTGGTGATTTCCAGAGTGGTTCTCCTCTATTGCGTAAGAGGCGTTATAAACAAAGAGCTCAAAAGATAGTGCAGCTTCCGTATGCCGTTCCAGTAATGATAGTGCCTTCTCCATCAACAAAATCATCCTCTTGCCAAACTGATGCTGTAGAGGAGGATGCCGAGAAGCAAAGTGAGAAAGATGCTACCTCCTATTCCTCCGAGTCTAGAAAAGTTTCAGAATCAGACCAAAATGTGGAAGGTACTATCTCCTCCAAGTCAAGAGACATTCCAGAGTCAAACCCAAATCAGAAAGCTACTACCTCCTCCAAGTCCAGAAAAAGTCCAGAGTCGAACCAAAATGGGAAAGTTACTACATCCTGCTTTGAGTCAAGAAAAGTTCCAGAATCAAACCAAAATGAGAAAGCTACCACCTCCGTGTCCTCTGCGTCAAGAGAAATTCCAGAGCCAAACCAAAATGAGAAAGCTACTACCGCTTTCTCCAAGTCAAGAAAAGATACAGACTCGAACCACAATGGGAAAACTACTACCTCCTCCACTGAACCAATAAAAGTTCCGGAATCTGAAAGTGAAGAATTGTTATTTCATAATGCCAAGCGGAGGAAAATTAAGTGGACAGCTGAAGAGTTAAAAATGTTAAAGGATGGGGTACGACTATTTTCAGCCCAAGTAAACAAAAATCTTCCCTGGAGGAAAATTTTGGAACTTGAGAAGCATCTAACAAAAAACAAAATCACTTGGACTCCAAGTAAAAAGGAGGCAAGCATTGTTATGAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

493

Amino Acids

54.52

Weight (kDa)

5.29

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
AccB1I	GGYRCC	2 cut(s)	138, 670
AccB7I	CCANNNNNTGG	1 cut(s)	934
AccIII	TCCGGA	1 cut(s)	1255
AciI	CCGC	6 cut(s)	93, 241, 306, 389, 1173, 1297
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	505, 1137, 1395
AcuI	CTGAAG	1 cut(s)	1341
AfaI	GTAC	2 cut(s)	943, 1350
AfiI	CCNNNNNNNGG	3 cut(s)	701, 934, 1299
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	673, 1385
AleI	CACNNNNGTG	2 cut(s)	689, 1115
AluBI	AGCT	8 cut(s)	253, 758, 775, 995, 1106, 1166, 1319, 1477
AluI	AGCT	8 cut(s)	253, 758, 775, 995, 1106, 1166, 1319, 1477
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	1 cut(s)	957
AlwI	GGATC	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	1255
ApeKI	GCWGC	2 cut(s)	374, 772
ApoI	RAATTY	3 cut(s)	505, 1137, 1395
Asp700I	GAANNNNTTC	1 cut(s)	913
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	4 cut(s)	337, 374, 415, 716
AvaII	GGWCC	1 cut(s)	511
AxyI	CCTNAGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	138, 670
BanII	GRGCYC	2 cut(s)	8, 760
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	760
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	386, 784
BccI	CCATC	7 cut(s)	326, 415, 419, 566, 584, 820, 1337
BceAI	ACGGC	1 cut(s)	770
BciT130I	CCWGG	2 cut(s)	675, 1387
BcnI	CCSGG	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	957
BfaI	CTAG	3 cut(s)	105, 119, 906
BfmI	CTRYAG	2 cut(s)	846, 1478
BisI	GCNGC	3 cut(s)	94, 375, 773
BlsI	GCNGC	3 cut(s)	95, 376, 774
Bme1390I	CCNGG	3 cut(s)	636, 675, 1387
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	2 cut(s)	140, 672
BmrFI	CCNGG	3 cut(s)	636, 675, 1387
BmsI	GCATC	6 cut(s)	553, 639, 832, 847, 871, 1423
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpmI	CTGGAG	2 cut(s)	696, 1408
Bpu10I	CCTNAGC	2 cut(s)	254, 276
BpuEI	CTTGAG	1 cut(s)	1427
BpuMI	CCSGG	1 cut(s)	636
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	48, 583, 1385
BsaWI	WCCGGW	1 cut(s)	1255
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 182, 272, 302, 1426, 1456
Bsc4I	CCNNNNNNNGG	3 cut(s)	701, 934, 1299
Bse1I	ACTGG	1 cut(s)	791
Bse21I	CCTNAGG	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	273, 669
BseAI	TCCGGA	1 cut(s)	1255
BseBI	CCWGG	2 cut(s)	675, 1387
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	48, 583, 1385
BseGI	GGATG	8 cut(s)	403, 426, 430, 490, 824, 862, 1055, 1348
BseLI	CCNNNNNNNGG	3 cut(s)	701, 934, 1299
BseMI	GCAATG	2 cut(s)	273, 669
BseMII	CTCAG	2 cut(s)	245, 429
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	9 cut(s)	173, 271, 600, 629, 714, 866, 940, 994, 1222
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	386, 784
BsgI	GTGCAG	2 cut(s)	145, 791
BshNI	GGYRCC	2 cut(s)	138, 670
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	2 cut(s)	635, 1256
BslI	CCNNNNNNNGG	3 cut(s)	701, 934, 1299
BsmAI	GTCTC	1 cut(s)	957
Bsp1286I	GDGCHC	3 cut(s)	8, 143, 760
Bsp13I	TCCGGA	1 cut(s)	1255
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	6 cut(s)	93, 241, 306, 389, 1173, 1297
BspCNI	CTCAG	2 cut(s)	246, 430
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	1255
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	140, 672
BspPI	GGATC	1 cut(s)	450
BspT107I	GGYRCC	2 cut(s)	138, 670
BsrDI	GCAATG	2 cut(s)	273, 669
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	3 cut(s)	48, 583, 1385
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	675, 1387
Bst4CI	ACNGT	3 cut(s)	218, 409, 688
Bst6I	CTCTTC	2 cut(s)	240, 1317
BstC8I	GCNNGC	3 cut(s)	273, 379, 1462
BstDEI	CTNAG	4 cut(s)	83, 254, 276, 438
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	8 cut(s)	403, 426, 430, 490, 824, 862, 1055, 1348
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	957
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 739, 1172
BstNI	CCWGG	2 cut(s)	675, 1387
BstSCI	CCNGG	3 cut(s)	634, 673, 1385
BstSFI	CTRYAG	2 cut(s)	846, 1478
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	386, 784
BstV2I	GAAGAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	8 cut(s)	403, 426, 430, 490, 824, 862, 1055, 1348
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	3 cut(s)	133, 684, 1236
Cac8I	GCNNGC	3 cut(s)	273, 379, 1462
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	1 cut(s)	1116
Csp6I	GTAC	2 cut(s)	942, 1349
CviAII	CATG	3 cut(s)	49, 155, 292
CviQI	GTAC	2 cut(s)	942, 1349
DdeI	CTNAG	4 cut(s)	83, 254, 276, 438
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	240, 1317
EarI	CTCTTC	2 cut(s)	240, 1317
Ecl136II	GAGCTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	8, 760
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	1341
Eco81I	CCTNAGG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	758
EcoRII	CCWGG	2 cut(s)	673, 1385
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	8, 760
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	52, 158, 295
FatI	CATG	3 cut(s)	48, 154, 291
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	94, 375, 773
FokI	GGATG	8 cut(s)	410, 433, 437, 497, 811, 869, 1042, 1355
FriOI	GRGCYC	2 cut(s)	8, 760
Fsp4HI	GCNGC	3 cut(s)	94, 375, 773
FspBI	CTAG	3 cut(s)	105, 119, 906
GluI	GCNGC	3 cut(s)	94, 375, 773
GsuI	CTGGAG	2 cut(s)	696, 1408
HapII	CCGG	2 cut(s)	635, 1256
HgaI	GACGC	1 cut(s)	1116
Hin1II	CATG	3 cut(s)	52, 158, 295
HpaII	CCGG	2 cut(s)	635, 1256
HphI	GGTGA	4 cut(s)	337, 374, 415, 716
Hpy166II	GTNNAC	2 cut(s)	1314, 1372
Hpy188I	TCNGA	7 cut(s)	511, 529, 901, 919, 925, 990, 1264
Hpy8I	GTNNAC	2 cut(s)	1314, 1372
HpyAV	CCTTC	7 cut(s)	187, 192, 256, 359, 617, 816, 932
HpyCH4III	ACNGT	3 cut(s)	218, 409, 688
HpyCH4V	TGCA	4 cut(s)	126, 271, 566, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 739, 1172
HpyF3I	CTNAG	4 cut(s)	83, 254, 276, 438
Hsp92II	CATG	3 cut(s)	52, 158, 295
Kpn2I	TCCGGA	1 cut(s)	1255
Kzo9I	GATC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	386, 784
LweI	GCATC	6 cut(s)	553, 639, 832, 847, 871, 1423
MaeI	CTAG	3 cut(s)	105, 119, 906
MaeIII	GTNAC	2 cut(s)	403, 1048
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	8 cut(s)	50, 53, 257, 569, 653, 1283, 1334, 1373
MhlI	GDGCHC	3 cut(s)	8, 143, 760
MlyI	GAGTC	7 cut(s)	38, 911, 983, 1037, 1076, 1196, 1435
MmeI	TCCRAC	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	1255
MroXI	GAANNNNTTC	1 cut(s)	913
MseI	TTAA	4 cut(s)	315, 1308, 1328, 1337
MslI	CAYNNNNRTG	3 cut(s)	689, 1115, 1469
MspA1I	CMGCKG	1 cut(s)	1319
MspI	CCGG	2 cut(s)	635, 1256
MspR9I	CCNGG	3 cut(s)	636, 675, 1387
MvaI	CCWGG	2 cut(s)	675, 1387
MwoI	GCNNNNNNNGC	3 cut(s)	272, 739, 1172
NciI	CCSGG	1 cut(s)	636
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	52, 158, 295
NlaIV	GGNNCC	2 cut(s)	140, 672
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	403
OliI	CACNNNNGTG	2 cut(s)	689, 1115
PagI	TCATGA	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	913
PfeI	GAWTC	4 cut(s)	698, 920, 1085, 1259
PflMI	CCANNNNNTGG	1 cut(s)	934
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	3 cut(s)	95, 376, 774
PleI	GAGTC	7 cut(s)	38, 910, 982, 1036, 1075, 1196, 1435
PpsI	GAGTC	7 cut(s)	38, 910, 982, 1036, 1075, 1196, 1435
PsiI	TTATAA	1 cut(s)	747
Psp124BI	GAGCTC	1 cut(s)	760
Psp6I	CCWGG	2 cut(s)	673, 1385
PspGI	CCWGG	2 cut(s)	673, 1385
PspN4I	GGNNCC	2 cut(s)	140, 672
PspPI	GGNCC	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	1319
RsaI	GTAC	2 cut(s)	943, 1350
RsaNI	GTAC	2 cut(s)	942, 1349
RseI	CAYNNNNRTG	3 cut(s)	689, 1115, 1469
SacI	GAGCTC	1 cut(s)	760
SaqAI	TTAA	4 cut(s)	315, 1308, 1328, 1337
SatI	GCNGC	3 cut(s)	94, 375, 773
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	7 cut(s)	38, 911, 983, 1037, 1076, 1196, 1435
ScrFI	CCNGG	3 cut(s)	636, 675, 1387
SduI	GDGCHC	3 cut(s)	8, 143, 760
SfaNI	GCATC	6 cut(s)	553, 639, 832, 847, 871, 1423
SfcI	CTRYAG	2 cut(s)	846, 1478
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	3 cut(s)	689, 1115, 1469
SmlI	CTYRAG	1 cut(s)	1406
SmoI	CTYRAG	1 cut(s)	1406
SsiI	CCGC	6 cut(s)	93, 241, 306, 389, 1173, 1297
SspMI	CTAG	3 cut(s)	105, 119, 906
SstI	GAGCTC	1 cut(s)	760
StyD4I	CCNGG	3 cut(s)	634, 673, 1385
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	3 cut(s)	218, 409, 688
TaqI	TCGA	3 cut(s)	300, 1031, 1205
TaqII	GACCGA	2 cut(s)	435, 597
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	698, 920, 1085, 1259
Tru1I	TTAA	4 cut(s)	315, 1308, 1328, 1337
Tru9I	TTAA	4 cut(s)	315, 1308, 1328, 1337
TscAI	CASTG	3 cut(s)	133, 691, 1243
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	374, 772
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	6 cut(s)	51, 143, 477, 570, 636, 1274
TspGWI	ACGGA	2 cut(s)	768, 1105
TspRI	CASTG	3 cut(s)	133, 691, 1243
Van91I	CCANNNNNTGG	1 cut(s)	934
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	3 cut(s)	505, 1137, 1395
XbaI	TCTAGA	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	913
XspI	CTAG	3 cut(s)	105, 119, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.