Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Forward (+)

31746809 .. 31750699

Gene Structure 3891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40210.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTCAGATGAAGAAGACTCCATGGAATTAGATAGGTTCGTAGTCGAGAAATGCCTCAGGTGCGGCGGCGACGGTGCCAGTATGAAATTGCTGGTGTGTAGTGTGATTGGGTGCCTGATTGCTATCCACGAGGAGTGTACGTCTTCCCAGCCTGAAATTGATGAGACTGGAAAGTTCTACTGCCCTTACTGCGCTCACAAGAGAGCGCTGGTGAGGACAGAGAAGCTGAGGAGGAAGGCGCTGCGGGCCAAGGAGGTTCTGTCCATGTTTATTATGAGCCGTGAAGTTAGTATTTTGGGGAATGGTGGAGATGAAGGTGCGGTGCGGAATGTAGGAGAAATTGAAGGCATTGGGATGGAAGCAGATGAGCATGTAAGTAAGGGGAATTCCGAAGAGCAATGTGTGTTGGAGAGACATGAGTGTGATAAGAGGATTGAGGATAATGCAGGTGATGGAATTAATCAACGAGATGGAGATAGTGCAAGGGGGAATGAAGGGAAGAGTCCGGGAGAAGAACAGATGCGACCGGAGGTAATGGAGGTGCCTGAATCAGGTGATTTCCAGGGCGGTTCTCCTGTGTTGCGAAAGAAGCATTATAAGAAAAGAGCTCAGAGAGTGCAGGTTCAGCGTGTGATTCCGTTGAGGATAGTGTCTTCTCCATTGAGAAAATCATCCTCTTGCCAGACTGAAGCTGTGGAGGAGGATGGCGAGAAGCCAAGTGAGAAAGACACTAGCTCCTCTGCCTCCGAGTCTAGAAAAGTTTCGGAATTGGACCATAATAATGAGAAAGGTAATGACTCCGTCAAGTTGAGTGACATTCCAGAGTTGGACCAAAATATTAAGGCTGCTACTTCCTCCGAGTTCAGAAGAAGTCCAGAGTCGAACCAAAATGAGAAAGTTACTACCTCCTGCTTTGATTTAAACAAAGTTCCAGAATTAGACCATAATGAGAAAGCTACTATCAACTTGTCTTCTGAGTCGAGAGAAATTCCAGAGCCAAGCCAAAATGAGAAAGCTACTGAGGTCCTCTCCAAGTCAAGAAAAGTTCCAGATTCTAACCAAAATGAGAAAACTACCTCCTCCACTGAGCCAATAAAAGTTCCTGAATCTGGAAGGCGGAGGAGATTTAACTGGACAGCTGATGAGTTGAAAATGTTAAAGGAGGGAGTACAATTATTTTCTGCCCGAGTAAACAAAAATATTCCTTGGAGGAAAATTTTTGACCATGGTAGTCATGTTTTTCATAAGACTCGGACTCCAGATAATCTTAAGGATAAGTGGAAGGTCCTGTGCAGAGAAGCCTCTGACAAAAAACAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

441

Amino Acids

49.42

Weight (kDa)

5.95

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AarI	CACCTGC	1 cut(s)	437
Acc36I	ACCTGC	2 cut(s)	437, 610
AccB1I	GGYRCC	3 cut(s)	74, 111, 541
AciI	CCGC	7 cut(s)	63, 66, 244, 320, 325, 567, 1117
AcsI	RAATTY	3 cut(s)	385, 987, 1215
AcuI	CTGAAG	1 cut(s)	708
AfaI	GTAC	2 cut(s)	139, 1170
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	551, 1109
AflII	CTTAAG	1 cut(s)	1268
AgsI	TTSAA	2 cut(s)	344, 1150
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	7 cut(s)	226, 608, 692, 735, 956, 1016, 1139
AluI	AGCT	7 cut(s)	226, 608, 692, 735, 956, 1016, 1139
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	158, 406
Ama87I	CYCGRG	1 cut(s)	1185
Aor51HI	AGCGCT	1 cut(s)	207
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	241, 845
ApoI	RAATTY	3 cut(s)	385, 987, 1215
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	760
AspLEI	GCGC	3 cut(s)	194, 208, 241
AspS9I	GGNCC	5 cut(s)	246, 772, 829, 1024, 1285
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	223, 461, 566
AvaI	CYCGRG	1 cut(s)	1185
AvaII	GGWCC	4 cut(s)	772, 829, 1024, 1285
AxyI	CCTNAGG	1 cut(s)	56
BanI	GGYRCC	3 cut(s)	74, 111, 541
BanII	GRGCYC	1 cut(s)	610
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	4 cut(s)	21, 135, 645, 963
Bbv12I	GWGCWC	1 cut(s)	610
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	228, 832
BccI	CCATC	4 cut(s)	349, 446, 464, 698
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	158, 406
BfaI	CTAG	2 cut(s)	732, 753
BfoI	RGCGCY	2 cut(s)	209, 242
BfrI	CTTAAG	1 cut(s)	1268
BfuAI	ACCTGC	2 cut(s)	437, 610
BisI	GCNGC	4 cut(s)	64, 67, 242, 846
BlsI	GCNGC	4 cut(s)	65, 68, 243, 847
Bme1390I	CCNGG	2 cut(s)	507, 563
Bme18I	GGWCC	4 cut(s)	772, 829, 1024, 1285
BmeT110I	CYCGRG	1 cut(s)	1185
BmgT120I	GGNCC	5 cut(s)	246, 772, 829, 1024, 1285
BmiI	GGNNCC	3 cut(s)	76, 113, 543
BmrFI	CCNGG	2 cut(s)	507, 563
BmsI	GCATC	1 cut(s)	510
BpiI	GAAGAC	4 cut(s)	21, 135, 645, 963
BplI	GAGNNNNNCTC	2 cut(s)	1013, 1045
BpmI	CTGGAG	1 cut(s)	1242
Bpu10I	CCTNAGC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	5 cut(s)	21, 249, 562, 1205, 1225
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	8 cut(s)	125, 155, 245, 275, 719, 749, 1240, 1270
Bsc4I	CCNNNNNNNGG	2 cut(s)	551, 1109
Bse1I	ACTGG	3 cut(s)	78, 172, 1136
Bse21I	CCTNAGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	404
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	5 cut(s)	21, 249, 562, 1205, 1225
BseGI	GGATG	3 cut(s)	360, 671, 709
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	551, 1109
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	6 cut(s)	70, 218, 623, 966, 1011, 1077
BseNI	ACTGG	3 cut(s)	78, 172, 1136
BseRI	GAGGAG	6 cut(s)	146, 244, 713, 727, 1069, 1135
BseXI	GCAGC	2 cut(s)	228, 832
BseYI	CCCAGC	1 cut(s)	147
BsgI	GTGCAG	2 cut(s)	638, 1312
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	3 cut(s)	74, 111, 541
BsiEI	CGRYCG	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	1185
BsiSI	CCGG	2 cut(s)	506, 527
BslI	CCNNNNNNNGG	2 cut(s)	551, 1109
BsmAI	GTCTC	2 cut(s)	158, 406
BsnI	GGCC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	1185
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp19I	CCATGG	2 cut(s)	21, 1225
BspACI	CCGC	7 cut(s)	63, 66, 244, 320, 325, 567, 1117
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	6 cut(s)	69, 219, 622, 967, 1012, 1078
BspLI	GGNNCC	3 cut(s)	76, 113, 543
BspMI	ACCTGC	2 cut(s)	437, 610
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	3 cut(s)	74, 111, 541
BspTI	CTTAAG	1 cut(s)	1268
BsrDI	GCAATG	1 cut(s)	404
BsrI	ACTGG	3 cut(s)	78, 172, 1136
BssECI	CCNNGG	5 cut(s)	21, 249, 562, 1205, 1225
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	4 cut(s)	21, 249, 1205, 1225
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	387, 494
BstAFI	CTTAAG	1 cut(s)	1268
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	6 cut(s)	56, 227, 609, 975, 1020, 1086
BstDSI	CCRYGG	2 cut(s)	21, 1225
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	360, 671, 709
BstH2I	RGCGCY	2 cut(s)	209, 242
BstHHI	GCGC	3 cut(s)	194, 208, 241
BstMAI	GTCTC	2 cut(s)	158, 406
BstMCI	CGRYCG	1 cut(s)	527
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 189, 245, 589, 625
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	505, 561
BstV1I	GCAGC	2 cut(s)	228, 832
BstV2I	GAAGAC	4 cut(s)	21, 135, 645, 963
Bsu36I	CCTNAGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	2 cut(s)	21, 1225
BtsCI	GGATG	3 cut(s)	360, 671, 709
BtsIMutI	CAGTG	1 cut(s)	1083
BveI	ACCTGC	2 cut(s)	437, 610
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	3 cut(s)	194, 208, 241
Cfr13I	GGNCC	5 cut(s)	246, 772, 829, 1024, 1285
Csp6I	GTAC	2 cut(s)	138, 1169
CviAII	CATG	6 cut(s)	22, 265, 371, 416, 1226, 1235
CviQI	GTAC	2 cut(s)	138, 1169
DdeI	CTNAG	6 cut(s)	56, 227, 609, 975, 1020, 1086
DraI	TTTAAA	1 cut(s)	921
Eam1104I	CTCTTC	2 cut(s)	387, 494
EarI	CTCTTC	2 cut(s)	387, 494
EciI	GGCGGA	1 cut(s)	1132
Ecl136II	GAGCTC	1 cut(s)	608
Eco130I	CCWWGG	4 cut(s)	21, 249, 1205, 1225
Eco24I	GRGCYC	1 cut(s)	610
Eco47I	GGWCC	4 cut(s)	772, 829, 1024, 1285
Eco47III	AGCGCT	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	608
Eco57I	CTGAAG	1 cut(s)	708
Eco81I	CCTNAGG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	1185
EcoICRI	GAGCTC	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	2 cut(s)	1024, 1285
EcoRI	GAATTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	4 cut(s)	21, 249, 1205, 1225
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	4 cut(s)	21, 249, 1205, 1225
FaeI	CATG	6 cut(s)	25, 268, 374, 419, 1229, 1238
FatI	CATG	6 cut(s)	21, 264, 370, 415, 1225, 1234
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	64, 67, 242, 846
FokI	GGATG	3 cut(s)	367, 658, 716
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	4 cut(s)	64, 67, 242, 846
FspBI	CTAG	2 cut(s)	732, 753
GlaI	GCGC	3 cut(s)	193, 207, 240
GluI	GCNGC	4 cut(s)	64, 67, 242, 846
GsaI	CCCAGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	1242
HaeII	RGCGCY	2 cut(s)	209, 242
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	506, 527
HhaI	GCGC	3 cut(s)	194, 208, 241
Hin1II	CATG	6 cut(s)	25, 268, 374, 419, 1229, 1238
Hin6I	GCGC	3 cut(s)	192, 206, 239
HinP1I	GCGC	3 cut(s)	192, 206, 239
HpaII	CCGG	2 cut(s)	506, 527
HphI	GGTGA	3 cut(s)	223, 461, 566
Hpy166II	GTNNAC	2 cut(s)	138, 1192
Hpy8I	GTNNAC	2 cut(s)	138, 1192
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	6 cut(s)	229, 308, 338, 488, 1107, 1276
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	446, 482, 619, 1293
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 189, 245, 589, 625
HpyF3I	CTNAG	6 cut(s)	56, 227, 609, 975, 1020, 1086
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	6 cut(s)	25, 268, 374, 419, 1229, 1238
HspAI	GCGC	3 cut(s)	192, 206, 239
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	2 cut(s)	228, 832
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	2 cut(s)	732, 753
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	812, 898
MboII	GAAGA	9 cut(s)	23, 26, 135, 404, 511, 524, 645, 879, 963
MhlI	GDGCHC	1 cut(s)	610
MlyI	GAGTC	8 cut(s)	11, 511, 758, 791, 887, 986, 1243, 1249
MmeI	TCCRAC	2 cut(s)	387, 807
MroXI	GAANNNNTTC	1 cut(s)	760
MseI	TTAA	6 cut(s)	459, 840, 920, 1128, 1157, 1269
MslI	CAYNNNNRTG	3 cut(s)	353, 420, 780
MspA1I	CMGCKG	1 cut(s)	1139
MspCI	CTTAAG	1 cut(s)	1268
MspI	CCGG	2 cut(s)	506, 527
MspR9I	CCNGG	2 cut(s)	507, 563
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	5 cut(s)	60, 189, 245, 589, 625
NciI	CCSGG	1 cut(s)	507
NcoI	CCATGG	2 cut(s)	21, 1225
NlaIII	CATG	6 cut(s)	25, 268, 374, 419, 1229, 1238
NlaIV	GGNNCC	3 cut(s)	76, 113, 543
NmuCI	GTSAC	1 cut(s)	812
NspI	RCATGY	1 cut(s)	374
PaqCI	CACCTGC	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	760
PfeI	GAWTC	4 cut(s)	548, 634, 1052, 1106
PflFI	GACNNNGTC	1 cut(s)	800
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	4 cut(s)	65, 68, 243, 847
PleI	GAGTC	8 cut(s)	11, 510, 757, 791, 886, 985, 1243, 1249
PpsI	GAGTC	8 cut(s)	11, 510, 757, 791, 886, 985, 1243, 1249
PpuMI	RGGWCCY	2 cut(s)	1024, 1285
PshBI	ATTAAT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	610
Psp5II	RGGWCCY	2 cut(s)	1024, 1285
Psp6I	CCWGG	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	76, 113, 543
PspPI	GGNCC	5 cut(s)	246, 772, 829, 1024, 1285
PspPPI	RGGWCCY	2 cut(s)	1024, 1285
PsyI	GACNNNGTC	1 cut(s)	800
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	2 cut(s)	139, 1170
RsaNI	GTAC	2 cut(s)	138, 1169
RseI	CAYNNNNRTG	3 cut(s)	353, 420, 780
SacI	GAGCTC	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	6 cut(s)	459, 840, 920, 1128, 1157, 1269
SatI	GCNGC	4 cut(s)	64, 67, 242, 846
Sau96I	GGNCC	5 cut(s)	246, 772, 829, 1024, 1285
SchI	GAGTC	8 cut(s)	11, 511, 758, 791, 887, 986, 1243, 1249
ScrFI	CCNGG	2 cut(s)	507, 563
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	510
SinI	GGWCC	4 cut(s)	772, 829, 1024, 1285
SmiMI	CAYNNNNRTG	3 cut(s)	353, 420, 780
SmlI	CTYRAG	1 cut(s)	1268
SmoI	CTYRAG	1 cut(s)	1268
SsiI	CCGC	7 cut(s)	63, 66, 244, 320, 325, 567, 1117
SspI	AATATT	2 cut(s)	838, 1201
SspMI	CTAG	2 cut(s)	732, 753
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	505, 561
StyI	CCWWGG	4 cut(s)	21, 249, 1205, 1225
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	3 cut(s)	45, 881, 980
TatI	WGTACW	1 cut(s)	1168
TauI	GCSGC	2 cut(s)	66, 69
TfiI	GAWTC	4 cut(s)	548, 634, 1052, 1106
Tru1I	TTAA	6 cut(s)	459, 840, 920, 1128, 1157, 1269
Tru9I	TTAA	6 cut(s)	459, 840, 920, 1128, 1157, 1269
TscAI	CASTG	1 cut(s)	1090
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	2 cut(s)	241, 845
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	5 cut(s)	24, 98, 327, 507, 1232
TspGWI	ACGGA	2 cut(s)	627, 790
TspRI	CASTG	1 cut(s)	1090
Tth111I	GACNNNGTC	1 cut(s)	800
Vha464I	CTTAAG	1 cut(s)	1268
VpaK11BI	GGWCC	4 cut(s)	772, 829, 1024, 1285
VspI	ATTAAT	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	3 cut(s)	385, 987, 1215
XbaI	TCTAGA	1 cut(s)	752
XceI	RCATGY	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	760
XspI	CTAG	2 cut(s)	732, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.