Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Reverse (-)

4113295 .. 4116224

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGAATTGGATGGATTGTTAGAAGTAGAGAATTGTGTTAAGTGTGAAGATGGTGGTTCTGGAAGTAGGAAATTGTTGGTTTGTAGTGAGAAGGGATGCCCAATTGCTCTCCATGAGGAGTGCATGTGTGCAAGGCCTGTTTTTGATCAATTGGGAAAGTTTTACTGCCCGTATTGCGCGTATAAGCGGGAGTTTTTTCGGTGTCGGGAGTTGGGGAGGAAGGTAATGGTGTCCAAGAGTGTGTTGTCTAAGTTTATTGATGCAGGAGAGGGGGAGGATTGTGGGTGTGAGGAGGGCGGGCGGGGTGGTGTTGAGGTTCGGGGTCAGTCTGTGGGAGTAGAAGGAGGTGGAGCTGCAGAAGGGGGAACGGACCAGAGGAGGGAGATTGAAGATGTAAGGGGTGAGGAGAGCATAGATGAGGACCCTGATGAGGAGGAAATTGTTGAAGAGACACAAGAAGAGGATGCAGAGCCAAGAGAAACAATGAATAACGACAATGCACGTGATGGATTAGACCGAAAAGATGAGGAGGATTGTCGAAGGGTGTCAGAGGAGAGCAAGGGAGGAAGTGATGATGAAGAACAAGAAGAGGAGGCAGAGCCCCAGAGTGGTTGTTGTGTACAAGAAATGACGAATAATCACAATGCACATGGATTATTAGACCAAAGAGATGAAGAGGATGGTAAACGGGTTCCTGAGGAGAATGAGGGCGAAAGTGAGGATGAAGAACAAATGCAGTCAGTAGAAAAGGAGGTGCCAGGAAATTCAACTGTTGTGTCTGAATCTGATGAGTTAGATACGGGGTCTCCACTAGTGAGGAAGAAGCGTTTCAAACAGAAGAGTAAAAGGATAAAACAGCCTCAAAATGTAGCTTCCTTAAGGACAGTGCCCTCTCCATCAAGGGAATCATCATCTCGTCAAACAAGGTCTGCAGAGGAGCATGCTAAAAACCAAAATGGGAAAGCTAAAACCTTTTCCAAGAAGGAAAGAGAAAATCAGGAGTCTGCAAGAGACTTGGTACTTCCTAATGTGAAGGGTAAGAGATTAAAATGGACAGATGAAGAGATAAAAATGTTGAAGGAGGGAGTGAGAGTTTGTGGAACATCAAACGGAAAGATGCAGTGGAAGAAAATTTTGGAATATGGTCATAAAGTGTTTCACAGAACCCGTGAACCAGTTGATCTTAAAGATAAATGGAGGAGGAGCTTGGGGAAAGAAAATAAAGACAATGCACATGATGGATTTGACCAAAGAGATGAGGAGGATGGAATAAGGCTGTCTGAAGAGAATGAGGGCGAAGGTGAGGATAAAGAACAGATACGATCAGTAGAAAAGGAGGCGCCTGGAAAGTCCACTGTTGATTCAAAATCTGAAAAGTTAGATACTGGGTCTCCTCTGGTGCGAAGCAAGCAACTCAAACAAAAAGCTAAAACGAAAGAACAGCCTCCAAATGCTAAAACCTTTTCCAAGAGGGAAAGAGAAATTCAGGAGTCTTCAAGAAACTTGGTACTTCCTAACGGGAAGCGGAAGAGATTAGATTGGACAGATGAAGAGTTGAAAATGTTAAAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

525

Amino Acids

59.28

Weight (kDa)

5.03

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	754, 1339
AccII	CGCG	1 cut(s)	179
AciI	CCGC	4 cut(s)	187, 297, 301, 1525
AcsI	RAATTY	3 cut(s)	763, 1131, 1482
AcuI	CTGAAG	1 cut(s)	1302
AcvI	CACGTG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	1340
AfaI	GTAC	3 cut(s)	621, 1020, 1509
AfiI	CCNNNNNNNGG	3 cut(s)	379, 430, 608
AflII	CTTAAG	1 cut(s)	877
AgsI	TTSAA	8 cut(s)	389, 446, 768, 832, 1078, 1365, 1497, 1558
AhlI	ACTAGT	1 cut(s)	811
AjnI	CCWGG	2 cut(s)	757, 1342
AjuI	GAANNNNNNNTTGG	2 cut(s)	1118, 1150
AluBI	AGCT	5 cut(s)	353, 872, 965, 1206, 1427
AluI	AGCT	5 cut(s)	353, 872, 965, 1206, 1427
Alw26I	GTCTC	4 cut(s)	443, 810, 1005, 1395
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	3 cut(s)	763, 1131, 1482
Asp700I	GAANNNNTTC	1 cut(s)	827
AspLEI	GCGC	2 cut(s)	179, 1342
AspS9I	GGNCC	2 cut(s)	370, 421
AsuHPI	GGTGA	2 cut(s)	413, 1313
AvaII	GGWCC	2 cut(s)	370, 421
AxyI	CCTNAGG	1 cut(s)	696
BaeGI	GKGCMC	1 cut(s)	891
BanI	GGYRCC	2 cut(s)	754, 1339
BanII	GRGCYC	1 cut(s)	603
BbrPI	CACGTG	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	1485
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	7 cut(s)	5, 44, 500, 674, 904, 1232, 1259
BciT130I	CCWGG	2 cut(s)	759, 1344
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	4 cut(s)	443, 810, 1005, 1395
BcuI	ACTAGT	1 cut(s)	811
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	2 cut(s)	354, 930
BfoI	RGCGCY	1 cut(s)	1343
BfrI	CTTAAG	1 cut(s)	877
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	759, 1344
Bme18I	GGWCC	2 cut(s)	370, 421
BmgT120I	GGNCC	2 cut(s)	370, 421
BmiI	GGNNCC	4 cut(s)	423, 693, 756, 1341
BmrFI	CCNGG	2 cut(s)	759, 1344
BmrI	ACTGGG	1 cut(s)	1395
BmsI	GCATC	4 cut(s)	86, 250, 454, 1107
BmuI	ACTGGG	1 cut(s)	1395
BpiI	GAAGAC	1 cut(s)	1485
BsaAI	YACGTR	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	1340
BsaI	GGTCTC	2 cut(s)	810, 1395
BsaXI	ACNNNNNCTCC	8 cut(s)	110, 140, 790, 820, 1077, 1107, 1375, 1405
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 430, 608
Bse1I	ACTGG	2 cut(s)	1175, 1390
Bse21I	CCTNAGG	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	759, 1344
BseGI	GGATG	6 cut(s)	16, 101, 469, 685, 727, 1270
BseLI	CCNNNNNNNGG	3 cut(s)	379, 430, 608
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	2 cut(s)	1175, 1390
BseSI	GKGCMC	1 cut(s)	891
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	2 cut(s)	754, 1339
BslI	CCNNNNNNNGG	3 cut(s)	379, 430, 608
BsmAI	GTCTC	4 cut(s)	443, 810, 1005, 1395
BsnI	GGCC	1 cut(s)	136
Bso31I	GGTCTC	2 cut(s)	810, 1395
Bsp1286I	GDGCHC	2 cut(s)	603, 891
Bsp1407I	TGTACA	1 cut(s)	619
Bsp143I	GATC	3 cut(s)	145, 1180, 1322
BspACI	CCGC	4 cut(s)	187, 297, 301, 1525
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	4 cut(s)	423, 693, 756, 1341
BspMAI	CTGCAG	2 cut(s)	358, 934
BspT107I	GGYRCC	2 cut(s)	754, 1339
BspTI	CTTAAG	1 cut(s)	877
BspTNI	GGTCTC	2 cut(s)	810, 1395
BsrGI	TGTACA	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	1175, 1390
BssMI	GATC	3 cut(s)	145, 1180, 1322
BssNI	GRCGYC	1 cut(s)	1340
Bst2UI	CCWGG	2 cut(s)	759, 1344
Bst4CI	ACNGT	3 cut(s)	772, 886, 1357
Bst6I	CTCTTC	9 cut(s)	441, 453, 582, 669, 833, 1056, 1278, 1523, 1545
BstACI	GRCGYC	1 cut(s)	1340
BstAFI	CTTAAG	1 cut(s)	877
BstAUI	TGTACA	1 cut(s)	619
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	299, 942, 1409
BstDEI	CTNAG	2 cut(s)	249, 696
BstF5I	GGATG	6 cut(s)	16, 101, 469, 685, 727, 1270
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	1343
BstHHI	GCGC	2 cut(s)	179, 1342
BstKTI	GATC	3 cut(s)	148, 1183, 1325
BstMAI	GTCTC	4 cut(s)	443, 810, 1005, 1395
BstMBI	GATC	3 cut(s)	145, 1180, 1322
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 1408
BstNI	CCWGG	2 cut(s)	759, 1344
BstNSI	RCATGY	2 cut(s)	127, 944
BstSCI	CCNGG	2 cut(s)	757, 1342
BstSFI	CTRYAG	2 cut(s)	354, 930
BstSLI	GKGCMC	1 cut(s)	891
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	1485
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	6 cut(s)	16, 101, 469, 685, 727, 1270
BtsI	GCAGTG	1 cut(s)	1127
BtsIMutI	CAGTG	3 cut(s)	891, 1127, 1353
Cac8I	GCNNGC	3 cut(s)	299, 942, 1409
CfoI	GCGC	2 cut(s)	179, 1342
Cfr13I	GGNCC	2 cut(s)	370, 421
Csp6I	GTAC	3 cut(s)	620, 1019, 1508
CviAII	CATG	5 cut(s)	113, 124, 650, 941, 1235
CviQI	GTAC	3 cut(s)	620, 1019, 1508
DdeI	CTNAG	2 cut(s)	249, 696
DinI	GGCGCC	1 cut(s)	1341
DpnI	GATC	3 cut(s)	147, 1182, 1324
DpnII	GATC	3 cut(s)	145, 1180, 1322
Eam1104I	CTCTTC	9 cut(s)	441, 453, 582, 669, 833, 1056, 1278, 1523, 1545
EarI	CTCTTC	9 cut(s)	441, 453, 582, 669, 833, 1056, 1278, 1523, 1545
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	2 cut(s)	810, 1395
Eco47I	GGWCC	2 cut(s)	370, 421
Eco57I	CTGAAG	1 cut(s)	1302
Eco72I	CACGTG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	757, 1342
EcoT38I	GRGCYC	1 cut(s)	603
EgeI	GGCGCC	1 cut(s)	1341
EheI	GGCGCC	1 cut(s)	1341
FaeI	CATG	5 cut(s)	116, 127, 653, 944, 1238
FaiI	YATR	9 cut(s)	114, 125, 183, 413, 651, 942, 1143, 1149, 1236
FatI	CATG	5 cut(s)	112, 123, 649, 940, 1234
FauI	CCCGC	3 cut(s)	180, 290, 294
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	6 cut(s)	23, 108, 476, 692, 734, 1277
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	2 cut(s)	178, 1341
GluI	GCNGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	1343
HaeIII	GGCC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	179, 1342
Hin1I	GRCGYC	1 cut(s)	1340
Hin1II	CATG	5 cut(s)	116, 127, 653, 944, 1238
Hin6I	GCGC	2 cut(s)	177, 1340
HinP1I	GCGC	2 cut(s)	177, 1340
HinfI	GANTC	5 cut(s)	782, 905, 1001, 1361, 1490
HphI	GGTGA	2 cut(s)	413, 1313
Hpy166II	GTNNAC	4 cut(s)	620, 686, 1172, 1353
Hpy188I	TCNGA	5 cut(s)	550, 781, 787, 1282, 1372
Hpy188III	TCNNGA	6 cut(s)	60, 206, 695, 998, 1487, 1497
Hpy8I	GTNNAC	4 cut(s)	620, 686, 1172, 1353
HpyAV	CCTTC	9 cut(s)	85, 214, 335, 353, 534, 976, 1027, 1072, 1292
HpyCH4III	ACNGT	3 cut(s)	772, 886, 1357
HpyCH4IV	ACGT	1 cut(s)	502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 1408
HpyF3I	CTNAG	2 cut(s)	249, 696
HpySE526I	ACGT	1 cut(s)	502
Hsp92I	GRCGYC	1 cut(s)	1340
Hsp92II	CATG	5 cut(s)	116, 127, 653, 944, 1238
HspAI	GCGC	2 cut(s)	177, 1340
KasI	GGCGCC	1 cut(s)	1339
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	145, 1180, 1322
LmnI	GCTCC	3 cut(s)	350, 937, 1203
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	4 cut(s)	86, 250, 454, 1107
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	1 cut(s)	502
MalI	GATC	3 cut(s)	147, 1182, 1324
MboI	GATC	3 cut(s)	145, 1180, 1322
MfeI	CAATTG	2 cut(s)	102, 149
MhlI	GDGCHC	2 cut(s)	603, 891
MluCI	AATT	9 cut(s)	5, 31, 71, 102, 149, 438, 763, 1131, 1482
Mly113I	GGCGCC	1 cut(s)	1340
MlyI	GAGTC	2 cut(s)	1010, 1499
MroXI	GAANNNNTTC	1 cut(s)	827
MseI	TTAA	5 cut(s)	39, 878, 1046, 1185, 1565
MspCI	CTTAAG	1 cut(s)	877
MspR9I	CCNGG	2 cut(s)	759, 1344
MunI	CAATTG	2 cut(s)	102, 149
MvaI	CCWGG	2 cut(s)	759, 1344
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	174, 1408
NarI	GGCGCC	1 cut(s)	1340
NdeII	GATC	3 cut(s)	145, 1180, 1322
NlaIII	CATG	5 cut(s)	116, 127, 653, 944, 1238
NlaIV	GGNNCC	4 cut(s)	423, 693, 756, 1341
NspI	RCATGY	2 cut(s)	127, 944
PaeI	GCATGC	1 cut(s)	944
PceI	AGGCCT	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	827
PfeI	GAWTC	3 cut(s)	782, 905, 1361
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	1009, 1498
PluTI	GGCGCC	1 cut(s)	1343
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
PpsI	GAGTC	2 cut(s)	1009, 1498
Ppu21I	YACGTR	1 cut(s)	503
PpuMI	RGGWCCY	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	757, 1342
PspCI	CACGTG	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	757, 1342
PspN4I	GGNNCC	4 cut(s)	423, 693, 756, 1341
PspPI	GGNCC	2 cut(s)	370, 421
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	2 cut(s)	358, 934
RsaI	GTAC	3 cut(s)	621, 1020, 1509
RsaNI	GTAC	3 cut(s)	620, 1019, 1508
SaqAI	TTAA	5 cut(s)	39, 878, 1046, 1185, 1565
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	145, 1180, 1322
Sau96I	GGNCC	2 cut(s)	370, 421
SchI	GAGTC	2 cut(s)	1010, 1499
ScrFI	CCNGG	2 cut(s)	759, 1344
SduI	GDGCHC	2 cut(s)	603, 891
SfaNI	GCATC	4 cut(s)	86, 250, 454, 1107
SfcI	CTRYAG	2 cut(s)	354, 930
SfoI	GGCGCC	1 cut(s)	1341
SinI	GGWCC	2 cut(s)	370, 421
SmlI	CTYRAG	1 cut(s)	877
SmoI	CTYRAG	1 cut(s)	877
SpeI	ACTAGT	1 cut(s)	811
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	9 cut(s)	5, 31, 71, 102, 149, 438, 763, 1131, 1482
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	4 cut(s)	187, 297, 301, 1525
SspDI	GGCGCC	1 cut(s)	1339
SspMI	CTAG	1 cut(s)	812
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	757, 1342
TaaI	ACNGT	3 cut(s)	772, 886, 1357
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	538
TaqII	GACCGA	1 cut(s)	531
TasI	AATT	9 cut(s)	5, 31, 71, 102, 149, 438, 763, 1131, 1482
TatI	WGTACW	1 cut(s)	619
TfiI	GAWTC	3 cut(s)	782, 905, 1361
Tru1I	TTAA	5 cut(s)	39, 878, 1046, 1185, 1565
Tru9I	TTAA	5 cut(s)	39, 878, 1046, 1185, 1565
TscAI	CASTG	3 cut(s)	891, 1127, 1360
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	6 cut(s)	500, 591, 687, 738, 1074, 1563
TspGWI	ACGGA	2 cut(s)	383, 1125
TspRI	CASTG	3 cut(s)	891, 1127, 1360
Vha464I	CTTAAG	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	370, 421
XapI	RAATTY	3 cut(s)	763, 1131, 1482
XceI	RCATGY	2 cut(s)	127, 944
XmnI	GAANNNNTTC	1 cut(s)	827
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.