Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Reverse (-)

15180489 .. 15184300

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGAGCCCTAATTCAAATAGAGAAACAATGTTAGATGAAGAAGACTCCATGGAATTAGATAGCTTGGTGGTAGAGAAATGCCTTAGGTGTAGCGGCGATTGTGCTAGTGGAAAATTGCTAGTTTGTAGCGTGATTGGGTGCCCTATTTCTGTTCACGAGGAGTGTATGTGTTGTAAGCCTGAAATTGATGAGAAGGGAAGGTTCTACTGCCCTTACTGTGCTTACAAGAGAGCGTTGGTGCGGGAAGAGAAGCTGAGGAGGAAGGCAATGCAAGCTAAGGAAGTTCTGTCCATGTTTATCGATAGCGGTAGGATTAATTTTCCGGTGAATGATGGCGGTCGGGTGAGGAATGGAGGAGAAGATGATAGAGGTGAAGGCACAGCAGCAGGCATTGGGGTGGTTCGGGATGAGGTGAGAGTAGGCAGAGGGATGGATGGTGGCGAAACTGAGAATCGGACTATGGAAGTAGAAGAAAATGGACACGGGGAAATGGATGAGAATGTGAGTAAGGGAAATTCGGACCAACAATGTGTGTTGGAGAGGCGTGAGTTTGATAAGAGAAATGAAGATGATGCAGTTGATGGAATTGACCGAGGAGATGGGGATAGTATAAGGGGGAATGAGGAGAATGAAGGCAAAAGTCCGGGAGAAGAACTGATGCGACCAGAGGCAATGGAGGTGCCTGGAGATGACACTGTTGTGCCTGAATCTGGTGATTTCCAGAGTGGTTCTCCTCTATTGCGTAAGAGGCGTTATAAACAAAGAGCTCAAAAGATAGTGCAGCTTCCATATGCCGTTCCAGTAAGGATATTGCCTTCTTCATCAACAAAATCATCCTCTTGCCAAACTGATGCTGTAGAGGAGGATGCCGAGAAGCAAAGTGAGAAAGATGCTACCTCCTATTCCTCCGAGTCTAGAAAAGTTTCAGAATCAGACCAAAATGTGGAAGGTACTATCTCCTCCAAGTCAAGAGACATTCCAGAGTCAAACCCAAATCAGACAGCTACTACCTCCTCCAAGTCCAGAAAAAGCCCAGAGTCGAACCAAAATGGGAAAGTTACTACATCCTGCTTTGAGTCAAGAAAAGTTCCAGAATCAAACCAAAATGAGAAAGCTACCACCTCCGTGTCCTCTGAGTCAAGAGAAATTCCAGAGCCAAACCAAAATGAGAAAGCTACTAACGCTTTCTCCAAGTCAAGAAAAGATACAGACTCGAACCACAATGGGAAAACTACTACCTCCTCCACTGAACCAATAAAAGTTCCGGAATCTGAAAGTGAAGAATTGTTATTTCATAATGCCAAGCGGAGGAAAATTAAGTGGACAGCTGAAGAGTTAAAAATGTTAAAGGATGGGGTACGACTATTTTCAGCCCAAGTAAACAAAAATCTTCCCTGGAGGAAAATTTTGGAACTTGGTAAGGCTGTTTTTCACGAGACTCGGACTCCAGATAATCTTAAGGATAAATGGAAGCTCCTGAGCAGAGAAGCATCTAACAAAAAACAAAATCACTTGGACTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

508

Amino Acids

56.65

Weight (kDa)

5.41

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AccB1I	GGYRCC	2 cut(s)	138, 679
AccB7I	CCANNNNNTGG	1 cut(s)	943
AccIII	TCCGGA	1 cut(s)	1264
AciI	CCGC	5 cut(s)	93, 241, 306, 336, 1306
AcsI	RAATTY	3 cut(s)	514, 1146, 1404
AcuI	CTGAAG	1 cut(s)	1350
AfaI	GTAC	2 cut(s)	952, 1359
AfiI	CCNNNNNNNGG	3 cut(s)	710, 943, 1308
AflII	CTTAAG	1 cut(s)	1457
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	682, 1394
AleI	CACNNNNGTG	2 cut(s)	698, 1124
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	2 cut(s)	966, 1430
Aor13HI	TCCGGA	1 cut(s)	1264
ApeKI	GCWGC	2 cut(s)	383, 781
ApoI	RAATTY	3 cut(s)	514, 1146, 1404
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	922
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	5 cut(s)	337, 355, 383, 424, 725
AvaII	GGWCC	1 cut(s)	520
AxyI	CCTNAGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	138, 679
BanII	GRGCYC	2 cut(s)	8, 769
BauI	CACGAG	2 cut(s)	155, 1433
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	769
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	395, 793
BccI	CCATC	6 cut(s)	326, 424, 428, 575, 593, 1346
BceAI	ACGGC	1 cut(s)	779
BciT130I	CCWGG	2 cut(s)	684, 1396
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	966, 1430
BfaI	CTAG	3 cut(s)	105, 119, 915
BfmI	CTRYAG	1 cut(s)	855
BfrI	CTTAAG	1 cut(s)	1457
BisI	GCNGC	3 cut(s)	94, 384, 782
BlsI	GCNGC	3 cut(s)	95, 385, 783
Bme1390I	CCNGG	3 cut(s)	645, 684, 1396
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	2 cut(s)	140, 681
BmrFI	CCNGG	3 cut(s)	645, 684, 1396
BmsI	GCATC	6 cut(s)	562, 648, 841, 856, 880, 1499
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpmI	CTGGAG	3 cut(s)	705, 1417, 1431
Bpu10I	CCTNAGC	3 cut(s)	254, 276, 1478
BpuMI	CCSGG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	48, 592, 1394
BsaWI	WCCGGW	2 cut(s)	322, 1264
BsaXI	ACNNNNNCTCC	7 cut(s)	152, 182, 1172, 1202, 1429, 1459, 1502
Bsc4I	CCNNNNNNNGG	3 cut(s)	710, 943, 1308
Bse1I	ACTGG	1 cut(s)	800
Bse21I	CCTNAGG	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	273, 678
BseAI	TCCGGA	1 cut(s)	1264
BseBI	CCWGG	2 cut(s)	684, 1396
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	48, 592, 1394
BseGI	GGATG	8 cut(s)	412, 435, 439, 499, 833, 871, 1064, 1357
BseLI	CCNNNNNNNGG	3 cut(s)	710, 943, 1308
BseMI	GCAATG	2 cut(s)	273, 678
BseMII	CTCAG	4 cut(s)	245, 438, 1125, 1469
BseNI	ACTGG	1 cut(s)	800
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	395, 793
BsgI	GTGCAG	1 cut(s)	800
Bsh1285I	CGRYCG	1 cut(s)	340
BshNI	GGYRCC	2 cut(s)	138, 679
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	3 cut(s)	323, 644, 1265
BslI	CCNNNNNNNGG	3 cut(s)	710, 943, 1308
BsmAI	GTCTC	2 cut(s)	966, 1430
Bsp1286I	GDGCHC	3 cut(s)	8, 143, 769
Bsp13I	TCCGGA	1 cut(s)	1264
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	5 cut(s)	93, 241, 306, 336, 1306
BspCNI	CTCAG	4 cut(s)	246, 439, 1126, 1470
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	1264
BspLI	GGNNCC	2 cut(s)	140, 681
BspT107I	GGYRCC	2 cut(s)	138, 679
BspTI	CTTAAG	1 cut(s)	1457
BsrDI	GCAATG	2 cut(s)	273, 678
BsrI	ACTGG	1 cut(s)	800
BssECI	CCNNGG	3 cut(s)	48, 592, 1394
BssSI	CACGAG	2 cut(s)	155, 1433
BssT1I	CCWWGG	1 cut(s)	48
Bst2BI	CACGAG	2 cut(s)	155, 1433
Bst2UI	CCWGG	2 cut(s)	684, 1396
Bst4CI	ACNGT	2 cut(s)	218, 697
Bst6I	CTCTTC	2 cut(s)	240, 1326
BstAFI	CTTAAG	1 cut(s)	1457
BstC8I	GCNNGC	2 cut(s)	273, 388
BstDEI	CTNAG	6 cut(s)	83, 254, 276, 447, 1134, 1478
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	8 cut(s)	412, 435, 439, 499, 833, 871, 1064, 1357
BstMAI	GTCTC	2 cut(s)	966, 1430
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 748, 1181
BstNI	CCWGG	2 cut(s)	684, 1396
BstSCI	CCNGG	3 cut(s)	643, 682, 1394
BstSFI	CTRYAG	1 cut(s)	855
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	395, 793
BstV2I	GAAGAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	8 cut(s)	412, 435, 439, 499, 833, 871, 1064, 1357
BtsIMutI	CAGTG	2 cut(s)	693, 1245
Cac8I	GCNNGC	2 cut(s)	273, 388
Cfr13I	GGNCC	1 cut(s)	520
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	951, 1358
CviAII	CATG	2 cut(s)	49, 292
CviQI	GTAC	2 cut(s)	951, 1358
DdeI	CTNAG	6 cut(s)	83, 254, 276, 447, 1134, 1478
Eam1104I	CTCTTC	2 cut(s)	240, 1326
EarI	CTCTTC	2 cut(s)	240, 1326
Ecl136II	GAGCTC	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	8, 769
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	1350
Eco81I	CCTNAGG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	682, 1394
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	8, 769
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	52, 295
FaiI	YATR	9 cut(s)	50, 167, 293, 461, 611, 756, 790, 792, 1296
FatI	CATG	2 cut(s)	48, 291
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	790
Fnu4HI	GCNGC	3 cut(s)	94, 384, 782
FokI	GGATG	8 cut(s)	419, 442, 446, 506, 820, 878, 1051, 1364
FriOI	GRGCYC	2 cut(s)	8, 769
Fsp4HI	GCNGC	3 cut(s)	94, 384, 782
FspBI	CTAG	3 cut(s)	105, 119, 915
GluI	GCNGC	3 cut(s)	94, 384, 782
GsuI	CTGGAG	3 cut(s)	705, 1417, 1431
HapII	CCGG	3 cut(s)	323, 644, 1265
Hin1II	CATG	2 cut(s)	52, 295
HpaII	CCGG	3 cut(s)	323, 644, 1265
HphI	GGTGA	5 cut(s)	337, 355, 383, 424, 725
Hpy166II	GTNNAC	3 cut(s)	154, 1323, 1381
Hpy188I	TCNGA	9 cut(s)	456, 520, 910, 928, 934, 999, 1135, 1273, 1443
Hpy8I	GTNNAC	3 cut(s)	154, 1323, 1381
HpyAV	CCTTC	7 cut(s)	187, 192, 256, 368, 626, 825, 941
HpyCH4III	ACNGT	2 cut(s)	218, 697
HpyCH4V	TGCA	3 cut(s)	271, 575, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 748, 1181
HpyF3I	CTNAG	6 cut(s)	83, 254, 276, 447, 1134, 1478
Hsp92II	CATG	2 cut(s)	52, 295
Kpn2I	TCCGGA	1 cut(s)	1264
LmnI	GCTCC	1 cut(s)	1479
Lsp1109I	GCAGC	2 cut(s)	395, 793
LweI	GCATC	6 cut(s)	562, 648, 841, 856, 880, 1499
MaeI	CTAG	3 cut(s)	105, 119, 915
MaeIII	GTNAC	1 cut(s)	1057
MhlI	GDGCHC	3 cut(s)	8, 143, 769
MmeI	TCCRAC	1 cut(s)	516
MroI	TCCGGA	1 cut(s)	1264
MroXI	GAANNNNTTC	1 cut(s)	922
MseI	TTAA	5 cut(s)	315, 1317, 1337, 1346, 1458
MslI	CAYNNNNRTG	3 cut(s)	395, 698, 1124
MspA1I	CMGCKG	1 cut(s)	1328
MspCI	CTTAAG	1 cut(s)	1457
MspI	CCGG	3 cut(s)	323, 644, 1265
MspR9I	CCNGG	3 cut(s)	645, 684, 1396
MvaI	CCWGG	2 cut(s)	684, 1396
MwoI	GCNNNNNNNGC	3 cut(s)	272, 748, 1181
NciI	CCSGG	1 cut(s)	645
NcoI	CCATGG	1 cut(s)	48
NdeI	CATATG	1 cut(s)	790
NlaIII	CATG	2 cut(s)	52, 295
NlaIV	GGNNCC	2 cut(s)	140, 681
NmeAIII	GCCGAG	1 cut(s)	895
OliI	CACNNNNGTG	2 cut(s)	698, 1124
PdmI	GAANNNNTTC	1 cut(s)	922
PfeI	GAWTC	5 cut(s)	451, 707, 929, 1094, 1268
PflMI	CCANNNNNTGG	1 cut(s)	943
PfoI	TCCNGGA	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	95, 385, 783
PshBI	ATTAAT	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	682, 1394
PspGI	CCWGG	2 cut(s)	682, 1394
PspN4I	GGNNCC	2 cut(s)	140, 681
PspPI	GGNCC	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	1328
RsaI	GTAC	2 cut(s)	952, 1359
RsaNI	GTAC	2 cut(s)	951, 1358
RseI	CAYNNNNRTG	3 cut(s)	395, 698, 1124
SacI	GAGCTC	1 cut(s)	769
SaqAI	TTAA	5 cut(s)	315, 1317, 1337, 1346, 1458
SatI	GCNGC	3 cut(s)	94, 384, 782
Sau96I	GGNCC	1 cut(s)	520
ScrFI	CCNGG	3 cut(s)	645, 684, 1396
SduI	GDGCHC	3 cut(s)	8, 143, 769
SfaNI	GCATC	6 cut(s)	562, 648, 841, 856, 880, 1499
SfcI	CTRYAG	1 cut(s)	855
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	3 cut(s)	395, 698, 1124
SmlI	CTYRAG	1 cut(s)	1457
SmoI	CTYRAG	1 cut(s)	1457
SsiI	CCGC	5 cut(s)	93, 241, 306, 336, 1306
SspMI	CTAG	3 cut(s)	105, 119, 915
SstI	GAGCTC	1 cut(s)	769
StyD4I	CCNGG	3 cut(s)	643, 682, 1394
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	218, 697
TaqI	TCGA	3 cut(s)	300, 1040, 1214
TaqII	GACCGA	1 cut(s)	606
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	5 cut(s)	451, 707, 929, 1094, 1268
Tru1I	TTAA	5 cut(s)	315, 1317, 1337, 1346, 1458
Tru9I	TTAA	5 cut(s)	315, 1317, 1337, 1346, 1458
TscAI	CASTG	2 cut(s)	700, 1252
TseI	GCWGC	2 cut(s)	383, 781
TspDTI	ATGAA	5 cut(s)	51, 579, 645, 810, 1283
TspGWI	ACGGA	1 cut(s)	1114
TspRI	CASTG	2 cut(s)	700, 1252
Van91I	CCANNNNNTGG	1 cut(s)	943
Vha464I	CTTAAG	1 cut(s)	1457
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	3 cut(s)	514, 1146, 1404
XbaI	TCTAGA	1 cut(s)	914
XmnI	GAANNNNTTC	1 cut(s)	922
XspI	CTAG	3 cut(s)	105, 119, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.