SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780 |
| fragaria_vesca | FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680 |
| malus_domestica | MD09G1134000.v1.1 |
| prunus_persica | Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 |
| pyrus_communis | pycom09g05530 |
| rosa_chinensis | RchiOBHm_Chr2g0155231 |
| rosa_laevigata | RLG00000020828 |
| rosa_multiflora | Rmu_sc0012066.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00093850 |
| rosa_rugosa | Rorug02G0446200 |
| rosa_samantha | Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900 |
| rosa_wichuraiana | Rw2G042110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1074 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 319 |
| AatII | GACGTC | 1 cut(s) | 323 |
| Acc36I | ACCTGC | 1 cut(s) | 128 |
| Acc65I | GGTACC | 2 cut(s) | 37, 46 |
| AccB1I | GGYRCC | 4 cut(s) | 37, 46, 465, 997 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 135, 1261 |
| AccII | CGCG | 1 cut(s) | 204 |
| AccIII | TCCGGA | 1 cut(s) | 1582 |
| AciI | CCGC | 9 cut(s) | 195, 204, 268, 420, 568, 633, 716, 1500, 1624 |
| AclWI | GGATC | 3 cut(s) | 10, 15, 777 |
| AcoI | YGGCCR | 1 cut(s) | 150 |
| AcsI | RAATTY | 4 cut(s) | 253, 832, 1464, 1722 |
| AcuI | CTGAAG | 1 cut(s) | 1668 |
| AcyI | GRCGYC | 1 cut(s) | 320 |
| AfaI | GTAC | 4 cut(s) | 39, 48, 1270, 1677 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 135, 1028, 1261, 1626 |
| AflII | CTTAAG | 1 cut(s) | 1775 |
| AgsI | TTSAA | 2 cut(s) | 57, 342 |
| AhlI | ACTAGT | 1 cut(s) | 1681 |
| AjnI | CCWGG | 2 cut(s) | 1000, 1712 |
| AleI | CACNNNNGTG | 2 cut(s) | 1016, 1442 |
| AluBI | AGCT | 8 cut(s) | 580, 1085, 1102, 1322, 1433, 1493, 1646, 1792 |
| AluI | AGCT | 8 cut(s) | 580, 1085, 1102, 1322, 1433, 1493, 1646, 1792 |
| Alw21I | GWGCWC | 1 cut(s) | 1087 |
| Alw26I | GTCTC | 3 cut(s) | 230, 1284, 1748 |
| AlwI | GGATC | 3 cut(s) | 10, 15, 777 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 120 |
| Ama87I | CYCGRG | 1 cut(s) | 7 |
| Aor13HI | TCCGGA | 1 cut(s) | 1582 |
| AoxI | GGCC | 4 cut(s) | 4, 10, 67, 150 |
| ApaI | GGGCCC | 2 cut(s) | 8, 14 |
| ApeKI | GCWGC | 2 cut(s) | 701, 1099 |
| ApoI | RAATTY | 4 cut(s) | 253, 832, 1464, 1722 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1240 |
| Asp718I | GGTACC | 2 cut(s) | 37, 46 |
| AspLEI | GCGC | 1 cut(s) | 204 |
| AspS9I | GGNCC | 6 cut(s) | 4, 5, 10, 11, 68, 838 |
| AsuC2I | CCSGG | 3 cut(s) | 8, 9, 963 |
| AsuHPI | GGTGA | 6 cut(s) | 193, 209, 664, 701, 742, 1043 |
| AvaI | CYCGRG | 1 cut(s) | 7 |
| AvaII | GGWCC | 1 cut(s) | 838 |
| AxyI | CCTNAGG | 1 cut(s) | 410 |
| BaeGI | GKGCMC | 3 cut(s) | 8, 14, 470 |
| BanI | GGYRCC | 4 cut(s) | 37, 46, 465, 997 |
| BanII | GRGCYC | 4 cut(s) | 8, 14, 335, 1087 |
| BauI | CACGAG | 1 cut(s) | 1751 |
| BbsI | GAAGAC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 1087 |
| BbvCI | CCTCAGC | 1 cut(s) | 581 |
| BbvI | GCAGC | 2 cut(s) | 713, 1111 |
| BccI | CCATC | 7 cut(s) | 235, 653, 742, 746, 893, 911, 1664 |
| BceAI | ACGGC | 1 cut(s) | 1097 |
| BciT130I | CCWGG | 2 cut(s) | 1002, 1714 |
| BcnI | CCSGG | 3 cut(s) | 8, 9, 963 |
| BcoDI | GTCTC | 3 cut(s) | 230, 1284, 1748 |
| BcuI | ACTAGT | 1 cut(s) | 1681 |
| BfaI | CTAG | 4 cut(s) | 432, 446, 1233, 1682 |
| BfmI | CTRYAG | 1 cut(s) | 1173 |
| BfrI | CTTAAG | 1 cut(s) | 1775 |
| BfuAI | ACCTGC | 1 cut(s) | 128 |
| BisI | GCNGC | 3 cut(s) | 421, 702, 1100 |
| BlsI | GCNGC | 3 cut(s) | 422, 703, 1101 |
| Bme1390I | CCNGG | 5 cut(s) | 8, 9, 963, 1002, 1714 |
| Bme18I | GGWCC | 1 cut(s) | 838 |
| BmeT110I | CYCGRG | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 5, 10, 11, 68, 838 |
| BmiI | GGNNCC | 6 cut(s) | 6, 12, 39, 48, 467, 999 |
| BmrFI | CCNGG | 5 cut(s) | 8, 9, 963, 1002, 1714 |
| BmsI | GCATC | 6 cut(s) | 880, 966, 1159, 1174, 1198, 1817 |
| BpiI | GAAGAC | 1 cut(s) | 375 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1033, 1065 |
| BpmI | CTGGAG | 4 cut(s) | 85, 1023, 1735, 1749 |
| Bpu10I | CCTNAGC | 3 cut(s) | 581, 603, 1796 |
| BpuMI | CCSGG | 3 cut(s) | 8, 9, 963 |
| Bsa29I | ATCGAT | 1 cut(s) | 627 |
| BsaHI | GRCGYC | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 5 cut(s) | 7, 64, 375, 910, 1712 |
| BsaWI | WCCGGW | 1 cut(s) | 1582 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 479, 509, 599, 629, 1747, 1777, 1820 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 135, 1028, 1261, 1626 |
| Bse118I | RCCGGY | 1 cut(s) | 148 |
| Bse21I | CCTNAGG | 1 cut(s) | 410 |
| Bse3DI | GCAATG | 2 cut(s) | 600, 996 |
| BseAI | TCCGGA | 1 cut(s) | 1582 |
| BseBI | CCWGG | 2 cut(s) | 1002, 1714 |
| BseCI | ATCGAT | 1 cut(s) | 627 |
| BseDI | CCNNGG | 5 cut(s) | 7, 64, 375, 910, 1712 |
| BseGI | GGATG | 8 cut(s) | 730, 753, 757, 817, 1151, 1189, 1382, 1675 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 135, 1028, 1261, 1626 |
| BseMI | GCAATG | 2 cut(s) | 600, 996 |
| BseMII | CTCAG | 4 cut(s) | 300, 572, 756, 1787 |
| BseRI | GAGGAG | 9 cut(s) | 500, 598, 927, 956, 1041, 1193, 1267, 1321, 1549 |
| BseSI | GKGCMC | 3 cut(s) | 8, 14, 470 |
| BseXI | GCAGC | 2 cut(s) | 713, 1111 |
| BsgI | GTGCAG | 1 cut(s) | 1118 |
| Bsh1236I | CGCG | 1 cut(s) | 204 |
| BshFI | GGCC | 4 cut(s) | 6, 12, 69, 152 |
| BshNI | GGYRCC | 4 cut(s) | 37, 46, 465, 997 |
| BshVI | ATCGAT | 1 cut(s) | 627 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1087 |
| BsiHKCI | CYCGRG | 1 cut(s) | 7 |
| BsiSI | CCGG | 4 cut(s) | 8, 149, 962, 1583 |
| BslFI | GGGAC | 4 cut(s) | 58, 63, 68, 1432 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 135, 1028, 1261, 1626 |
| BsmAI | GTCTC | 3 cut(s) | 230, 1284, 1748 |
| BsmBI | CGTCTC | 1 cut(s) | 230 |
| BsmFI | GGGAC | 4 cut(s) | 58, 63, 68, 1432 |
| BsnI | GGCC | 4 cut(s) | 6, 12, 69, 152 |
| BsoBI | CYCGRG | 1 cut(s) | 7 |
| Bsp120I | GGGCCC | 2 cut(s) | 4, 10 |
| Bsp1286I | GDGCHC | 5 cut(s) | 8, 14, 335, 470, 1087 |
| Bsp13I | TCCGGA | 1 cut(s) | 1582 |
| Bsp143I | GATC | 4 cut(s) | 15, 20, 186, 769 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspACI | CCGC | 9 cut(s) | 195, 204, 268, 420, 568, 633, 716, 1500, 1624 |
| BspANI | GGCC | 4 cut(s) | 6, 12, 69, 152 |
| BspCNI | CTCAG | 4 cut(s) | 299, 573, 757, 1788 |
| BspDI | ATCGAT | 1 cut(s) | 627 |
| BspEI | TCCGGA | 1 cut(s) | 1582 |
| BspFNI | CGCG | 1 cut(s) | 204 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 6 cut(s) | 6, 12, 39, 48, 467, 999 |
| BspMI | ACCTGC | 1 cut(s) | 128 |
| BspPI | GGATC | 3 cut(s) | 10, 15, 777 |
| BspT107I | GGYRCC | 4 cut(s) | 37, 46, 465, 997 |
| BspTI | CTTAAG | 1 cut(s) | 1775 |
| BsrDI | GCAATG | 2 cut(s) | 600, 996 |
| BsrFI | RCCGGY | 1 cut(s) | 148 |
| BssAI | RCCGGY | 1 cut(s) | 148 |
| BssECI | CCNNGG | 5 cut(s) | 7, 64, 375, 910, 1712 |
| BssMI | GATC | 4 cut(s) | 15, 20, 186, 769 |
| BssNI | GRCGYC | 1 cut(s) | 320 |
| BssSI | CACGAG | 1 cut(s) | 1751 |
| BssT1I | CCWWGG | 2 cut(s) | 64, 375 |
| Bst2BI | CACGAG | 1 cut(s) | 1751 |
| Bst2UI | CCWGG | 2 cut(s) | 1002, 1714 |
| Bst4CI | ACNGT | 6 cut(s) | 42, 135, 231, 545, 736, 1015 |
| Bst6I | CTCTTC | 3 cut(s) | 284, 567, 1644 |
| BstACI | GRCGYC | 1 cut(s) | 320 |
| BstAFI | CTTAAG | 1 cut(s) | 1775 |
| BstC8I | GCNNGC | 3 cut(s) | 125, 600, 706 |
| BstDEI | CTNAG | 6 cut(s) | 286, 410, 581, 603, 765, 1796 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 8 cut(s) | 730, 753, 757, 817, 1151, 1189, 1382, 1675 |
| BstFNI | CGCG | 1 cut(s) | 204 |
| BstHHI | GCGC | 1 cut(s) | 204 |
| BstKTI | GATC | 4 cut(s) | 18, 23, 189, 772 |
| BstMAI | GTCTC | 3 cut(s) | 230, 1284, 1748 |
| BstMBI | GATC | 4 cut(s) | 15, 20, 186, 769 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 201, 599, 1066, 1118, 1499 |
| BstNI | CCWGG | 2 cut(s) | 1002, 1714 |
| BstSCI | CCNGG | 5 cut(s) | 6, 7, 961, 1000, 1712 |
| BstSFI | CTRYAG | 1 cut(s) | 1173 |
| BstSLI | GKGCMC | 3 cut(s) | 8, 14, 470 |
| BstUI | CGCG | 1 cut(s) | 204 |
| BstV1I | GCAGC | 2 cut(s) | 713, 1111 |
| BstV2I | GAAGAC | 1 cut(s) | 375 |
| Bsu15I | ATCGAT | 1 cut(s) | 627 |
| Bsu36I | CCTNAGG | 1 cut(s) | 410 |
| BsuRI | GGCC | 4 cut(s) | 6, 12, 69, 152 |
| BsuTUI | ATCGAT | 1 cut(s) | 627 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtsCI | GGATG | 8 cut(s) | 730, 753, 757, 817, 1151, 1189, 1382, 1675 |
| BtsIMutI | CAGTG | 3 cut(s) | 140, 1011, 1563 |
| BveI | ACCTGC | 1 cut(s) | 128 |
| Cac8I | GCNNGC | 3 cut(s) | 125, 600, 706 |
| CaiI | CAGNNNCTG | 1 cut(s) | 120 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 1 cut(s) | 204 |
| Cfr10I | RCCGGY | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 5, 10, 11, 68, 838 |
| Cfr9I | CCCGGG | 1 cut(s) | 7 |
| ClaI | ATCGAT | 1 cut(s) | 627 |
| CseI | GACGC | 1 cut(s) | 1443 |
| Csp6I | GTAC | 4 cut(s) | 38, 47, 1269, 1676 |
| CviAII | CATG | 4 cut(s) | 106, 376, 482, 619 |
| CviQI | GTAC | 4 cut(s) | 38, 47, 1269, 1676 |
| DdeI | CTNAG | 6 cut(s) | 286, 410, 581, 603, 765, 1796 |
| DpnI | GATC | 4 cut(s) | 17, 22, 188, 771 |
| DpnII | GATC | 4 cut(s) | 15, 20, 186, 769 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 319 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 319 |
| EaeI | YGGCCR | 1 cut(s) | 150 |
| Eam1104I | CTCTTC | 3 cut(s) | 284, 567, 1644 |
| EarI | CTCTTC | 3 cut(s) | 284, 567, 1644 |
| Ecl136II | GAGCTC | 1 cut(s) | 1085 |
| Eco130I | CCWWGG | 2 cut(s) | 64, 375 |
| Eco24I | GRGCYC | 4 cut(s) | 8, 14, 335, 1087 |
| Eco47I | GGWCC | 1 cut(s) | 838 |
| Eco53kI | GAGCTC | 1 cut(s) | 1085 |
| Eco57I | CTGAAG | 1 cut(s) | 1668 |
| Eco81I | CCTNAGG | 1 cut(s) | 410 |
| Eco88I | CYCGRG | 1 cut(s) | 7 |
| EcoICRI | GAGCTC | 1 cut(s) | 1085 |
| EcoRII | CCWGG | 2 cut(s) | 1000, 1712 |
| EcoT14I | CCWWGG | 2 cut(s) | 64, 375 |
| EcoT38I | GRGCYC | 4 cut(s) | 8, 14, 335, 1087 |
| ErhI | CCWWGG | 2 cut(s) | 64, 375 |
| Esp3I | CGTCTC | 1 cut(s) | 230 |
| FaeI | CATG | 4 cut(s) | 109, 379, 485, 622 |
| FaqI | GGGAC | 4 cut(s) | 58, 63, 68, 1432 |
| FatI | CATG | 4 cut(s) | 105, 375, 481, 618 |
| FauI | CCCGC | 1 cut(s) | 561 |
| Fnu4HI | GCNGC | 3 cut(s) | 421, 702, 1100 |
| FokI | GGATG | 8 cut(s) | 737, 760, 764, 824, 1138, 1196, 1369, 1682 |
| FriOI | GRGCYC | 4 cut(s) | 8, 14, 335, 1087 |
| Fsp4HI | GCNGC | 3 cut(s) | 421, 702, 1100 |
| FspBI | CTAG | 4 cut(s) | 432, 446, 1233, 1682 |
| GlaI | GCGC | 1 cut(s) | 203 |
| GluI | GCNGC | 3 cut(s) | 421, 702, 1100 |
| GsuI | CTGGAG | 4 cut(s) | 85, 1023, 1735, 1749 |
| HaeIII | GGCC | 4 cut(s) | 6, 12, 69, 152 |
| HapII | CCGG | 4 cut(s) | 8, 149, 962, 1583 |
| HgaI | GACGC | 1 cut(s) | 1443 |
| HhaI | GCGC | 1 cut(s) | 204 |
| Hin1I | GRCGYC | 1 cut(s) | 320 |
| Hin1II | CATG | 4 cut(s) | 109, 379, 485, 622 |
| Hin6I | GCGC | 1 cut(s) | 202 |
| HinP1I | GCGC | 1 cut(s) | 202 |
| HincII | GTYRAC | 1 cut(s) | 1143 |
| HindII | GTYRAC | 1 cut(s) | 1143 |
| HpaII | CCGG | 4 cut(s) | 8, 149, 962, 1583 |
| HphI | GGTGA | 6 cut(s) | 193, 209, 664, 701, 742, 1043 |
| Hpy166II | GTNNAC | 2 cut(s) | 1143, 1641 |
| Hpy8I | GTNNAC | 2 cut(s) | 1143, 1641 |
| Hpy99I | CGWCG | 8 cut(s) | 46, 181, 235, 310, 313, 316, 319, 322 |
| HpyAV | CCTTC | 7 cut(s) | 514, 519, 583, 686, 944, 1143, 1259 |
| HpyCH4III | ACNGT | 6 cut(s) | 42, 135, 231, 545, 736, 1015 |
| HpyCH4IV | ACGT | 1 cut(s) | 320 |
| HpyCH4V | TGCA | 5 cut(s) | 123, 251, 598, 893, 1099 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 201, 599, 1066, 1118, 1499 |
| HpyF3I | CTNAG | 6 cut(s) | 286, 410, 581, 603, 765, 1796 |
| HpySE526I | ACGT | 1 cut(s) | 320 |
| Hsp92I | GRCGYC | 1 cut(s) | 320 |
| Hsp92II | CATG | 4 cut(s) | 109, 379, 485, 622 |
| HspAI | GCGC | 1 cut(s) | 202 |
| Kpn2I | TCCGGA | 1 cut(s) | 1582 |
| KpnI | GGTACC | 2 cut(s) | 41, 50 |
| Kzo9I | GATC | 4 cut(s) | 15, 20, 186, 769 |
| LmnI | GCTCC | 1 cut(s) | 1797 |
| Lsp1109I | GCAGC | 2 cut(s) | 713, 1111 |
| LweI | GCATC | 6 cut(s) | 880, 966, 1159, 1174, 1198, 1817 |
| MaeI | CTAG | 4 cut(s) | 432, 446, 1233, 1682 |
| MaeII | ACGT | 1 cut(s) | 320 |
| MaeIII | GTNAC | 2 cut(s) | 730, 1375 |
| MalI | GATC | 4 cut(s) | 17, 22, 188, 771 |
| MboI | GATC | 4 cut(s) | 15, 20, 186, 769 |
| MhlI | GDGCHC | 5 cut(s) | 8, 14, 335, 470, 1087 |
| MlyI | GAGTC | 9 cut(s) | 365, 1238, 1310, 1364, 1403, 1523, 1750, 1756, 1829 |
| MmeI | TCCRAC | 2 cut(s) | 213, 834 |
| MroI | TCCGGA | 1 cut(s) | 1582 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1240 |
| MseI | TTAA | 5 cut(s) | 642, 1635, 1655, 1664, 1776 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1016, 1442 |
| MspA1I | CMGCKG | 1 cut(s) | 1646 |
| MspCI | CTTAAG | 1 cut(s) | 1775 |
| MspI | CCGG | 4 cut(s) | 8, 149, 962, 1583 |
| MspR9I | CCNGG | 5 cut(s) | 8, 9, 963, 1002, 1714 |
| MvaI | CCWGG | 2 cut(s) | 1002, 1714 |
| MvnI | CGCG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 201, 599, 1066, 1118, 1499 |
| NciI | CCSGG | 3 cut(s) | 8, 9, 963 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeII | GATC | 4 cut(s) | 15, 20, 186, 769 |
| NlaIII | CATG | 4 cut(s) | 109, 379, 485, 622 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 12, 39, 48, 467, 999 |
| NmeAIII | GCCGAG | 1 cut(s) | 1213 |
| NmuCI | GTSAC | 1 cut(s) | 730 |
| OliI | CACNNNNGTG | 2 cut(s) | 1016, 1442 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 302, 314, 317 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1240 |
| PfeI | GAWTC | 5 cut(s) | 245, 1025, 1247, 1412, 1586 |
| PflFI | GACNNNGTC | 1 cut(s) | 319 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 135, 1261 |
| PfoI | TCCNGGA | 1 cut(s) | 961 |
| PkrI | GCNGC | 3 cut(s) | 422, 703, 1101 |
| PleI | GAGTC | 9 cut(s) | 365, 1237, 1309, 1363, 1402, 1523, 1750, 1756, 1829 |
| PpsI | GAGTC | 9 cut(s) | 365, 1237, 1309, 1363, 1402, 1523, 1750, 1756, 1829 |
| PsiI | TTATAA | 1 cut(s) | 1074 |
| Psp124BI | GAGCTC | 1 cut(s) | 1087 |
| Psp6I | CCWGG | 2 cut(s) | 1000, 1712 |
| PspGI | CCWGG | 2 cut(s) | 1000, 1712 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 12, 39, 48, 467, 999 |
| PspOMI | GGGCCC | 2 cut(s) | 4, 10 |
| PspPI | GGNCC | 6 cut(s) | 4, 5, 10, 11, 68, 838 |
| PstNI | CAGNNNCTG | 1 cut(s) | 120 |
| PsyI | GACNNNGTC | 1 cut(s) | 319 |
| PvuII | CAGCTG | 1 cut(s) | 1646 |
| RsaI | GTAC | 4 cut(s) | 39, 48, 1270, 1677 |
| RsaNI | GTAC | 4 cut(s) | 38, 47, 1269, 1676 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1016, 1442 |
| SacI | GAGCTC | 1 cut(s) | 1087 |
| SaqAI | TTAA | 5 cut(s) | 642, 1635, 1655, 1664, 1776 |
| SatI | GCNGC | 3 cut(s) | 421, 702, 1100 |
| Sau3AI | GATC | 4 cut(s) | 15, 20, 186, 769 |
| Sau96I | GGNCC | 6 cut(s) | 4, 5, 10, 11, 68, 838 |
| SchI | GAGTC | 9 cut(s) | 365, 1238, 1310, 1364, 1403, 1523, 1750, 1756, 1829 |
| ScrFI | CCNGG | 5 cut(s) | 8, 9, 963, 1002, 1714 |
| SduI | GDGCHC | 5 cut(s) | 8, 14, 335, 470, 1087 |
| SfaNI | GCATC | 6 cut(s) | 880, 966, 1159, 1174, 1198, 1817 |
| SfcI | CTRYAG | 1 cut(s) | 1173 |
| SinI | GGWCC | 1 cut(s) | 838 |
| SmaI | CCCGGG | 1 cut(s) | 9 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1016, 1442 |
| SmlI | CTYRAG | 1 cut(s) | 1775 |
| SmoI | CTYRAG | 1 cut(s) | 1775 |
| SpeI | ACTAGT | 1 cut(s) | 1681 |
| SrfI | GCCCGGGC | 1 cut(s) | 9 |
| SsiI | CCGC | 9 cut(s) | 195, 204, 268, 420, 568, 633, 716, 1500, 1624 |
| SspI | AATATT | 1 cut(s) | 94 |
| SspMI | CTAG | 4 cut(s) | 432, 446, 1233, 1682 |
| SstI | GAGCTC | 1 cut(s) | 1087 |
| StyD4I | CCNGG | 5 cut(s) | 6, 7, 961, 1000, 1712 |
| StyI | CCWWGG | 2 cut(s) | 64, 375 |
| TaaI | ACNGT | 6 cut(s) | 42, 135, 231, 545, 736, 1015 |
| TaiI | ACGT | 1 cut(s) | 323 |
| TaqI | TCGA | 3 cut(s) | 627, 1358, 1532 |
| TaqII | GACCGA | 2 cut(s) | 762, 924 |
| TauI | GCSGC | 1 cut(s) | 423 |
| TfiI | GAWTC | 5 cut(s) | 245, 1025, 1247, 1412, 1586 |
| Tru1I | TTAA | 5 cut(s) | 642, 1635, 1655, 1664, 1776 |
| Tru9I | TTAA | 5 cut(s) | 642, 1635, 1655, 1664, 1776 |
| TscAI | CASTG | 3 cut(s) | 140, 1018, 1570 |
| TseFI | GTSAC | 1 cut(s) | 730 |
| TseI | GCWGC | 2 cut(s) | 701, 1099 |
| Tsp45I | GTSAC | 1 cut(s) | 730 |
| TspDTI | ATGAA | 8 cut(s) | 122, 198, 378, 470, 804, 897, 963, 1601 |
| TspGWI | ACGGA | 3 cut(s) | 1095, 1128, 1432 |
| TspMI | CCCGGG | 1 cut(s) | 7 |
| TspRI | CASTG | 3 cut(s) | 140, 1018, 1570 |
| Tth111I | GACNNNGTC | 1 cut(s) | 319 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 135, 1261 |
| Vha464I | CTTAAG | 1 cut(s) | 1775 |
| VpaK11BI | GGWCC | 1 cut(s) | 838 |
| XapI | RAATTY | 4 cut(s) | 253, 832, 1464, 1722 |
| XbaI | TCTAGA | 1 cut(s) | 1232 |
| XmaI | CCCGGG | 1 cut(s) | 7 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1240 |
| XspI | CTAG | 4 cut(s) | 432, 446, 1233, 1682 |
| ZraI | GACGTC | 1 cut(s) | 321 |