MD09G1134000.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006467
Physical Location & Seq
Reverse (-)
10310548 .. 10315293
4746 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1134000.v1.1.491

Sequence Viewer

Length: 1722 bp
ATGGAATTGGATGGATTGTTAGAAGTTGAGAATTGTGTTAGGTGTAACGATGGTGGTTCTGGAAGTAGGAAATTGATGGTTTGTAGTGAGAAGGGATGCCCAATTGCTCTCCATGAGGAGTGCATGTGTGCAAGGCCTGTTTTTGATCAATTGGGAAAGTTTTACTGCCCGTATTGCGCGTATAAGCGGGAGTTTTTTCGGTGTCGGGAGTTGGGGAGGAAGGTAATGGGGTCCAAGAGTGTGTTGTCTAAGTTTATTGATGCAGGAGAGGGGGAGGATTGTGGGTGTGAGACGGGCGGGTGGGGTGGTGTTGAGGTTCGGGGTCAGTATGTGGGAGTAGAAGGAGGTGGGGCTGTGGAAGGGGGAACTGACCAGAGGAGGGAGATTGAAGATGTAAGGGGTGAGGAGAGAATAGATGAGGACCCTGAGGAGGAGGAAATTGTTGAAGAGACACAAGAAGAGGATGCAGAGCCAAGAGAAACAATGAATAACGACAATGCACGTGATGGATTAGACCGAAGAGATGAGGAGGATTGTCTAAGGGTGTCGGAGGAGAGCAAGGGAGGAAGTGATGAAGAAGAACAAGAAGAGGAGACAGAGCCCCAGAGTGGTTGTTGTGTACAAGAAATGACGAATAATCACAATGCACATGGATTATCAGACCAAAGAGATGAAGAGGATGGTAAACGGGTGCCTGAGGAGAACGAGGGCGAAAGTGAGGATGAGGAACAAATGCAGTCAGTGGAAAAGGAGGTGCCCGGAAATTCTACTGTTGTGCCTGAATCTGATGAGTTAGATACGGGGTCTCCACTAGTGAGGAAGCAGCGTTTCAAACAGAAGAGTAAAAGGATAAAACAGCCTCAAAGTGTAGCTTCCTTAAGGACAGTGCCCTCTTCATCAAGGGAATTATCAGCTCGTCGAACAAGGTCTGCAGAGGAGCATGCTAAAAACCAAAATGGAAAAGCTAAAACCTTTTCCAAGAAGGAAAGAGAAAATCAGGAATCTGCAAGAAACTTGGTACTTCCTAATGTGAAGGGTAAGAGATCAAAATGGACAGATGAAGAGATAAAAATGTTGAAGGAGGGAGTGAGAGTTTGTGGATCATCAAACGGAAAGATGCAGTGGAAGAAAATTTTGGAATATGGTCATAAAGTGTTTCACAGAACCCGTGAACCAGTTGATCTTAAAGATAAATGGAGGAGGAGCTTGGGGAAAGAAAATAAAGACAATGCACATGATGGATTCGACCAAAGAGATGAGAAGGATGGTATAAGGCTGTCTGAGGAGAATGAGGGCAAAAGTGAGGATGAAGAACAGATGCGATCAGTAGAAAAGGAGGTGCCTGGAAAGTCCAATGTTGATTCAAAATCTGAAAATTTAGATACTGGGTCTCCTCTGGTGCGAAGCAAGCAACTCAAACAAAAAGCTAAAACGAAAGAACAGCCTCCAAATGCTAAAACCTTTTCCAAGAGGGAAAGAGAAATTCAGGAGTCTTCAAGAAACTTGGTACTTCCTAATGGGAAGCGGAAGAGATTAGATTGGACAGATGAAGAGTTAAAAATGTTAAAGGAGGGAGTGAGACTTCATGGAACATTAAATGGAAAGATGCAGTGGAAGGAAATTTTGGAATATGGTCATAATGTGTTTCATGTAACCCGTCAACCAGTTGATCTCAAGGATAAATGGAGGAGGTACTTTCGCGAAAAAGCTAGAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

574

Amino Acids

65.64

Weight (kDa)

5.45

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 511 - 565 6.8e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 691, 754, 1339
AccII CGCG 2 cut(s) 179, 1701
AciI CCGC 3 cut(s) 187, 297, 1525
AclWI GGATC 1 cut(s) 1108
AcsI RAATTY 5 cut(s) 763, 1131, 1375, 1482, 1620
AcvI CACGTG 1 cut(s) 503
AfaI GTAC 4 cut(s) 621, 1020, 1509, 1694
AfiI CCNNNNNNNGG 3 cut(s) 379, 430, 608
AflII CTTAAG 1 cut(s) 877
AgsI TTSAA 6 cut(s) 389, 446, 832, 1078, 1365, 1497
AhlI ACTAGT 1 cut(s) 811
AjnI CCWGG 1 cut(s) 1342
AjuI GAANNNNNNNTTGG 4 cut(s) 1118, 1150, 1607, 1639
AluBI AGCT 6 cut(s) 872, 914, 965, 1206, 1427, 1709
AluI AGCT 6 cut(s) 872, 914, 965, 1206, 1427, 1709
Alw26I GTCTC 6 cut(s) 284, 443, 587, 810, 1395, 1573
AlwI GGATC 1 cut(s) 1108
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 823
ApoI RAATTY 5 cut(s) 763, 1131, 1375, 1482, 1620
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 231, 421
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 2 cut(s) 231, 421
AxyI CCTNAGG 2 cut(s) 426, 696
BaeGI GKGCMC 2 cut(s) 759, 891
BanI GGYRCC 3 cut(s) 691, 754, 1339
BanII GRGCYC 1 cut(s) 603
BbrPI CACGTG 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 1485
BbvI GCAGC 1 cut(s) 835
BccI CCATC 7 cut(s) 5, 44, 70, 500, 674, 1232, 1259
BciT130I CCWGG 1 cut(s) 1344
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 6 cut(s) 284, 443, 587, 810, 1395, 1573
BcuI ACTAGT 1 cut(s) 811
BfaI CTAG 2 cut(s) 812, 1710
BfmI CTRYAG 1 cut(s) 930
BfrI CTTAAG 1 cut(s) 877
BisI GCNGC 1 cut(s) 824
BlsI GCNGC 1 cut(s) 825
Bme1390I CCNGG 2 cut(s) 759, 1344
Bme18I GGWCC 2 cut(s) 231, 421
BmgT120I GGNCC 2 cut(s) 231, 421
BmiI GGNNCC 5 cut(s) 232, 423, 693, 756, 1341
BmrFI CCNGG 2 cut(s) 759, 1344
BmrI ACTGGG 1 cut(s) 1395
BmsI GCATC 6 cut(s) 86, 250, 454, 1107, 1308, 1596
BmuI ACTGGG 1 cut(s) 1395
BpiI GAAGAC 1 cut(s) 1485
BpuEI CTTGAG 1 cut(s) 1658
BpuMI CCSGG 1 cut(s) 759
BsaAI YACGTR 1 cut(s) 503
BsaI GGTCTC 2 cut(s) 810, 1395
BsaXI ACNNNNNCTCC 8 cut(s) 110, 140, 790, 820, 1077, 1107, 1375, 1405
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 430, 608
Bse1I ACTGG 3 cut(s) 1175, 1390, 1664
Bse21I CCTNAGG 2 cut(s) 426, 696
BseBI CCWGG 1 cut(s) 1344
BseGI GGATG 7 cut(s) 16, 101, 469, 685, 727, 1270, 1312
BseLI CCNNNNNNNGG 3 cut(s) 379, 430, 608
BseMII CTCAG 3 cut(s) 417, 687, 1272
BseNI ACTGG 3 cut(s) 1175, 1390, 1664
BseSI GKGCMC 2 cut(s) 759, 891
BseXI GCAGC 1 cut(s) 835
Bsh1236I CGCG 2 cut(s) 179, 1701
BshFI GGCC 1 cut(s) 136
BshNI GGYRCC 3 cut(s) 691, 754, 1339
BsiSI CCGG 1 cut(s) 759
BslI CCNNNNNNNGG 3 cut(s) 379, 430, 608
BsmAI GTCTC 6 cut(s) 284, 443, 587, 810, 1395, 1573
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 136
Bso31I GGTCTC 2 cut(s) 810, 1395
Bsp1286I GDGCHC 3 cut(s) 603, 759, 891
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
Bsp68I TCGCGA 1 cut(s) 1701
BspACI CCGC 3 cut(s) 187, 297, 1525
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 3 cut(s) 418, 688, 1273
BspFNI CGCG 2 cut(s) 179, 1701
BspLI GGNNCC 5 cut(s) 232, 423, 693, 756, 1341
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 1 cut(s) 1108
BspT107I GGYRCC 3 cut(s) 691, 754, 1339
BspTI CTTAAG 1 cut(s) 877
BspTNI GGTCTC 2 cut(s) 810, 1395
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 3 cut(s) 1175, 1390, 1664
BssMI GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
Bst2UI CCWGG 1 cut(s) 1344
Bst4CI ACNGT 2 cut(s) 772, 886
BstAFI CTTAAG 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 619
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 942, 1409
BstDEI CTNAG 5 cut(s) 249, 426, 539, 696, 1281
BstF5I GGATG 7 cut(s) 16, 101, 469, 685, 727, 1270, 1312
BstFNI CGCG 2 cut(s) 179, 1701
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 6 cut(s) 148, 1046, 1103, 1183, 1325, 1672
BstMAI GTCTC 6 cut(s) 284, 443, 587, 810, 1395, 1573
BstMBI GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
BstMWI GCNNNNNNNGC 2 cut(s) 174, 1408
BstNI CCWGG 1 cut(s) 1344
BstNSI RCATGY 2 cut(s) 127, 944
BstSCI CCNGG 2 cut(s) 757, 1342
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 2 cut(s) 759, 891
BstUI CGCG 2 cut(s) 179, 1701
BstV1I GCAGC 1 cut(s) 835
BstV2I GAAGAC 1 cut(s) 1485
Bsu36I CCTNAGG 2 cut(s) 426, 696
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 7 cut(s) 16, 101, 469, 685, 727, 1270, 1312
BtsI GCAGTG 2 cut(s) 1127, 1616
BtsIMutI CAGTG 4 cut(s) 747, 891, 1127, 1616
BtuMI TCGCGA 1 cut(s) 1701
Cac8I GCNNGC 2 cut(s) 942, 1409
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 231, 421
Csp6I GTAC 4 cut(s) 620, 1019, 1508, 1693
CviAII CATG 7 cut(s) 113, 124, 650, 941, 1235, 1586, 1649
CviQI GTAC 4 cut(s) 620, 1019, 1508, 1693
DdeI CTNAG 5 cut(s) 249, 426, 539, 696, 1281
DpnI GATC 6 cut(s) 147, 1045, 1102, 1182, 1324, 1671
DpnII GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
Eco147I AGGCCT 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 603
Eco31I GGTCTC 2 cut(s) 810, 1395
Eco47I GGWCC 2 cut(s) 231, 421
Eco72I CACGTG 1 cut(s) 503
Eco81I CCTNAGG 2 cut(s) 426, 696
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 1342
EcoT38I GRGCYC 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 7 cut(s) 116, 127, 653, 944, 1238, 1589, 1652
FalI AAGNNNNNCTT 2 cut(s) 856, 888
FatI CATG 7 cut(s) 112, 123, 649, 940, 1234, 1585, 1648
FauI CCCGC 2 cut(s) 180, 290
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 824
FokI GGATG 7 cut(s) 23, 108, 476, 692, 734, 1277, 1319
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 1 cut(s) 824
FspBI CTAG 2 cut(s) 812, 1710
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 824
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 759
HhaI GCGC 1 cut(s) 179
Hin1II CATG 7 cut(s) 116, 127, 653, 944, 1238, 1589, 1652
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 1661
HindII GTYRAC 1 cut(s) 1661
HinfI GANTC 5 cut(s) 782, 1001, 1242, 1361, 1490
HpaII CCGG 1 cut(s) 759
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 4 cut(s) 620, 686, 1172, 1661
Hpy188I TCNGA 5 cut(s) 550, 661, 787, 1282, 1372
Hpy188III TCNNGA 6 cut(s) 60, 206, 998, 1487, 1497, 1700
Hpy8I GTNNAC 4 cut(s) 620, 686, 1172, 1661
Hpy99I CGWCG 1 cut(s) 921
HpyAV CCTTC 9 cut(s) 85, 214, 335, 353, 976, 1027, 1072, 1255, 1609
HpyCH4III ACNGT 2 cut(s) 772, 886
HpyCH4IV ACGT 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 1408
HpyF3I CTNAG 5 cut(s) 249, 426, 539, 696, 1281
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 7 cut(s) 116, 127, 653, 944, 1238, 1589, 1652
HspAI GCGC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
LmnI GCTCC 2 cut(s) 937, 1203
Lsp1109I GCAGC 1 cut(s) 835
LweI GCATC 6 cut(s) 86, 250, 454, 1107, 1308, 1596
MaeI CTAG 2 cut(s) 812, 1710
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 44, 1651
MalI GATC 6 cut(s) 147, 1045, 1102, 1182, 1324, 1671
MboI GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
MfeI CAATTG 2 cut(s) 102, 149
MhlI GDGCHC 3 cut(s) 603, 759, 891
MlyI GAGTC 1 cut(s) 1499
MmeI TCCRAC 1 cut(s) 528
MseI TTAA 5 cut(s) 878, 1185, 1556, 1565, 1595
MspCI CTTAAG 1 cut(s) 877
MspI CCGG 1 cut(s) 759
MspR9I CCNGG 2 cut(s) 759, 1344
MunI CAATTG 2 cut(s) 102, 149
MvaI CCWGG 1 cut(s) 1344
MvnI CGCG 2 cut(s) 179, 1701
MwoI GCNNNNNNNGC 2 cut(s) 174, 1408
NciI CCSGG 1 cut(s) 759
NdeII GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
NlaIII CATG 7 cut(s) 116, 127, 653, 944, 1238, 1589, 1652
NlaIV GGNNCC 5 cut(s) 232, 423, 693, 756, 1341
NruI TCGCGA 1 cut(s) 1701
NspI RCATGY 2 cut(s) 127, 944
PaeI GCATGC 1 cut(s) 944
PceI AGGCCT 1 cut(s) 136
PfeI GAWTC 4 cut(s) 782, 1001, 1242, 1361
PkrI GCNGC 1 cut(s) 825
PleI GAGTC 1 cut(s) 1498
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
PpsI GAGTC 1 cut(s) 1498
Ppu21I YACGTR 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 1342
PspCI CACGTG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 1342
PspN4I GGNNCC 5 cut(s) 232, 423, 693, 756, 1341
PspPI GGNCC 2 cut(s) 231, 421
PspPPI RGGWCCY 1 cut(s) 421
PstI CTGCAG 1 cut(s) 934
RruI TCGCGA 1 cut(s) 1701
RsaI GTAC 4 cut(s) 621, 1020, 1509, 1694
RsaNI GTAC 4 cut(s) 620, 1019, 1508, 1693
SaqAI TTAA 5 cut(s) 878, 1185, 1556, 1565, 1595
SatI GCNGC 1 cut(s) 824
Sau3AI GATC 6 cut(s) 145, 1043, 1100, 1180, 1322, 1669
Sau96I GGNCC 2 cut(s) 231, 421
SchI GAGTC 1 cut(s) 1499
ScrFI CCNGG 2 cut(s) 759, 1344
SduI GDGCHC 3 cut(s) 603, 759, 891
SfaNI GCATC 6 cut(s) 86, 250, 454, 1107, 1308, 1596
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 2 cut(s) 231, 421
SmlI CTYRAG 2 cut(s) 877, 1673
SmoI CTYRAG 2 cut(s) 877, 1673
SpeI ACTAGT 1 cut(s) 811
SphI GCATGC 1 cut(s) 944
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 3 cut(s) 187, 297, 1525
SspMI CTAG 2 cut(s) 812, 1710
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 757, 1342
TaaI ACNGT 2 cut(s) 772, 886
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 919, 1245
TaqII GACCGA 1 cut(s) 531
TatI WGTACW 1 cut(s) 619
TfiI GAWTC 4 cut(s) 782, 1001, 1242, 1361
Tru1I TTAA 5 cut(s) 878, 1185, 1556, 1565, 1595
Tru9I TTAA 5 cut(s) 878, 1185, 1556, 1565, 1595
TscAI CASTG 4 cut(s) 747, 891, 1127, 1616
TseI GCWGC 1 cut(s) 823
TspDTI ATGAA 9 cut(s) 500, 588, 687, 885, 1074, 1323, 1563, 1574, 1637
TspGWI ACGGA 1 cut(s) 1125
TspRI CASTG 4 cut(s) 747, 891, 1127, 1616
Vha464I CTTAAG 1 cut(s) 877
VpaK11BI GGWCC 2 cut(s) 231, 421
XapI RAATTY 5 cut(s) 763, 1131, 1375, 1482, 1620
XceI RCATGY 2 cut(s) 127, 944
XspI CTAG 2 cut(s) 812, 1710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.