Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Forward (+)

38269556 .. 38272374

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCAGACGAAGAAGACCGGATGGAATTAGATGGATTCGTAATAGAGAAGTGTCTCACGTGCGGCGGCGGCGACGGTGACGATGGTATGAAAGTGGTGGCGTGTAGTGTGATCGGATGCCCGATTGGTATCCACGAGGAGTGTATGAGTTCCAACTCTGAGATTGATGACAAGGGCAGGTTCTACTGCCCTTATTGCGCTTACAAGAGGGCGCTGCTGAGGAAGATGAAGCTGCGAAAGAAGCGGGACCCACATGCGAAAGGTGGGAGTGACATTCCACAGTTGAACCAAACTGACAAAGTTACTGAGGTCCTGTCCGAGACAAGAAAAGTTCCAGACTCGAACCCAACTGAGAAAGCTGGCTCCTCTGCTGAACCAAGAAATGTTCCGGAATCTGGAAGTGAAGATTTGTTATTTCGTATTAGCAAGAGGAGGAAAGTTAACTGGACAGCTGCCGAGTTGGAAATGTTGGAGGCAGGAATACAAATATTTTCAGCCCAAGTAAAGAAAAATCTTCCTTGGAGGAGAATTTTGGAGTTGGGTAGGGATATTTTTCATGAGACTCGGACTCCAGATAATCTGAAGGATAAATGGAAGGTCCTGTGCAGAGAAGCCTCTAACAATAAACAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.82

Weight (kDa)

7.52

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	4 cut(s)	63, 66, 69, 244
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	602
AcvI	CACGTG	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	3 cut(s)	232, 359, 452
AluI	AGCT	3 cut(s)	232, 359, 452
Alw26I	GTCTC	3 cut(s)	59, 314, 554
Aor13HI	TCCGGA	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	214, 232, 452
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	200, 214
AspS9I	GGNCC	3 cut(s)	247, 310, 598
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	3 cut(s)	247, 310, 598
BauI	CACGAG	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	201, 219, 439
BccI	CCATC	3 cut(s)	16, 26, 77
BciVI	GTATCC	1 cut(s)	140
BcoDI	GTCTC	3 cut(s)	59, 314, 554
BfoI	RGCGCY	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	6 cut(s)	64, 67, 70, 215, 233, 453
BlsI	GCNGC	6 cut(s)	65, 68, 71, 216, 234, 454
Bme18I	GGWCC	3 cut(s)	247, 310, 598
BmgT120I	GGNCC	3 cut(s)	247, 310, 598
BmiI	GGNNCC	3 cut(s)	248, 249, 364
BmsI	GCATC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	2 cut(s)	18, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	2 cut(s)	27, 122
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	4 cut(s)	150, 209, 297, 342
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	4 cut(s)	152, 355, 445, 538
BseXI	GCAGC	3 cut(s)	201, 219, 439
BsgI	GTGCAG	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	19, 389
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	3 cut(s)	59, 314, 554
BsmFI	GGGAC	1 cut(s)	260
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	4 cut(s)	63, 66, 69, 244
BspCNI	CTCAG	4 cut(s)	151, 210, 298, 343
BspEI	TCCGGA	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	248, 249, 364
BspMI	ACCTGC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	77, 282
BstBAI	YACGTR	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	4 cut(s)	159, 218, 306, 351
BstF5I	GGATG	2 cut(s)	27, 122
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	200, 214
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	3 cut(s)	59, 314, 554
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 195, 241
BstNSI	RCATGY	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	201, 219, 439
BstV2I	GAAGAC	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	27, 122
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	2 cut(s)	200, 214
Cfr13I	GGNCC	3 cut(s)	247, 310, 598
CviAII	CATG	2 cut(s)	254, 557
CviJI	RGCY	6 cut(s)	232, 359, 363, 452, 497, 614
CviKI_1	RGCY	6 cut(s)	232, 359, 363, 452, 497, 614
DdeI	CTNAG	4 cut(s)	159, 218, 306, 351
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	518
Eco47I	GGWCC	3 cut(s)	247, 310, 598
Eco57I	CTGAAG	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	60
EcoO109I	RGGNCCY	3 cut(s)	247, 310, 598
EcoT14I	CCWWGG	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	2 cut(s)	257, 560
FaiI	YATR	4 cut(s)	89, 146, 255, 558
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	253, 556
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	6 cut(s)	64, 67, 70, 215, 233, 453
FokI	GGATG	2 cut(s)	34, 129
Fsp4HI	GCNGC	6 cut(s)	64, 67, 70, 215, 233, 453
GlaI	GCGC	2 cut(s)	199, 213
GluI	GCNGC	6 cut(s)	64, 67, 70, 215, 233, 453
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	215
HapII	CCGG	2 cut(s)	19, 389
HhaI	GCGC	2 cut(s)	200, 214
Hin1II	CATG	2 cut(s)	257, 560
Hin6I	GCGC	2 cut(s)	198, 212
HinP1I	GCGC	2 cut(s)	198, 212
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	5 cut(s)	36, 338, 392, 562, 568
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	19, 389
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	6 cut(s)	7, 116, 160, 319, 567, 582
Hpy188III	TCNNGA	5 cut(s)	335, 389, 396, 557, 572
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	577, 589
HpyCH4III	ACNGT	2 cut(s)	77, 282
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 195, 241
HpyF3I	CTNAG	4 cut(s)	159, 218, 306, 351
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	257, 560
HspAI	GCGC	2 cut(s)	198, 212
KflI	GGGWCCC	1 cut(s)	247
Kpn2I	TCCGGA	1 cut(s)	388
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	3 cut(s)	201, 219, 439
LweI	GCATC	1 cut(s)	107
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	3 cut(s)	77, 269, 301
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	5 cut(s)	23, 26, 235, 416, 506
MluCI	AATT	2 cut(s)	26, 528
MlyI	GAGTC	3 cut(s)	332, 556, 562
MmeI	TCCRAC	3 cut(s)	177, 441, 450
MroI	TCCGGA	1 cut(s)	388
MseI	TTAA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	2 cut(s)	19, 389
MwoI	GCNNNNNNNGC	3 cut(s)	69, 195, 241
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	257, 560
NlaIV	GGNNCC	3 cut(s)	248, 249, 364
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	2 cut(s)	77, 269
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	36, 392
PkrI	GCNGC	6 cut(s)	65, 68, 71, 216, 234, 454
PleI	GAGTC	3 cut(s)	332, 556, 562
PmaCI	CACGTG	1 cut(s)	60
PmlI	CACGTG	1 cut(s)	60
PpsI	GAGTC	3 cut(s)	332, 556, 562
Ppu21I	YACGTR	1 cut(s)	60
PpuMI	RGGWCCY	3 cut(s)	247, 310, 598
Psp5II	RGGWCCY	3 cut(s)	247, 310, 598
PspCI	CACGTG	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	248, 249, 364
PspPI	GGNCC	3 cut(s)	247, 310, 598
PspPPI	RGGWCCY	3 cut(s)	247, 310, 598
PvuII	CAGCTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	6 cut(s)	64, 67, 70, 215, 233, 453
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	3 cut(s)	247, 310, 598
SchI	GAGTC	3 cut(s)	332, 556, 562
SetI	ASST	8 cut(s)	62, 182, 234, 265, 312, 361, 454, 600
SfaNI	GCATC	1 cut(s)	107
SinI	GGWCC	3 cut(s)	247, 310, 598
Sse9I	AATT	2 cut(s)	26, 528
SsiI	CCGC	4 cut(s)	63, 66, 69, 244
SspI	AATATT	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	2 cut(s)	77, 282
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	26, 528
TauI	GCSGC	3 cut(s)	66, 69, 72
TfiI	GAWTC	2 cut(s)	36, 392
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseFI	GTSAC	2 cut(s)	77, 269
TseI	GCWGC	3 cut(s)	214, 232, 452
Tsp45I	GTSAC	2 cut(s)	77, 269
TspDTI	ATGAA	3 cut(s)	104, 242, 545
VpaK11BI	GGWCC	3 cut(s)	247, 310, 598
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.