Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Forward (+)

74041993 .. 74044161

Gene Structure 2169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG512600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGAGCCCTAATTCAAACCGAGAAACAATGTTAGATGAAGAAGACTCCATGGAATTAGATAGCTTAGTGGTAGAGAAATGCCTTAGGTGTAGCGGCGATTGTGCTAGGGGAAAATTGCTAGTGTGTAGTGTGATTGGGTGCCCGATTGCTGTTCATGAGGAGTGTATGTGTTGTAAGCCTGAAATTGATGAGAAGGGAAGGTTCTACTGCCCTTACTGTGCTTACAAGAGAGCGTTGGTGCGGGAAGAGAAGCTGAGGAGGAAGGCACTGCAGGCTAAGGAGGTTCTGTCCATGTTTATCGATAGCGGTAGGGTTAATTTTTTGGTGAATGATGGAGAGGGGAGTAGTGGCAACGGGGGAGGTGAAGGCACAGCAGCAGGCATTGGGGCGGTTCGGGATGAGGTGACAGTAGGCAGAGGGATGGATGGTGGCGAAACTGAGGATCGGTCTATGGAAGTAGATGAAAATGGACACGGGGAGATGGATGAGAATGTGAGTAAGGGAAATTCGGACCAACAATGTGTGTTGGAGAGGCGTGAGTTTGATAAGAGAAATGAAGATGATGCAGTTGATGGAATTGACCGAGGAGATGGGGATAGTATAAGGGGGAATGAGGAGAATGAAGGCAAAAGTCCGGGGGAAGAACTGATGCGACCAGAGGCAATGGAGGTGCCTGCAGATGACACTGTTGTGCCTGAATCTGGTGATTTCCAGAGTGGTTCTCCTCTATTGCGTAAGAGGCGTTATAAACAAAGAGCTCAAAAGATATTGCAGCTTCCGTATGCCGTTCCAGTAAGGATTGTGCCTTCTCCATCAACAAAATCATCCTCTTGCCAAACTGATGCTGTAGAGGAGGATGCCGAGAAGCAAAGTGAGAAAGATGCTACCTCCTATTCCTCTGAGTCTAGAAAAGTTTCATCAGACCAAAATGTGGAAGGTACCATCTCCTCCAAGTCAAGAGACATTCCAGAGTCAAACCCAAATCAGAAAGCTACTACCTCCTCCAAGTCCAGAAAAAGTCCAGAGTCGAACCAAAATGGGAAAGTTACTACATCCTGCTTTGAGTCAAGAAAAGTTCCAGAATCAAACCAAAATGAGAAAGCTACCACCTCCGTGTCCTCTGAGTCAAGAGAAATTCCAGAGCCAAACCAAAATGAGAAAGCTACTACCGCTTTCTCCAAGTCAAGAAAAGATAGAGACTCGAACCACAATGGGAAAACTACTACCTCCTCCACTGAACCAATAAAAGTTCCGGAATCTGAAAGTGAAGAATTGTTATTTCATAATGCCAAGCGGAGGAAAATTAAGTGGACAGCTGAAGAGTTAAAAATGTTAAAGGATGGGGTACGACTATTTTCAGCCCAAGTAAACAAAAATCTTCCCTGGAGGAAAATTTTGGAACTTGGTAAGGCTGTTTTTCACGAGACTCGGACTCCAGATAATCTTAAGGATAAATGGAAGCTCCTGAGCAGAGAAGCATCTAACAAAAAACAAAATCACTTGGACTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

504

Amino Acids

55.98

Weight (kDa)

5.46

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
Acc65I	GGTACC	1 cut(s)	938
AccB1I	GGYRCC	3 cut(s)	138, 670, 938
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccIII	TCCGGA	1 cut(s)	1252
AciI	CCGC	6 cut(s)	93, 241, 306, 389, 1170, 1294
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	505, 1134, 1392
AcuI	CTGAAG	1 cut(s)	1338
AfaI	GTAC	2 cut(s)	940, 1347
AfiI	CCNNNNNNNGG	3 cut(s)	701, 931, 1296
AflII	CTTAAG	1 cut(s)	1445
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	1382
AleI	CACNNNNGTG	2 cut(s)	689, 1112
AluBI	AGCT	9 cut(s)	63, 253, 758, 775, 992, 1103, 1163, 1316, 1462
AluI	AGCT	9 cut(s)	63, 253, 758, 775, 992, 1103, 1163, 1316, 1462
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	3 cut(s)	954, 1191, 1418
AlwI	GGATC	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	1252
ApeKI	GCWGC	2 cut(s)	374, 772
ApoI	RAATTY	3 cut(s)	505, 1134, 1392
Asp700I	GAANNNNTTC	1 cut(s)	913
Asp718I	GGTACC	1 cut(s)	938
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	4 cut(s)	337, 374, 415, 716
AvaII	GGWCC	1 cut(s)	511
AxyI	CCTNAGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	143
BanI	GGYRCC	3 cut(s)	138, 670, 938
BanII	GRGCYC	2 cut(s)	8, 760
BauI	CACGAG	1 cut(s)	1421
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	760
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	386, 784
BccI	CCATC	9 cut(s)	326, 415, 419, 475, 566, 584, 820, 950, 1334
BceAI	ACGGC	1 cut(s)	770
BciT130I	CCWGG	1 cut(s)	1384
BcnI	CCSGG	1 cut(s)	636
BcoDI	GTCTC	3 cut(s)	954, 1191, 1418
BfaI	CTAG	3 cut(s)	105, 119, 906
BfmI	CTRYAG	3 cut(s)	269, 675, 846
BfrI	CTTAAG	1 cut(s)	1445
BisI	GCNGC	3 cut(s)	94, 375, 773
BlsI	GCNGC	3 cut(s)	95, 376, 774
Bme1390I	CCNGG	2 cut(s)	636, 1384
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	3 cut(s)	140, 672, 940
BmrFI	CCNGG	2 cut(s)	636, 1384
BmsI	GCATC	6 cut(s)	553, 639, 832, 847, 871, 1487
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpmI	CTGGAG	2 cut(s)	1405, 1419
Bpu10I	CCTNAGC	3 cut(s)	254, 276, 1466
BpuMI	CCSGG	1 cut(s)	636
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	48, 583, 635, 1382
BsaWI	WCCGGW	1 cut(s)	1252
BsaXI	ACNNNNNCTCC	7 cut(s)	152, 182, 272, 302, 1417, 1447, 1490
Bsc4I	CCNNNNNNNGG	3 cut(s)	701, 931, 1296
Bse1I	ACTGG	1 cut(s)	791
Bse21I	CCTNAGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	1252
BseBI	CCWGG	1 cut(s)	1384
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	4 cut(s)	48, 583, 635, 1382
BseGI	GGATG	8 cut(s)	403, 426, 430, 490, 824, 862, 1052, 1345
BseLI	CCNNNNNNNGG	3 cut(s)	701, 931, 1296
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	5 cut(s)	245, 429, 891, 1113, 1457
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	9 cut(s)	173, 271, 600, 629, 714, 866, 937, 991, 1219
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	386, 784
BshNI	GGYRCC	3 cut(s)	138, 670, 938
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	2 cut(s)	635, 1253
BslI	CCNNNNNNNGG	3 cut(s)	701, 931, 1296
BsmAI	GTCTC	3 cut(s)	954, 1191, 1418
Bsp1286I	GDGCHC	3 cut(s)	8, 143, 760
Bsp13I	TCCGGA	1 cut(s)	1252
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	6 cut(s)	93, 241, 306, 389, 1170, 1294
BspCNI	CTCAG	5 cut(s)	246, 430, 892, 1114, 1458
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	1252
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	140, 672, 940
BspMAI	CTGCAG	2 cut(s)	273, 679
BspPI	GGATC	1 cut(s)	450
BspT107I	GGYRCC	3 cut(s)	138, 670, 938
BspTI	CTTAAG	1 cut(s)	1445
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	4 cut(s)	48, 583, 635, 1382
BssMI	GATC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	1421
BssT1I	CCWWGG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	1421
Bst2UI	CCWGG	1 cut(s)	1384
Bst4CI	ACNGT	3 cut(s)	218, 409, 688
Bst6I	CTCTTC	2 cut(s)	240, 1314
BstAFI	CTTAAG	1 cut(s)	1445
BstC8I	GCNNGC	3 cut(s)	273, 379, 675
BstDEI	CTNAG	8 cut(s)	64, 83, 254, 276, 438, 900, 1122, 1466
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	8 cut(s)	403, 426, 430, 490, 824, 862, 1052, 1345
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	3 cut(s)	954, 1191, 1418
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 739, 1169
BstNI	CCWGG	1 cut(s)	1384
BstSCI	CCNGG	2 cut(s)	634, 1382
BstSFI	CTRYAG	3 cut(s)	269, 675, 846
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	386, 784
BstV2I	GAAGAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	8 cut(s)	403, 426, 430, 490, 824, 862, 1052, 1345
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	3 cut(s)	266, 684, 1233
Cac8I	GCNNGC	3 cut(s)	273, 379, 675
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	939, 1346
CviAII	CATG	3 cut(s)	49, 155, 292
CviQI	GTAC	2 cut(s)	939, 1346
DdeI	CTNAG	8 cut(s)	64, 83, 254, 276, 438, 900, 1122, 1466
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	240, 1314
EarI	CTCTTC	2 cut(s)	240, 1314
Ecl136II	GAGCTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	8, 760
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	1338
Eco81I	CCTNAGG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	1382
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	8, 760
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	52, 158, 295
FaiI	YATR	9 cut(s)	50, 156, 167, 293, 452, 602, 747, 783, 1284
FatI	CATG	3 cut(s)	48, 154, 291
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	94, 375, 773
FokI	GGATG	8 cut(s)	410, 433, 437, 497, 811, 869, 1039, 1352
FriOI	GRGCYC	2 cut(s)	8, 760
Fsp4HI	GCNGC	3 cut(s)	94, 375, 773
FspBI	CTAG	3 cut(s)	105, 119, 906
GluI	GCNGC	3 cut(s)	94, 375, 773
GsuI	CTGGAG	2 cut(s)	1405, 1419
HapII	CCGG	2 cut(s)	635, 1253
Hin1II	CATG	3 cut(s)	52, 158, 295
HpaII	CCGG	2 cut(s)	635, 1253
HphI	GGTGA	4 cut(s)	337, 374, 415, 716
Hpy166II	GTNNAC	2 cut(s)	1311, 1369
Hpy188I	TCNGA	7 cut(s)	511, 901, 922, 987, 1123, 1261, 1431
Hpy8I	GTNNAC	2 cut(s)	1311, 1369
HpyAV	CCTTC	7 cut(s)	187, 192, 256, 359, 617, 816, 929
HpyCH4III	ACNGT	3 cut(s)	218, 409, 688
HpyCH4V	TGCA	4 cut(s)	271, 566, 677, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 739, 1169
HpyF3I	CTNAG	8 cut(s)	64, 83, 254, 276, 438, 900, 1122, 1466
Hsp92II	CATG	3 cut(s)	52, 158, 295
Kpn2I	TCCGGA	1 cut(s)	1252
KpnI	GGTACC	1 cut(s)	942
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	1 cut(s)	1467
Lsp1109I	GCAGC	2 cut(s)	386, 784
LweI	GCATC	6 cut(s)	553, 639, 832, 847, 871, 1487
MaeI	CTAG	3 cut(s)	105, 119, 906
MaeIII	GTNAC	2 cut(s)	403, 1045
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	8 cut(s)	50, 53, 257, 569, 653, 1280, 1331, 1370
MhlI	GDGCHC	3 cut(s)	8, 143, 760
MmeI	TCCRAC	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	1252
MroXI	GAANNNNTTC	1 cut(s)	913
MseI	TTAA	5 cut(s)	315, 1305, 1325, 1334, 1446
MslI	CAYNNNNRTG	2 cut(s)	689, 1112
MspA1I	CMGCKG	1 cut(s)	1316
MspCI	CTTAAG	1 cut(s)	1445
MspI	CCGG	2 cut(s)	635, 1253
MspR9I	CCNGG	2 cut(s)	636, 1384
MvaI	CCWGG	1 cut(s)	1384
MwoI	GCNNNNNNNGC	3 cut(s)	272, 739, 1169
NciI	CCSGG	1 cut(s)	636
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	52, 158, 295
NlaIV	GGNNCC	3 cut(s)	140, 672, 940
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	403
OliI	CACNNNNGTG	2 cut(s)	689, 1112
PagI	TCATGA	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	913
PfeI	GAWTC	3 cut(s)	698, 1082, 1256
PflMI	CCANNNNNTGG	1 cut(s)	931
PkrI	GCNGC	3 cut(s)	95, 376, 774
PsiI	TTATAA	1 cut(s)	747
Psp124BI	GAGCTC	1 cut(s)	760
Psp6I	CCWGG	1 cut(s)	1382
PspGI	CCWGG	1 cut(s)	1382
PspN4I	GGNNCC	3 cut(s)	140, 672, 940
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	2 cut(s)	273, 679
PvuII	CAGCTG	1 cut(s)	1316
RsaI	GTAC	2 cut(s)	940, 1347
RsaNI	GTAC	2 cut(s)	939, 1346
RseI	CAYNNNNRTG	2 cut(s)	689, 1112
SacI	GAGCTC	1 cut(s)	760
SaqAI	TTAA	5 cut(s)	315, 1305, 1325, 1334, 1446
SatI	GCNGC	3 cut(s)	94, 375, 773
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	636, 1384
SduI	GDGCHC	3 cut(s)	8, 143, 760
SfaNI	GCATC	6 cut(s)	553, 639, 832, 847, 871, 1487
SfcI	CTRYAG	3 cut(s)	269, 675, 846
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	689, 1112
SmlI	CTYRAG	1 cut(s)	1445
SmoI	CTYRAG	1 cut(s)	1445
SsiI	CCGC	6 cut(s)	93, 241, 306, 389, 1170, 1294
SspMI	CTAG	3 cut(s)	105, 119, 906
SstI	GAGCTC	1 cut(s)	760
StyD4I	CCNGG	2 cut(s)	634, 1382
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	3 cut(s)	218, 409, 688
TaqI	TCGA	3 cut(s)	300, 1028, 1202
TaqII	GACCGA	2 cut(s)	435, 597
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	698, 1082, 1256
Tru1I	TTAA	5 cut(s)	315, 1305, 1325, 1334, 1446
Tru9I	TTAA	5 cut(s)	315, 1305, 1325, 1334, 1446
TscAI	CASTG	3 cut(s)	273, 691, 1240
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	374, 772
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	7 cut(s)	51, 143, 477, 570, 636, 906, 1271
TspGWI	ACGGA	2 cut(s)	768, 1102
TspRI	CASTG	3 cut(s)	273, 691, 1240
Van91I	CCANNNNNTGG	1 cut(s)	931
Vha464I	CTTAAG	1 cut(s)	1445
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	3 cut(s)	505, 1134, 1392
XbaI	TCTAGA	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	913
XspI	CTAG	3 cut(s)	105, 119, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.