Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006467

Physical Location & Seq

Genomic Coordinates Forward (+)

69190384 .. 69192520

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAATAGATAGCTTAGTGGTAGAGAAATGCCTTAGGTGTAGCGGCGATTGTGCTAGTGGAAAATTGCTAGTTTGTTGTGTGATTGGGTGCCCAATTTCTGTTCATGAGGAGTGTATGTGTTGTAAGCCTGAAATTGATGAGAAGGGAAGGTTCTACTGCCCTTACTGTGCTTACAAGAGAGCGTTGGTGCGGGAAGAGAAGCTGAGGAGGAAGGCAATGCAGGCTAAGGAGGTTCTGTCCATGTTTATTGATAGCGGTAGGGTTAATTTTCCGGTGAATGATGGCAGTTGGGTGAGGAATGGAGGAGAAGATGGTAGAGGTGAAGGCACAGCAGCAGGCATTGGGGCGGTTCGGGATGAGATGACAGTAGGAAGAGGGATGGATGGTGGCGAAACTGAGGATCGATCTATGGAAGTAGAAGAAAATGGACACGGGGAAATGGATGAGAATGTGAGTAATGGAAATTCGGACCAACAATGTGTGTTGGAGAGGCGTGAGTTTGATAAGAGAAATGAAGATGACGCAGTTGATGGAATTGACCGAGGAGATGGGGATAGTATAAGGGGGAATGAGGAGAATGATGGAAAAAGTCCGGGAGAAGAAGAAATGCAACCAGAAGCAATGGAGGTGCCTGCAGATGACACTGTTGTGCCTGAATCTGGTGATTTCCAGAGTGGTTCTCCTCTATTGCGTAAGAGGCGTTATAAACAAAGAGCTCAAAAGATAGTGCAGCTTCCTGAAGAATTGTTATTTCATAATGCCAAAAGGAGGAAAATTAAGTGGACAGCTGAAGAGTTAAAAATGTTAAAGGATGGGGTACGACTATTTTCAGCCCAAGTAAACAAAAATCTTCCCTGGAGGAAAATTTTGGAACTTGGTAAGGCTGTTTTTCACGAGACTCGGACGCCAGATAATCTTAAGGATAAATGGAAGCTCCTGAGCAGAGAAGCATCTAACAAAAAACAAAATCACTTGGACTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

330

Amino Acids

37.09

Weight (kDa)

5.38

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01150 AT1G01150 AT1G01150 AT5G03780 AT5G03780 AT5G03780
fragaria_vesca	FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g40210 FvH4_6g51680
malus_domestica	MD09G1134000.v1.1
prunus_persica	Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1 Prupe.3G192500_v2.0.a1
pyrus_communis	pycom09g05530
rosa_chinensis	RchiOBHm_Chr2g0155231
rosa_laevigata	RLG00000020828
rosa_multiflora	Rmu_sc0012066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00093850
rosa_rugosa	Rorug02G0446200
rosa_samantha	Rh2AG512600 Rh2BG523200 Rh2CG497600 Rh2DG532900
rosa_wichuraiana	Rw2G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AccB1I	GGYRCC	2 cut(s)	90, 631
AciI	CCGC	4 cut(s)	45, 193, 258, 350
AclWI	GGATC	1 cut(s)	411
AcsI	RAATTY	2 cut(s)	466, 867
AcuI	CTGAAG	2 cut(s)	762, 813
AcyI	GRCGYC	1 cut(s)	908
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	2 cut(s)	662, 771
AflII	CTTAAG	1 cut(s)	920
AjnI	CCWGG	1 cut(s)	857
AleI	CACNNNNGTG	1 cut(s)	650
AluBI	AGCT	6 cut(s)	15, 205, 719, 736, 791, 937
AluI	AGCT	6 cut(s)	15, 205, 719, 736, 791, 937
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	1 cut(s)	893
AlwI	GGATC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	335, 733
ApoI	RAATTY	2 cut(s)	466, 867
AspS9I	GGNCC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	4 cut(s)	289, 307, 335, 677
AvaII	GGWCC	1 cut(s)	472
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	2 cut(s)	90, 631
BanII	GRGCYC	1 cut(s)	721
BauI	CACGAG	1 cut(s)	896
Bbv12I	GWGCWC	1 cut(s)	721
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	347, 745
BccI	CCATC	8 cut(s)	278, 308, 376, 380, 527, 545, 578, 809
BciT130I	CCWGG	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	2 cut(s)	57, 71
BfmI	CTRYAG	1 cut(s)	636
BfrI	CTTAAG	1 cut(s)	920
BisI	GCNGC	3 cut(s)	46, 336, 734
BlsI	GCNGC	3 cut(s)	47, 337, 735
Bme1390I	CCNGG	2 cut(s)	597, 859
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	92, 633
BmrFI	CCNGG	2 cut(s)	597, 859
BmsI	GCATC	1 cut(s)	962
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
BpmI	CTGGAG	1 cut(s)	880
Bpu10I	CCTNAGC	3 cut(s)	206, 228, 941
BpuMI	CCSGG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	908
BsaJI	CCNNGG	2 cut(s)	544, 857
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	5 cut(s)	104, 134, 224, 254, 965
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 771
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	2 cut(s)	225, 630
BseBI	CCWGG	1 cut(s)	859
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	544, 857
BseGI	GGATG	5 cut(s)	364, 387, 391, 451, 820
BseLI	CCNNNNNNNGG	2 cut(s)	662, 771
BseMI	GCAATG	2 cut(s)	225, 630
BseMII	CTCAG	3 cut(s)	197, 390, 932
BseRI	GAGGAG	6 cut(s)	125, 223, 321, 561, 590, 675
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	347, 745
BsgI	GTGCAG	1 cut(s)	752
BshNI	GGYRCC	2 cut(s)	90, 631
BshVI	ATCGAT	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	2 cut(s)	275, 596
BslI	CCNNNNNNNGG	2 cut(s)	662, 771
BsmAI	GTCTC	1 cut(s)	893
Bsp1286I	GDGCHC	2 cut(s)	95, 721
Bsp143I	GATC	2 cut(s)	403, 407
BspACI	CCGC	4 cut(s)	45, 193, 258, 350
BspCNI	CTCAG	3 cut(s)	198, 391, 933
BspDI	ATCGAT	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	92, 633
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	411
BspT107I	GGYRCC	2 cut(s)	90, 631
BspTI	CTTAAG	1 cut(s)	920
BsrDI	GCAATG	2 cut(s)	225, 630
BssECI	CCNNGG	2 cut(s)	544, 857
BssMI	GATC	2 cut(s)	403, 407
BssNI	GRCGYC	1 cut(s)	908
BssSI	CACGAG	1 cut(s)	896
Bst2BI	CACGAG	1 cut(s)	896
Bst2UI	CCWGG	1 cut(s)	859
Bst4CI	ACNGT	3 cut(s)	170, 370, 649
Bst6I	CTCTTC	3 cut(s)	192, 370, 789
BstACI	GRCGYC	1 cut(s)	908
BstAFI	CTTAAG	1 cut(s)	920
BstC8I	GCNNGC	3 cut(s)	225, 340, 636
BstDEI	CTNAG	6 cut(s)	16, 35, 206, 228, 399, 941
BstF5I	GGATG	5 cut(s)	364, 387, 391, 451, 820
BstKTI	GATC	2 cut(s)	406, 410
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	2 cut(s)	403, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 700
BstNI	CCWGG	1 cut(s)	859
BstSCI	CCNGG	2 cut(s)	595, 857
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	347, 745
Bsu15I	ATCGAT	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	406
BtsCI	GGATG	5 cut(s)	364, 387, 391, 451, 820
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	225, 340, 636
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	472
ClaI	ATCGAT	1 cut(s)	406
CseI	GACGC	2 cut(s)	533, 916
Csp6I	GTAC	1 cut(s)	821
CviAII	CATG	2 cut(s)	107, 244
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	6 cut(s)	16, 35, 206, 228, 399, 941
DpnI	GATC	2 cut(s)	405, 409
DpnII	GATC	2 cut(s)	403, 407
Eam1104I	CTCTTC	3 cut(s)	192, 370, 789
EarI	CTCTTC	3 cut(s)	192, 370, 789
Ecl136II	GAGCTC	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	719
Eco57I	CTGAAG	2 cut(s)	762, 813
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	857
EcoT38I	GRGCYC	1 cut(s)	721
FaeI	CATG	2 cut(s)	110, 247
FaiI	YATR	7 cut(s)	108, 119, 245, 413, 563, 708, 759
FatI	CATG	2 cut(s)	106, 243
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	46, 336, 734
FokI	GGATG	5 cut(s)	371, 394, 398, 458, 827
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	3 cut(s)	46, 336, 734
FspBI	CTAG	2 cut(s)	57, 71
GluI	GCNGC	3 cut(s)	46, 336, 734
GsuI	CTGGAG	1 cut(s)	880
HapII	CCGG	2 cut(s)	275, 596
HgaI	GACGC	2 cut(s)	533, 916
Hin1I	GRCGYC	1 cut(s)	908
Hin1II	CATG	2 cut(s)	110, 247
HinfI	GANTC	3 cut(s)	659, 901, 980
HpaII	CCGG	2 cut(s)	275, 596
HphI	GGTGA	4 cut(s)	289, 307, 335, 677
Hpy166II	GTNNAC	2 cut(s)	786, 844
Hpy188I	TCNGA	2 cut(s)	472, 906
Hpy188III	TCNNGA	6 cut(s)	107, 356, 673, 740, 896, 940
Hpy8I	GTNNAC	2 cut(s)	786, 844
HpyAV	CCTTC	4 cut(s)	139, 144, 208, 320
HpyCH4III	ACNGT	3 cut(s)	170, 370, 649
HpyCH4V	TGCA	4 cut(s)	223, 613, 638, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 700
HpyF3I	CTNAG	6 cut(s)	16, 35, 206, 228, 399, 941
Hsp92I	GRCGYC	1 cut(s)	908
Hsp92II	CATG	2 cut(s)	110, 247
Kzo9I	GATC	2 cut(s)	403, 407
LmnI	GCTCC	1 cut(s)	942
Lsp1109I	GCAGC	2 cut(s)	347, 745
LweI	GCATC	1 cut(s)	962
MaeI	CTAG	2 cut(s)	57, 71
MalI	GATC	2 cut(s)	405, 409
MboI	GATC	2 cut(s)	403, 407
MhlI	GDGCHC	2 cut(s)	95, 721
MluCI	AATT	9 cut(s)	65, 96, 135, 268, 466, 537, 746, 777, 867
MlyI	GAGTC	2 cut(s)	895, 974
MmeI	TCCRAC	1 cut(s)	468
MseI	TTAA	5 cut(s)	267, 780, 800, 809, 921
MslI	CAYNNNNRTG	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	791
MspCI	CTTAAG	1 cut(s)	920
MspI	CCGG	2 cut(s)	275, 596
MspR9I	CCNGG	2 cut(s)	597, 859
MvaI	CCWGG	1 cut(s)	859
MwoI	GCNNNNNNNGC	2 cut(s)	224, 700
NciI	CCSGG	1 cut(s)	597
NdeII	GATC	2 cut(s)	403, 407
NlaIII	CATG	2 cut(s)	110, 247
NlaIV	GGNNCC	2 cut(s)	92, 633
OliI	CACNNNNGTG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	3 cut(s)	47, 337, 735
PleI	GAGTC	2 cut(s)	895, 974
PpsI	GAGTC	2 cut(s)	895, 974
PsiI	TTATAA	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	857
PspGI	CCWGG	1 cut(s)	857
PspN4I	GGNNCC	2 cut(s)	92, 633
PspPI	GGNCC	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	721
SaqAI	TTAA	5 cut(s)	267, 780, 800, 809, 921
SatI	GCNGC	3 cut(s)	46, 336, 734
Sau3AI	GATC	2 cut(s)	403, 407
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	2 cut(s)	895, 974
ScrFI	CCNGG	2 cut(s)	597, 859
SduI	GDGCHC	2 cut(s)	95, 721
SfaNI	GCATC	1 cut(s)	962
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	9 cut(s)	65, 96, 135, 268, 466, 537, 746, 777, 867
SsiI	CCGC	4 cut(s)	45, 193, 258, 350
SspMI	CTAG	2 cut(s)	57, 71
SstI	GAGCTC	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	595, 857
TaaI	ACNGT	3 cut(s)	170, 370, 649
TaqI	TCGA	1 cut(s)	406
TaqII	GACCGA	1 cut(s)	558
TasI	AATT	9 cut(s)	65, 96, 135, 268, 466, 537, 746, 777, 867
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	5 cut(s)	267, 780, 800, 809, 921
Tru9I	TTAA	5 cut(s)	267, 780, 800, 809, 921
TscAI	CASTG	1 cut(s)	652
TseI	GCWGC	2 cut(s)	335, 733
TspDTI	ATGAA	3 cut(s)	95, 531, 746
TspRI	CASTG	1 cut(s)	652
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	2 cut(s)	466, 867
XspI	CTAG	2 cut(s)	57, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.