AT1G01430

trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012827
Physical Location & Seq
Reverse (-)
156477 .. 158823
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01430.1

Sequence Viewer

Length: 1371 bp
ATGGATTCATTGAGATTAATATCTAAGAGCATCAAGATTGAAGGAACCCCATTTGGTTCCTCTCACCAACGCAATCAAATTTTCCTCAAATCCGTCGCTTTCTTCCTTTTGATCGGTCTCGCTTACCGTTTTCTCATCACTAATTCCACCGTCTCTCCGGTTCCCACCGTTCGATCCTCGCCGGAATCTCTCCCGCCGGATCCTTCAGGTCTCACTGCCATCACTCAAACTTCAGCCTCTGTCGATTCCCCAGCAAACATCACAACCATTGCTTCACAGAATGTTTCAACCAAGTGTGATATCTTTATCGGGAATTGGGTACCAGACCCATCAGGGCCAATCTACACCAATGTCTCTTGCCGTCATATCCAAGATTACCAAAATTGCTTGAAAAACGGAAGGCCAGATGTGAATTACCTTCGATGGAGATGGCAACCTCGCGATTGCGATCTCCCGAGGTTTAACCCTGAGCAATTCCTTGACAATATGAGGAACAAATGGTTGGCTTTTATCGGTGATTCCATCTCTCGTAACCATGTCCAATCCCTCCTCTGCATTCTCTCTCAGGTAGAAGAAGTAGAAGATATCTTCCATGACAAGGAATACAAATCAAGGATCTGGAGATTCCCTTCTTACAACTTCACACTCTCTGTCATTTGGTCTCCTTTCCTTGTAAAAGCTGAAACCTTTGAGAACGGAGTTCCTTTCTCAGACATTCGAGTACACCTCGACAAGCTAGACCAGAAATGGACTGATCAGTACATCAATTTCGACTACGTTGTCATCTCCGGTGGAAAATGGTTCCTCAAAACAACAATCTTCCATGAAAACAACACCGTAACCGGATGCCATTACTGCCAAGGGAAGAACAATATGACCGAACTCGGTTATCTATACTCGTACCGAAAGGTTCTTCATTTGGTTTTAGACTTTGTCGCTGAACCGAACCATAAAGCTCAGGTTCTCTTCAGAACAACAACACCTGATCATTTCGAGAATGGAGAGTGGGACTCTGGTGGTTTCTGTAACCGAACAATGCCGTTTACGGAAGGCAGCGAAGGAGAGATGAAGAGCGAGGATGTATCGATGCGTGATATCGAGCTTGAAGAGTTCTATAAGACTACTACTACACAACAAGAAGGTTCCAATTCAAACATTGTATTACTTGACACAACTTCAATGTCGCTTCTCCGACCAGATGGACATCCGGGACCGTACCGGTATCCAAATCCTTTCGCTGGGCTGAAGAACAAGGAGCTGAATCAGGTTCAGAACGATTGTCTTCATTGGTGCTTACCCGGTCCGATTGATTCATGGAATGATCTAATGGTCGAGGTGATGCTTAACCGGGAACGGCAAAGACGAGAATAG

Protein Analysis

456

Amino Acids

52.5

Weight (kDa)

5.78

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 98 - 150 4.9e-22 PMR5 N terminal Domain
PC-Esterase PF13839 151 - 445 4.1e-91 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01430 AT4G01080
fragaria_vesca FvH4_7g16070
malus_domestica MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica Prupe.2G184500_v2.0.a1
pyrus_communis pycom01g10610 pycom07g14580
rosa_chinensis RchiOBHm_Chr1g0359011
rosa_laevigata RLG00000027909
rosa_multiflora Rmu_sc0004044.1_g000006
rosa_roxburghii Rroxscaffold_4G00297460
rosa_rugosa Rorug01G0267100
rosa_samantha Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana Rw1G024930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccII CGCG 1 cut(s) 441
AciI CCGC 1 cut(s) 194
AclWI GGATC 4 cut(s) 168, 194, 207, 623
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 4 cut(s) 189, 216, 952, 1265
AfaI GTAC 5 cut(s) 321, 723, 761, 902, 1217
AfiI CCNNNNNNNGG 2 cut(s) 598, 1238
AgeI ACCGGT 1 cut(s) 1218
AgsI TTSAA 6 cut(s) 41, 288, 391, 1106, 1152, 1179
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 5 cut(s) 680, 736, 956, 1102, 1258
AluI AGCT 5 cut(s) 680, 736, 956, 1102, 1258
Alw26I GTCTC 5 cut(s) 122, 157, 215, 358, 666
AlwI GGATC 4 cut(s) 168, 194, 207, 623
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 454
AoxI GGCC 2 cut(s) 335, 401
ApeKI GCWGC 1 cut(s) 1053
ApoI RAATTY 1 cut(s) 78
AseI ATTAAT 1 cut(s) 17
AsiGI ACCGGT 1 cut(s) 1218
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 3 cut(s) 335, 1211, 1301
AsuC2I CCSGG 3 cut(s) 1209, 1299, 1349
AsuHPI GGTGA 3 cut(s) 56, 527, 1348
AvaI CYCGRG 1 cut(s) 454
AvaII GGWCC 2 cut(s) 1211, 1301
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 1274
BbvI GCAGC 1 cut(s) 1065
BccI CCATC 6 cut(s) 227, 337, 417, 423, 530, 1193
BceAI ACGGC 2 cut(s) 345, 1024
BciVI GTATCC 1 cut(s) 1233
BclI TGATCA 2 cut(s) 754, 985
BcnI CCSGG 3 cut(s) 1209, 1299, 1349
BcoDI GTCTC 5 cut(s) 122, 157, 215, 358, 666
BfaI CTAG 1 cut(s) 737
BfuI GTATCC 1 cut(s) 1233
BisI GCNGC 1 cut(s) 1054
BlsI GCNGC 1 cut(s) 1055
Bme1390I CCNGG 3 cut(s) 1209, 1299, 1349
Bme18I GGWCC 2 cut(s) 1211, 1301
BmeT110I CYCGRG 1 cut(s) 454
BmgT120I GGNCC 3 cut(s) 335, 1211, 1301
BmiI GGNNCC 8 cut(s) 46, 58, 162, 201, 321, 803, 1144, 1212
BmrFI CCNGG 3 cut(s) 1209, 1299, 1349
BmsI GCATC 4 cut(s) 39, 836, 1077, 1329
BpiI GAAGAC 1 cut(s) 1274
BplI GAGNNNNNCTC 4 cut(s) 711, 743, 995, 1027
BpmI CTGGAG 1 cut(s) 640
Bpu10I CCTNAGC 2 cut(s) 468, 957
BpuMI CCSGG 3 cut(s) 1209, 1299, 1349
Bsa29I ATCGAT 1 cut(s) 1085
BsaBI GATNNNNATC 3 cut(s) 19, 447, 1203
BsaI GGTCTC 3 cut(s) 122, 215, 666
BsaJI CCNNGG 2 cut(s) 455, 859
BsaWI WCCGGW 4 cut(s) 157, 788, 842, 1218
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 1238
Bse118I RCCGGY 1 cut(s) 1218
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 3 cut(s) 19, 447, 1203
BseCI ATCGAT 1 cut(s) 1085
BseDI CCNNGG 2 cut(s) 455, 859
BseGI GGATG 3 cut(s) 851, 1084, 1204
BseJI GATNNNNATC 3 cut(s) 19, 447, 1203
BseLI CCNNNNNNNGG 2 cut(s) 598, 1238
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 4 cut(s) 459, 578, 723, 971
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 1 cut(s) 1065
BseYI CCCAGC 2 cut(s) 250, 1238
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 2 cut(s) 337, 403
BshNI GGYRCC 1 cut(s) 319
BshTI ACCGGT 1 cut(s) 1218
BshVI ATCGAT 1 cut(s) 1085
BsiHKCI CYCGRG 1 cut(s) 454
BsiSI CCGG 9 cut(s) 158, 182, 197, 789, 843, 1208, 1219, 1299, 1348
BslFI GGGAC 2 cut(s) 1022, 1224
BslI CCNNNNNNNGG 2 cut(s) 598, 1238
BsmAI GTCTC 5 cut(s) 122, 157, 215, 358, 666
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 1022, 1224
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 2 cut(s) 337, 403
Bso31I GGTCTC 3 cut(s) 122, 215, 666
BsoBI CYCGRG 1 cut(s) 454
Bsp143I GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
Bsp68I TCGCGA 1 cut(s) 441
BspACI CCGC 1 cut(s) 194
BspANI GGCC 2 cut(s) 337, 403
BspCNI CTCAG 4 cut(s) 460, 577, 722, 970
BspDI ATCGAT 1 cut(s) 1085
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 8 cut(s) 46, 58, 162, 201, 321, 803, 1144, 1212
BspPI GGATC 4 cut(s) 168, 194, 207, 623
BspQI GCTCTTC 1 cut(s) 1064
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 3 cut(s) 122, 215, 666
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 1218
BssAI RCCGGY 1 cut(s) 1218
BssECI CCNNGG 2 cut(s) 455, 859
BssMI GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
BssT1I CCWWGG 1 cut(s) 859
Bst4CI ACNGT 5 cut(s) 128, 151, 169, 838, 1215
Bst6I CTCTTC 3 cut(s) 971, 1064, 1101
BstDEI CTNAG 5 cut(s) 24, 468, 564, 709, 957
BstF5I GGATG 3 cut(s) 851, 1084, 1204
BstFNI CGCG 1 cut(s) 441
BstKTI GATC 8 cut(s) 114, 176, 202, 451, 618, 757, 988, 1324
BstMAI GTCTC 5 cut(s) 122, 157, 215, 358, 666
BstMBI GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
BstMWI GCNNNNNNNGC 1 cut(s) 855
BstSCI CCNGG 3 cut(s) 1207, 1297, 1347
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 1065
BstV2I GAAGAC 1 cut(s) 1274
BstX2I RGATCY 2 cut(s) 199, 615
BstYI RGATCY 2 cut(s) 199, 615
Bsu15I ATCGAT 1 cut(s) 1085
BsuI GTATCC 1 cut(s) 1233
BsuRI GGCC 2 cut(s) 337, 403
BsuTUI ATCGAT 1 cut(s) 1085
BtsCI GGATG 3 cut(s) 851, 1084, 1204
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
BtuMI TCGCGA 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 1218
Cfr13I GGNCC 3 cut(s) 335, 1211, 1301
ClaI ATCGAT 1 cut(s) 1085
CpoI CGGWCCG 1 cut(s) 1301
Csp6I GTAC 5 cut(s) 320, 722, 760, 901, 1216
CspAI ACCGGT 1 cut(s) 1218
CspI CGGWCCG 1 cut(s) 1301
CviAII CATG 4 cut(s) 536, 593, 824, 1314
CviQI GTAC 5 cut(s) 320, 722, 760, 901, 1216
DdeI CTNAG 5 cut(s) 24, 468, 564, 709, 957
DpnI GATC 8 cut(s) 113, 175, 201, 450, 617, 756, 987, 1323
DpnII GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
Eam1104I CTCTTC 3 cut(s) 971, 1064, 1101
EarI CTCTTC 3 cut(s) 971, 1064, 1101
Eco130I CCWWGG 1 cut(s) 859
Eco31I GGTCTC 3 cut(s) 122, 215, 666
Eco32I GATATC 3 cut(s) 301, 586, 1096
Eco47I GGWCC 2 cut(s) 1211, 1301
Eco57I CTGAAG 4 cut(s) 189, 216, 952, 1265
Eco88I CYCGRG 1 cut(s) 454
EcoRV GATATC 3 cut(s) 301, 586, 1096
EcoT14I CCWWGG 1 cut(s) 859
ErhI CCWWGG 1 cut(s) 859
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 4 cut(s) 539, 596, 827, 1317
FaqI GGGAC 2 cut(s) 1022, 1224
FatI CATG 4 cut(s) 535, 592, 823, 1313
FauI CCCGC 1 cut(s) 201
FbaI TGATCA 2 cut(s) 754, 985
Fnu4HI GCNGC 1 cut(s) 1054
FokI GGATG 3 cut(s) 858, 1091, 1191
Fsp4HI GCNGC 1 cut(s) 1054
FspBI CTAG 1 cut(s) 737
GluI GCNGC 1 cut(s) 1054
GsaI CCCAGC 2 cut(s) 254, 1242
GsuI CTGGAG 1 cut(s) 640
HaeIII GGCC 2 cut(s) 337, 403
HapII CCGG 9 cut(s) 158, 182, 197, 789, 843, 1208, 1219, 1299, 1348
Hin1II CATG 4 cut(s) 539, 596, 827, 1317
HinfI GANTC 8 cut(s) 5, 185, 245, 518, 624, 1010, 1261, 1310
HpaII CCGG 9 cut(s) 158, 182, 197, 789, 843, 1208, 1219, 1299, 1348
HphI GGTGA 3 cut(s) 56, 527, 1348
Hpy166II GTNNAC 2 cut(s) 724, 1044
Hpy188I TCNGA 5 cut(s) 712, 971, 1193, 1272, 1305
Hpy188III TCNNGA 6 cut(s) 34, 310, 440, 454, 619, 994
Hpy8I GTNNAC 2 cut(s) 724, 1044
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 8 cut(s) 35, 213, 393, 428, 639, 1043, 1052, 1133
HpyCH4III ACNGT 5 cut(s) 128, 151, 169, 838, 1215
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 1 cut(s) 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 855
HpyF3I CTNAG 5 cut(s) 24, 468, 564, 709, 957
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 4 cut(s) 539, 596, 827, 1317
KpnI GGTACC 1 cut(s) 323
Ksp22I TGATCA 2 cut(s) 754, 985
Kzo9I GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
LguI GCTCTTC 1 cut(s) 1064
LmnI GCTCC 1 cut(s) 1255
Lsp1109I GCAGC 1 cut(s) 1065
LweI GCATC 4 cut(s) 39, 836, 1077, 1329
MaeI CTAG 1 cut(s) 737
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 3 cut(s) 530, 838, 1025
MalI GATC 8 cut(s) 113, 175, 201, 450, 617, 756, 987, 1323
MboI GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
MflI RGATCY 2 cut(s) 199, 615
MluCI AATT 8 cut(s) 78, 142, 313, 382, 412, 473, 766, 1147
MlyI GAGTC 1 cut(s) 1004
MmeI TCCRAC 1 cut(s) 1216
MseI TTAA 3 cut(s) 17, 462, 1344
MspI CCGG 9 cut(s) 158, 182, 197, 789, 843, 1208, 1219, 1299, 1348
MspR9I CCNGG 3 cut(s) 1209, 1299, 1349
Mva1269I GAATGC 1 cut(s) 555
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 855
NciI CCSGG 3 cut(s) 1209, 1299, 1349
NdeII GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
NlaIII CATG 4 cut(s) 539, 596, 827, 1317
NlaIV GGNNCC 8 cut(s) 46, 58, 162, 201, 321, 803, 1144, 1212
NruI TCGCGA 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 1064
PcsI WCGNNNNNNNCGW 1 cut(s) 1360
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 7 cut(s) 5, 185, 245, 518, 624, 1261, 1310
PflFI GACNNNGTC 1 cut(s) 932
PfoI TCCNGGA 1 cut(s) 1207
PinAI ACCGGT 1 cut(s) 1218
PkrI GCNGC 1 cut(s) 1055
PleI GAGTC 1 cut(s) 1004
PpsI GAGTC 1 cut(s) 1004
PshBI ATTAAT 1 cut(s) 17
PspFI CCCAGC 2 cut(s) 250, 1238
PspN4I GGNNCC 8 cut(s) 46, 58, 162, 201, 321, 803, 1144, 1212
PspPI GGNCC 3 cut(s) 335, 1211, 1301
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 2 cut(s) 199, 615
PsyI GACNNNGTC 1 cut(s) 932
RruI TCGCGA 1 cut(s) 441
RsaI GTAC 5 cut(s) 321, 723, 761, 902, 1217
RsaNI GTAC 5 cut(s) 320, 722, 760, 901, 1216
Rsr2I CGGWCCG 1 cut(s) 1301
RsrII CGGWCCG 1 cut(s) 1301
SapI GCTCTTC 1 cut(s) 1064
SaqAI TTAA 3 cut(s) 17, 462, 1344
SatI GCNGC 1 cut(s) 1054
Sau3AI GATC 8 cut(s) 111, 173, 199, 448, 615, 754, 985, 1321
Sau96I GGNCC 3 cut(s) 335, 1211, 1301
SchI GAGTC 1 cut(s) 1004
ScrFI CCNGG 3 cut(s) 1209, 1299, 1349
SfaNI GCATC 4 cut(s) 39, 836, 1077, 1329
SinI GGWCC 2 cut(s) 1211, 1301
Sse9I AATT 8 cut(s) 78, 142, 313, 382, 412, 473, 766, 1147
SsiI CCGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 3 cut(s) 1207, 1297, 1347
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 5 cut(s) 128, 151, 169, 838, 1215
TaiI ACGT 1 cut(s) 780
TaqII GACCGA 2 cut(s) 104, 893
TasI AATT 8 cut(s) 78, 142, 313, 382, 412, 473, 766, 1147
TatI WGTACW 2 cut(s) 721, 759
TfiI GAWTC 7 cut(s) 5, 185, 245, 518, 624, 1261, 1310
Tru1I TTAA 3 cut(s) 17, 462, 1344
Tru9I TTAA 3 cut(s) 17, 462, 1344
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 1053
TspDTI ATGAA 5 cut(s) 840, 905, 1082, 1274, 1302
TspGWI ACGGA 4 cut(s) 82, 411, 711, 1061
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 932
VpaK11BI GGWCC 2 cut(s) 1211, 1301
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 1 cut(s) 78
XspI CTAG 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.