Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004044.1

Orthogroup ID

OG0012827

Physical Location & Seq

Genomic Coordinates Forward (+)

47580 .. 49919

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004044.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1070 bp

atggtgaaggacatgaagtttgagtcctcatcatcaaacccattttcatcaccatcatcgttcctcaaacataatcatgtctttctgaagtttgcagtttgtttcctcttagtgggtttggcttttcgcttctcggattcgattcgattaatctcagtactacagccattgccaccttcaattgaaacagagcaagaaacagaggaaacagagtccaatgtttcttctttccttgctcaaacgcccacttctcctccaactatagattcacctccaactaatattacccagaactctgagaatgtaaaatgtgacattttcactggagaatgggtaccagatccatcagggccaagatacaacaacgagagctgccctgtgattgagtctcatcagaattgtatgaagaatggtcgccccgattcggcctacttttattggaggtggaatccaagagactgtgagcttcccaaattcaatgcacagagatttcttgctcttatgaggaacaagtcatgggcatttatcggggattcaatttctcgtaaccatgtccagtcattgctttgccttctctcccaggtggaacaagctgttgaggtataccatgacaaagagtacaggtctaagagatggctcttcccttctcacaacttcacactttcagtcatctggactcctttccttgtcaaagcagctacttttgaagacatgaatggaatttccacttcagagatccagctttatcttgacaaactcgataagacatggactgatcaatacaacagcttggattacctggtcatttccggtgggaaatggttccttaaaactgcgatatactatgaaaacgacacagtcagtggctgccattactgccccggaaagaacttaaccgagctaggatttgaacatgcctatcgcaatgctctccgcctggttttcaacttcatcaagggctcggatcataaagcatctgtattattcagaaccacgacgcctgaccactttgagaatggagagtggtttagtggagggtattgcaacagaacagtgccattcaaagaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

357

Amino Acids

40.99

Weight (kDa)

5.95

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01430 AT4G01080
fragaria_vesca	FvH4_7g16070
malus_domestica	MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica	Prupe.2G184500_v2.0.a1
pyrus_communis	pycom01g10610 pycom07g14580
rosa_chinensis	RchiOBHm_Chr1g0359011
rosa_laevigata	RLG00000027909
rosa_multiflora	Rmu_sc0004044.1_g000006
rosa_roxburghii	Rroxscaffold_4G00297460
rosa_rugosa	Rorug01G0267100
rosa_samantha	Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana	Rw1G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	1 cut(s)	934
AclWI	GGATC	3 cut(s)	335, 730, 972
AcsI	RAATTY	2 cut(s)	473, 720
AcuI	CTGAAG	2 cut(s)	107, 714
AcyI	GRCGYC	1 cut(s)	998
AfaI	GTAC	3 cut(s)	159, 336, 620
AfiI	CCNNNNNNNGG	2 cut(s)	112, 424
AgsI	TTSAA	8 cut(s)	180, 185, 478, 537, 707, 911, 946, 1063
AjnI	CCWGG	3 cut(s)	579, 798, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	7 cut(s)	372, 466, 593, 698, 742, 789, 901
AluI	AGCT	7 cut(s)	372, 466, 593, 698, 742, 789, 901
Alw26I	GTCTC	2 cut(s)	393, 450
AlwI	GGATC	3 cut(s)	335, 730, 972
AlwNI	CAGNNNCTG	1 cut(s)	867
AoxI	GGCC	2 cut(s)	350, 426
ApeKI	GCWGC	3 cut(s)	372, 695, 867
ApoI	RAATTY	2 cut(s)	473, 720
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	821
Asp718I	GGTACC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	882
AsuHPI	GGTGA	3 cut(s)	16, 42, 261
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	962
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	359, 707, 854
BccI	CCATC	3 cut(s)	61, 352, 627
BciT130I	CCWGG	3 cut(s)	581, 800, 938
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	2 cut(s)	393, 450
BfaI	CTAG	1 cut(s)	902
BfmI	CTRYAG	2 cut(s)	161, 261
BisI	GCNGC	3 cut(s)	373, 696, 868
BlsI	GCNGC	3 cut(s)	374, 697, 869
BmcAI	AGTACT	1 cut(s)	159
Bme1390I	CCNGG	4 cut(s)	581, 800, 882, 938
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	336, 824
BmrFI	CCNGG	4 cut(s)	581, 800, 882, 938
BmsI	GCATC	1 cut(s)	983
BpiI	GAAGAC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	998
BsaJI	CCNNGG	2 cut(s)	579, 880
BsaWI	WCCGGW	1 cut(s)	809
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 318, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 424
Bse1I	ACTGG	2 cut(s)	328, 556
Bse3DI	GCAATG	3 cut(s)	167, 560, 931
BseBI	CCWGG	3 cut(s)	581, 800, 938
BseDI	CCNNGG	2 cut(s)	579, 880
BseLI	CCNNNNNNNGG	2 cut(s)	112, 424
BseMI	GCAATG	3 cut(s)	167, 560, 931
BseMII	CTCAG	2 cut(s)	168, 288
BseNI	ACTGG	2 cut(s)	328, 556
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	359, 707, 854
BshFI	GGCC	2 cut(s)	352, 428
BshNI	GGYRCC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	810, 882
BslI	CCNNNNNNNGG	2 cut(s)	112, 424
BsmAI	GTCTC	2 cut(s)	393, 450
BsnI	GGCC	2 cut(s)	352, 428
Bsp1286I	GDGCHC	1 cut(s)	962
Bsp143I	GATC	4 cut(s)	340, 735, 775, 964
BspACI	CCGC	1 cut(s)	934
BspANI	GGCC	2 cut(s)	352, 428
BspCNI	CTCAG	2 cut(s)	167, 289
BspLI	GGNNCC	2 cut(s)	336, 824
BspPI	GGATC	3 cut(s)	335, 730, 972
BspQI	GCTCTTC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	334
BsrDI	GCAATG	3 cut(s)	167, 560, 931
BsrI	ACTGG	2 cut(s)	328, 556
BssECI	CCNNGG	2 cut(s)	579, 880
BssMI	GATC	4 cut(s)	340, 735, 775, 964
BssNAI	GTATAC	1 cut(s)	604
BssNI	GRCGYC	1 cut(s)	998
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	3 cut(s)	581, 800, 938
Bst4CI	ACNGT	3 cut(s)	461, 859, 1054
Bst6I	CTCTTC	1 cut(s)	644
BstACI	GRCGYC	1 cut(s)	998
BstDEI	CTNAG	4 cut(s)	109, 154, 297, 627
BstKTI	GATC	4 cut(s)	343, 738, 778, 967
BstMAI	GTCTC	2 cut(s)	393, 450
BstMBI	GATC	4 cut(s)	340, 735, 775, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	876
BstNI	CCWGG	3 cut(s)	581, 800, 938
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	4 cut(s)	579, 798, 880, 936
BstSFI	CTRYAG	2 cut(s)	161, 261
BstV1I	GCAGC	3 cut(s)	359, 707, 854
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	2 cut(s)	340, 735
BstYI	RGATCY	2 cut(s)	340, 735
BstZ17I	GTATAC	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	352, 428
BtsIMutI	CAGTG	3 cut(s)	321, 868, 1059
CaiI	CAGNNNCTG	1 cut(s)	867
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	1006
CsiI	ACCWGGT	1 cut(s)	798
Csp6I	GTAC	3 cut(s)	158, 335, 619
CviAII	CATG	8 cut(s)	13, 77, 516, 551, 608, 712, 768, 914
CviQI	GTAC	3 cut(s)	158, 335, 619
DdeI	CTNAG	4 cut(s)	109, 154, 297, 627
DpnI	GATC	4 cut(s)	342, 737, 777, 966
DpnII	GATC	4 cut(s)	340, 735, 775, 964
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
EciI	GGCGGA	1 cut(s)	923
Eco24I	GRGCYC	1 cut(s)	962
Eco57I	CTGAAG	2 cut(s)	107, 714
EcoRII	CCWGG	3 cut(s)	579, 798, 936
EcoT38I	GRGCYC	1 cut(s)	962
FaeI	CATG	8 cut(s)	16, 80, 519, 554, 611, 715, 771, 917
FatI	CATG	8 cut(s)	12, 76, 515, 550, 607, 711, 767, 913
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	3 cut(s)	373, 696, 868
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	3 cut(s)	373, 696, 868
FspBI	CTAG	1 cut(s)	902
GluI	GCNGC	3 cut(s)	373, 696, 868
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	352, 428
HapII	CCGG	2 cut(s)	810, 882
HgaI	GACGC	1 cut(s)	1006
Hin1I	GRCGYC	1 cut(s)	998
Hin1II	CATG	8 cut(s)	16, 80, 519, 554, 611, 715, 771, 917
HpaII	CCGG	2 cut(s)	810, 882
HphI	GGTGA	3 cut(s)	16, 42, 261
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	7 cut(s)	87, 136, 298, 396, 733, 964, 989
Hpy188III	TCNNGA	2 cut(s)	673, 749
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	1 cut(s)	1000
HpyAV	CCTTC	4 cut(s)	186, 581, 654, 1061
HpyCH4III	ACNGT	3 cut(s)	461, 859, 1054
HpyCH4V	TGCA	3 cut(s)	95, 482, 1044
HpyF10VI	GCNNNNNNNGC	1 cut(s)	876
HpyF3I	CTNAG	4 cut(s)	109, 154, 297, 627
Hsp92I	GRCGYC	1 cut(s)	998
Hsp92II	CATG	8 cut(s)	16, 80, 519, 554, 611, 715, 771, 917
KpnI	GGTACC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	4 cut(s)	340, 735, 775, 964
LguI	GCTCTTC	1 cut(s)	644
Lsp1109I	GCAGC	3 cut(s)	359, 707, 854
LweI	GCATC	1 cut(s)	983
MabI	ACCWGGT	1 cut(s)	798
MaeI	CTAG	1 cut(s)	902
MaeIII	GTNAC	2 cut(s)	311, 545
MalI	GATC	4 cut(s)	342, 737, 777, 966
MboI	GATC	4 cut(s)	340, 735, 775, 964
MboII	GAAGA	4 cut(s)	216, 418, 631, 719
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	340, 735
MhlI	GDGCHC	1 cut(s)	962
MluCI	AATT	5 cut(s)	180, 397, 473, 537, 720
MlyI	GAGTC	4 cut(s)	32, 221, 395, 670
MmeI	TCCRAC	2 cut(s)	281, 299
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	3 cut(s)	149, 828, 893
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	2 cut(s)	810, 882
MspR9I	CCNGG	4 cut(s)	581, 800, 882, 938
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	3 cut(s)	581, 800, 938
MwoI	GCNNNNNNNGC	1 cut(s)	876
NciI	CCSGG	1 cut(s)	882
NdeII	GATC	4 cut(s)	340, 735, 775, 964
NlaIII	CATG	8 cut(s)	16, 80, 519, 554, 611, 715, 771, 917
NlaIV	GGNNCC	2 cut(s)	336, 824
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	917
PciSI	GCTCTTC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	6 cut(s)	137, 142, 266, 422, 448, 533
PflFI	GACNNNGTC	1 cut(s)	857
PkrI	GCNGC	3 cut(s)	374, 697, 869
PleI	GAGTC	4 cut(s)	31, 220, 394, 670
PpsI	GAGTC	4 cut(s)	31, 220, 394, 670
PshBI	ATTAAT	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	579, 798, 936
PspGI	CCWGG	3 cut(s)	579, 798, 936
PspN4I	GGNNCC	2 cut(s)	336, 824
PspPI	GGNCC	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	867
PsuI	RGATCY	2 cut(s)	340, 735
PsyI	GACNNNGTC	1 cut(s)	857
RsaI	GTAC	3 cut(s)	159, 336, 620
RsaNI	GTAC	3 cut(s)	158, 335, 619
RseI	CAYNNNNRTG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	149, 828, 893
SatI	GCNGC	3 cut(s)	373, 696, 868
Sau3AI	GATC	4 cut(s)	340, 735, 775, 964
Sau96I	GGNCC	1 cut(s)	350
ScaI	AGTACT	1 cut(s)	159
SchI	GAGTC	4 cut(s)	32, 221, 395, 670
ScrFI	CCNGG	4 cut(s)	581, 800, 882, 938
SduI	GDGCHC	1 cut(s)	962
SexAI	ACCWGGT	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	983
SfcI	CTRYAG	2 cut(s)	161, 261
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	5 cut(s)	180, 397, 473, 537, 720
SsiI	CCGC	1 cut(s)	934
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	902
StyD4I	CCNGG	4 cut(s)	579, 798, 880, 936
TaaI	ACNGT	3 cut(s)	461, 859, 1054
TaqI	TCGA	3 cut(s)	140, 145, 759
TasI	AATT	5 cut(s)	180, 397, 473, 537, 720
TatI	WGTACW	2 cut(s)	157, 618
TfiI	GAWTC	6 cut(s)	137, 142, 266, 422, 448, 533
Tru1I	TTAA	3 cut(s)	149, 828, 893
Tru9I	TTAA	3 cut(s)	149, 828, 893
TscAI	CASTG	3 cut(s)	328, 868, 1059
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	372, 695, 867
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	6 cut(s)	29, 36, 419, 728, 861, 940
TspRI	CASTG	3 cut(s)	328, 868, 1059
Tth111I	GACNNNGTC	1 cut(s)	857
VspI	ATTAAT	1 cut(s)	149
XapI	RAATTY	2 cut(s)	473, 720
XceI	RCATGY	1 cut(s)	917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	1 cut(s)	902
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.