AT4G01080

trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012827
Physical Location & Seq
Reverse (-)
466298 .. 468294
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01080.1

Sequence Viewer

Length: 1329 bp
ATGGAACAACAATTAACCTTAGTATTGCTTGATAGCCCAAAAGGCGCCAAATATGTAGAAACCTTTGAAGAAGCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTCCCTCCTGCACTGATCACCGCCATCGAACCTTCGTCAAATTCTTCCTTTACTTCTCTCTCGTCGCTCTTGCTTACTATTTCATCATCTCCAGTCTCGCCGTCTCTCCAATTCCCCCAACATTGCCGCAATCTTCTCCCGGAAACGTTTCATCAGCAAAGTGTGATCTTTTCACCGGAGATTGGATACCAGATCCAACAGGTCCTCTGTACACAAATGTCACTTGTCGTCACATTCAAGATTTTCAGAACTGCCTATTGAATGGACGACCAGATGTGAATTATCTCTTCTGGAGATGGAAGCCTCGTGATTGTGATCTTCCTAGGTTTAGTCCATCGCAGTTTCTTGCTTCAGTGAAGAACAAATGGTGGGCTTTTATCGGTGATTCCATTGCTCGTAATCATGTCCAGTCTCTCATCTGCATTCTCTCTCAGGTGGAAGAAGTGGAGGAAATCTATCACGATAAGGAGTTCAGATCCAAGATATGGAGATTCCCTTCTCACAACTTCACACTATCAGTCATTTGGTCTCCTTTCCTTCTCAAATCCGAAACATCTAGCAACTCGGATATTCAGCTTTACCTCGACCAGCTTGACCACAAATGGACTGTCCAATACCCGAAATTCGACTACGTTGTTATCTCTGGAGGCAAATGGTTTCTTAAAACAACAATTTTCCATGAAAACAACGTAGTCACGGGCTGTCATTACTGCCAAGGAAGAAACAACCTAACTGATCTCGGCTATGATTACTCCTACCGCAAAACCCTAAACCTTCTCCGTGACTTCGTCCTAAACTCAACCCACAAACCGCTGGTTCTGTTTCGAACAACAACGCCTGACCATTTCGAAAACGGAGAGTGGAACACTGGTGGGTATTGCAACAGAACGATGCCGTTTAAAGAAGGCCAAGCAAATATGAAAACTGTAGATGATGTGATGCGTGATGTTGAGCTTGAGGTGTTTCAGAAATTTGGGAAAGGTTTTGGCTTAGGTTCCAACATCAGGCTATTAGACACGACTGGAATGTCTCTTCTCCGTCCAGACGGGCATCCGGGACCATACCGGCATCCAAATCCTTTTGCTGGAGTTAAGAATAAGAGCAATGTTCAGAATGATTGTCTGCATTGGTGCTTACCTGGTCCAATTGATTCATGGAATGATGTGATGGTGGAAACCACGCTTAACCGGGAACGGGAACTATACGATTTAACCGGTTAA

Protein Analysis

442

Amino Acids

50.69

Weight (kDa)

6.39

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 90 - 142 6.5e-21 PMR5 N terminal Domain
PC-Esterase PF13839 143 - 428 4.1e-88 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01430 AT4G01080
fragaria_vesca FvH4_7g16070
malus_domestica MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica Prupe.2G184500_v2.0.a1
pyrus_communis pycom01g10610 pycom07g14580
rosa_chinensis RchiOBHm_Chr1g0359011
rosa_laevigata RLG00000027909
rosa_multiflora Rmu_sc0004044.1_g000006
rosa_roxburghii Rroxscaffold_4G00297460
rosa_rugosa Rorug01G0267100
rosa_samantha Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana Rw1G024930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1135
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 594
AciI CCGC 5 cut(s) 75, 130, 236, 868, 920
AclI AACGTT 1 cut(s) 255
AclWI GGATC 2 cut(s) 296, 579
AcsI RAATTY 3 cut(s) 149, 731, 1079
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 5 cut(s) 291, 594, 1113, 1193, 1303
AgeI ACCGGT 1 cut(s) 1322
AgsI TTSAA 3 cut(s) 68, 347, 370
AjnI CCWGG 1 cut(s) 1246
AluBI AGCT 3 cut(s) 685, 700, 1063
AluI AGCT 3 cut(s) 685, 700, 1063
Alw26I GTCTC 5 cut(s) 209, 217, 525, 642, 1143
AlwI GGATC 2 cut(s) 296, 579
AoxI GGCC 1 cut(s) 1015
ApoI RAATTY 3 cut(s) 149, 731, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
AsiGI ACCGGT 1 cut(s) 1322
Asp700I GAANNNNTTC 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 431
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 3 cut(s) 311, 1166, 1250
AsuC2I CCSGG 3 cut(s) 249, 1164, 1298
AsuHPI GGTGA 3 cut(s) 119, 274, 503
AsuII TTCGAA 2 cut(s) 934, 957
AvaII GGWCC 3 cut(s) 311, 1166, 1250
AvrII CCTAGG 1 cut(s) 431
BanI GGYRCC 1 cut(s) 44
BauI CACGAG 1 cut(s) 414
BccI CCATC 4 cut(s) 141, 399, 451, 1270
BceAI ACGGC 2 cut(s) 194, 988
BciT130I CCWGG 1 cut(s) 1248
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 3 cut(s) 249, 1164, 1298
BcoDI GTCTC 5 cut(s) 209, 217, 525, 642, 1143
BfaI CTAG 2 cut(s) 432, 666
BfmI CTRYAG 1 cut(s) 1035
BfoI RGCGCY 1 cut(s) 48
BfuI GTATCC 1 cut(s) 288
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 2 cut(s) 75, 236
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 2 cut(s) 76, 237
Bme1390I CCNGG 4 cut(s) 249, 1164, 1248, 1298
Bme18I GGWCC 3 cut(s) 311, 1166, 1250
BmgT120I GGNCC 3 cut(s) 311, 1166, 1250
BmiI GGNNCC 3 cut(s) 46, 1105, 1167
BmrFI CCNGG 4 cut(s) 249, 1164, 1248, 1298
BmsI GCATC 4 cut(s) 990, 1038, 1168, 1186
BpmI CTGGAG 4 cut(s) 184, 421, 774, 1215
Bpu10I CCTNAGC 1 cut(s) 1099
Bpu14I TTCGAA 2 cut(s) 934, 957
BpuEI CTTGAG 1 cut(s) 1085
BpuMI CCSGG 3 cut(s) 249, 1164, 1298
BsaBI GATNNNNATC 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 431, 823
BsaWI WCCGGW 2 cut(s) 284, 1322
Bsc4I CCNNNNNNNGG 5 cut(s) 291, 594, 1113, 1193, 1303
Bse118I RCCGGY 2 cut(s) 1173, 1322
Bse1I ACTGG 4 cut(s) 201, 517, 982, 1135
Bse3DI GCAATG 3 cut(s) 230, 498, 1219
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 1 cut(s) 1248
BseDI CCNNGG 2 cut(s) 431, 823
BseGI GGATG 2 cut(s) 1159, 1177
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 5 cut(s) 291, 594, 1113, 1193, 1303
BseMI GCAATG 3 cut(s) 230, 498, 1219
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 4 cut(s) 201, 517, 982, 1135
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 1 cut(s) 1017
BshNI GGYRCC 1 cut(s) 44
BshTI ACCGGT 1 cut(s) 1322
BsiSI CCGG 6 cut(s) 249, 285, 1163, 1174, 1297, 1323
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 5 cut(s) 291, 594, 1113, 1193, 1303
BsmAI GTCTC 5 cut(s) 209, 217, 525, 642, 1143
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 1179
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 1 cut(s) 1017
Bso31I GGTCTC 1 cut(s) 642
Bsp119I TTCGAA 2 cut(s) 934, 957
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 6 cut(s) 124, 274, 301, 424, 584, 844
BspACI CCGC 5 cut(s) 75, 130, 236, 868, 920
BspANI GGCC 1 cut(s) 1017
BspCNI CTCAG 1 cut(s) 553
BspLI GGNNCC 3 cut(s) 46, 1105, 1167
BspPI GGATC 2 cut(s) 296, 579
BspT104I TTCGAA 2 cut(s) 934, 957
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 642
BsrDI GCAATG 3 cut(s) 230, 498, 1219
BsrFI RCCGGY 2 cut(s) 1173, 1322
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 4 cut(s) 201, 517, 982, 1135
BssAI RCCGGY 2 cut(s) 1173, 1322
BssECI CCNNGG 2 cut(s) 431, 823
BssMI GATC 6 cut(s) 124, 274, 301, 424, 584, 844
BssNI GRCGYC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 431, 823
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 1248
Bst4CI ACNGT 2 cut(s) 718, 1036
Bst6I CTCTTC 2 cut(s) 401, 1146
BstACI GRCGYC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 318
BstBI TTCGAA 2 cut(s) 934, 957
BstDEI CTNAG 3 cut(s) 19, 540, 1099
BstF5I GGATG 2 cut(s) 1159, 1177
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 6 cut(s) 127, 277, 304, 427, 587, 847
BstMAI GTCTC 5 cut(s) 209, 217, 525, 642, 1143
BstMBI GATC 6 cut(s) 124, 274, 301, 424, 584, 844
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 1248
BstSCI CCNGG 4 cut(s) 247, 1162, 1246, 1296
BstSFI CTRYAG 1 cut(s) 1035
BstX2I RGATCY 2 cut(s) 301, 584
BstYI RGATCY 2 cut(s) 301, 584
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 1017
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 2 cut(s) 1159, 1177
BtsIMutI CAGTG 3 cut(s) 120, 468, 975
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 2 cut(s) 1173, 1322
Cfr13I GGNCC 3 cut(s) 311, 1166, 1250
CsiI ACCWGGT 1 cut(s) 1246
Csp6I GTAC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 1322
CviAII CATG 3 cut(s) 512, 788, 1263
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 3 cut(s) 19, 540, 1099
DinI GGCGCC 1 cut(s) 46
DpnI GATC 6 cut(s) 126, 276, 303, 426, 586, 846
DpnII GATC 6 cut(s) 124, 274, 301, 424, 584, 844
DraI TTTAAA 1 cut(s) 1009
DrdI GACNNNNNNGTC 1 cut(s) 1135
DseDI GACNNNNNNGTC 1 cut(s) 1135
Eam1104I CTCTTC 2 cut(s) 401, 1146
EarI CTCTTC 2 cut(s) 401, 1146
Eco130I CCWWGG 2 cut(s) 431, 823
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 3 cut(s) 311, 1166, 1250
Eco57I CTGAAG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 1246
EcoT14I CCWWGG 2 cut(s) 431, 823
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 431, 823
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 3 cut(s) 515, 791, 1266
FaiI YATR 9 cut(s) 54, 513, 595, 789, 855, 1028, 1171, 1264, 1312
FaqI GGGAC 1 cut(s) 1179
FatI CATG 3 cut(s) 511, 787, 1262
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 75, 236
FokI GGATG 2 cut(s) 1146, 1164
Fsp4HI GCNGC 2 cut(s) 75, 236
FspBI CTAG 2 cut(s) 432, 666
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 75, 236
GsuI CTGGAG 4 cut(s) 184, 421, 774, 1215
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 1 cut(s) 1017
HapII CCGG 6 cut(s) 249, 285, 1163, 1174, 1297, 1323
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 3 cut(s) 515, 791, 1266
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 3 cut(s) 494, 600, 1259
HpaII CCGG 6 cut(s) 249, 285, 1163, 1174, 1297, 1323
HphI GGTGA 3 cut(s) 119, 274, 503
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 6 cut(s) 357, 584, 658, 676, 1077, 1221
Hpy188III TCNNGA 6 cut(s) 347, 400, 416, 569, 753, 1151
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 5 cut(s) 151, 615, 656, 893, 1007
HpyCH4III ACNGT 2 cut(s) 718, 1036
HpyCH4IV ACGT 3 cut(s) 255, 741, 798
HpyCH4V TGCA 4 cut(s) 120, 531, 990, 1234
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 19, 540, 1099
HpySE526I ACGT 3 cut(s) 255, 741, 798
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 3 cut(s) 515, 791, 1266
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 6 cut(s) 124, 274, 301, 424, 584, 844
LweI GCATC 4 cut(s) 990, 1038, 1168, 1186
MabI ACCWGGT 1 cut(s) 1246
MaeI CTAG 2 cut(s) 432, 666
MaeII ACGT 3 cut(s) 255, 741, 798
MaeIII GTNAC 4 cut(s) 328, 338, 802, 890
MalI GATC 6 cut(s) 126, 276, 303, 426, 586, 846
MboI GATC 6 cut(s) 124, 274, 301, 424, 584, 844
MfeI CAATTG 1 cut(s) 1254
MflI RGATCY 2 cut(s) 301, 584
MluCI AATT 8 cut(s) 11, 149, 219, 388, 731, 780, 1079, 1254
Mly113I GGCGCC 1 cut(s) 45
MmeI TCCRAC 2 cut(s) 329, 1131
MnlI CCTC 7 cut(s) 124, 324, 423, 550, 701, 749, 1060
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 7 cut(s) 14, 771, 1008, 1200, 1293, 1319, 1327
MspA1I CMGCKG 1 cut(s) 922
MspI CCGG 6 cut(s) 249, 285, 1163, 1174, 1297, 1323
MspR9I CCNGG 4 cut(s) 249, 1164, 1248, 1298
MunI CAATTG 1 cut(s) 1254
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 1248
MwoI GCNNNNNNNGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 3 cut(s) 249, 1164, 1298
NdeII GATC 6 cut(s) 124, 274, 301, 424, 584, 844
NlaIII CATG 3 cut(s) 515, 791, 1266
NlaIV GGNNCC 3 cut(s) 46, 1105, 1167
NmeAIII GCCGAG 1 cut(s) 828
NmuCI GTSAC 4 cut(s) 328, 338, 802, 890
NspV TTCGAA 2 cut(s) 934, 957
PctI GAATGC 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 494, 600, 1259
PflFI GACNNNGTC 1 cut(s) 896
PflMI CCANNNNNTGG 1 cut(s) 594
PfoI TCCNGGA 2 cut(s) 247, 1162
PinAI ACCGGT 1 cut(s) 1322
PkrI GCNGC 2 cut(s) 76, 237
PluTI GGCGCC 1 cut(s) 48
PpuMI RGGWCCY 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 1246
PspGI CCWGG 1 cut(s) 1246
PspN4I GGNNCC 3 cut(s) 46, 1105, 1167
PspPI GGNCC 3 cut(s) 311, 1166, 1250
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 2 cut(s) 301, 584
PsyI GACNNNGTC 1 cut(s) 896
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 7 cut(s) 14, 771, 1008, 1200, 1293, 1319, 1327
SatI GCNGC 2 cut(s) 75, 236
Sau3AI GATC 6 cut(s) 124, 274, 301, 424, 584, 844
Sau96I GGNCC 3 cut(s) 311, 1166, 1250
ScrFI CCNGG 4 cut(s) 249, 1164, 1248, 1298
SexAI ACCWGGT 1 cut(s) 1246
SfaNI GCATC 4 cut(s) 990, 1038, 1168, 1186
SfcI CTRYAG 1 cut(s) 1035
SfoI GGCGCC 1 cut(s) 46
SfuI TTCGAA 2 cut(s) 934, 957
SinI GGWCC 3 cut(s) 311, 1166, 1250
SmlI CTYRAG 1 cut(s) 1064
SmoI CTYRAG 1 cut(s) 1064
Sse9I AATT 8 cut(s) 11, 149, 219, 388, 731, 780, 1079, 1254
SsiI CCGC 5 cut(s) 75, 130, 236, 868, 920
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 2 cut(s) 432, 666
StyD4I CCNGG 4 cut(s) 247, 1162, 1246, 1296
StyI CCWWGG 2 cut(s) 431, 823
TaaI ACNGT 2 cut(s) 718, 1036
TaiI ACGT 3 cut(s) 258, 744, 801
TaqI TCGA 5 cut(s) 136, 693, 735, 934, 957
TasI AATT 8 cut(s) 11, 149, 219, 388, 731, 780, 1079, 1254
TatI WGTACW 1 cut(s) 318
TauI GCSGC 2 cut(s) 77, 238
TfiI GAWTC 3 cut(s) 494, 600, 1259
Tru1I TTAA 7 cut(s) 14, 771, 1008, 1200, 1293, 1319, 1327
Tru9I TTAA 7 cut(s) 14, 771, 1008, 1200, 1293, 1319, 1327
TscAI CASTG 3 cut(s) 127, 468, 982
TseFI GTSAC 4 cut(s) 328, 338, 802, 890
Tsp45I GTSAC 4 cut(s) 328, 338, 802, 890
TspDTI ATGAA 5 cut(s) 181, 249, 804, 1043, 1251
TspGWI ACGGA 3 cut(s) 878, 978, 1136
TspRI CASTG 3 cut(s) 127, 468, 982
Tth111I GACNNNGTC 1 cut(s) 896
Van91I CCANNNNNTGG 1 cut(s) 594
VpaK11BI GGWCC 3 cut(s) 311, 1166, 1250
XapI RAATTY 3 cut(s) 149, 731, 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 1260
XmaJI CCTAGG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 2 cut(s) 432, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.