pycom07g14580

Protein trichome birefringence-like 25

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012827
Physical Location & Seq
Forward (+)
16529425 .. 16532581
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g14580.4

Sequence Viewer

Length: 1008 bp
ATGGGACGAGACAGGACAGAACAGAACGGAGCGGGAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAAGAGACGGAGAGGTTATAATTTTATGTTCCACGGATGTGGAACAAGTCGTTCCAGGGGTCTCTTTTCTCTTAGTTGGTCTCGCTTTTCGACTCTTGTTTTCCGATTCTGTGCTTCCTATCGGATTAAATATACCAGTAGAGCCACCTCCTCTTGCATTTGCAGACCAACAACAAACAGACTCCTCCTCCTCCTCCTCCGCTGTTTCCGATTCTTCTCTATTTCCTGGTCAAATTCAAAACTCTGCAATTGTTGATTTTCCTGGAAACACCTCCCAAACACATGACAATGTAAAGTGTGACCTTTTTACTGGAGATTGGGTACCAGATCCGTCAGGTCCAAGATACACTAGTGAAAGCTGCCATGTGGTGGAACCTCATCAGAATTGTATGAAGAACGGTCGCCCCGATTCCGACTACTTTTACTGGAGGTGGAACCCAAGAGACTGTGAGCTACCCAAGTTCAATCCGCCGAGTTTTCTTGGTATAATGAGGAACAAATCATGGGCCTTCATTGGTGATTCGATTTCGCGTAACCATGTGCAGTCATTGCTTTGCATTCTCTCTCAGGTGGAGCAAGCTGTTGAGGTATACCATGACAAAGAATACAGCTCTAAAAGATGGCTTTTCCCTTCTTACAATTTCACTGTTTCCGTAATTTGGACTCCGTTTCTCGTCAAAGCGGCCATTTTTGAAGACATGAACGGAGTTTCTACTTCCGAAATTCAGCTTTATCTTGACGAACTCGACAAGACATGGACCGATCAGTATAACAGCTTGGATTACGTGGTGATTGCCGGAGGAAAATGGTTCCTGAAAACCGCAATTTACCATGAGAACAACACGGTCAGAGGCTGCCATTACTGCCCTGGAAGACTACGCCTATCGCAGTGCCCTCCGTCTGGTTTTCAATTTCATCACTCGTTCGGATCATAA

Protein Analysis

336

Amino Acids

37.66

Weight (kDa)

4.96

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01430 AT4G01080
fragaria_vesca FvH4_7g16070
malus_domestica MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica Prupe.2G184500_v2.0.a1
pyrus_communis pycom01g10610 pycom07g14580
rosa_chinensis RchiOBHm_Chr1g0359011
rosa_laevigata RLG00000027909
rosa_multiflora Rmu_sc0004044.1_g000006
rosa_roxburghii Rroxscaffold_4G00297460
rosa_rugosa Rorug01G0267100
rosa_samantha Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana Rw1G024930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 604
AciI CCGC 5 cut(s) 32, 273, 542, 755, 894
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 756
AcsI RAATTY 2 cut(s) 306, 795
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 4 cut(s) 53, 442, 732, 974
AgsI TTSAA 4 cut(s) 311, 538, 767, 983
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 4 cut(s) 127, 298, 334, 940
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 6 cut(s) 432, 526, 653, 684, 802, 849
AluI AGCT 6 cut(s) 432, 526, 653, 684, 802, 849
Alw26I GTCTC 5 cut(s) 3, 72, 139, 158, 510
AlwI GGATC 1 cut(s) 395
AlwNI CAGNNNCTG 1 cut(s) 927
AoxI GGCC 2 cut(s) 579, 756
ApeKI GCWGC 2 cut(s) 432, 927
ApoI RAATTY 2 cut(s) 306, 795
Asp718I GGTACC 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 410, 579, 831
AsuHPI GGTGA 2 cut(s) 602, 874
AvaII GGWCC 2 cut(s) 410, 831
BaeGI GKGCMC 1 cut(s) 968
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BanI GGYRCC 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 774, 952
BbvI GCAGC 2 cut(s) 419, 914
BccI CCATC 2 cut(s) 47, 687
BciT130I CCWGG 4 cut(s) 129, 300, 336, 942
BcoDI GTCTC 5 cut(s) 3, 72, 139, 158, 510
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 1 cut(s) 423
BisI GCNGC 3 cut(s) 433, 756, 928
BlsI GCNGC 3 cut(s) 434, 757, 929
Bme1390I CCNGG 4 cut(s) 129, 300, 336, 942
Bme18I GGWCC 2 cut(s) 410, 831
BmgT120I GGNCC 3 cut(s) 410, 579, 831
BmiI GGNNCC 4 cut(s) 396, 447, 509, 884
BmrFI CCNGG 4 cut(s) 129, 300, 336, 942
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 2 cut(s) 774, 952
BpmI CTGGAG 2 cut(s) 405, 520
BsaAI YACGTR 1 cut(s) 859
BsaI GGTCTC 2 cut(s) 139, 158
BsaJI CCNNGG 4 cut(s) 48, 105, 128, 940
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 378, 408
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 442, 732, 974
Bse1I ACTGG 3 cut(s) 209, 388, 503
Bse3DI GCAATG 1 cut(s) 620
BseBI CCWGG 4 cut(s) 129, 300, 336, 942
BseDI CCNNGG 4 cut(s) 48, 105, 128, 940
BseGI GGATG 2 cut(s) 58, 115
BseLI CCNNNNNNNGG 4 cut(s) 53, 442, 732, 974
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 3 cut(s) 209, 388, 503
BseRI GAGGAG 6 cut(s) 213, 247, 250, 253, 256, 259
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 2 cut(s) 419, 914
BsgI GTGCAG 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 604
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 2 cut(s) 581, 758
BshNI GGYRCC 1 cut(s) 394
BsiEI CGRYCG 1 cut(s) 475
BsiSI CCGG 1 cut(s) 870
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 53, 442, 732, 974
BsmAI GTCTC 5 cut(s) 3, 72, 139, 158, 510
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 2 cut(s) 581, 758
Bso31I GGTCTC 2 cut(s) 139, 158
Bsp1286I GDGCHC 1 cut(s) 968
Bsp143I GATC 3 cut(s) 400, 835, 1001
BspACI CCGC 5 cut(s) 32, 273, 542, 755, 894
BspANI GGCC 2 cut(s) 581, 758
BspCNI CTCAG 1 cut(s) 652
BspFNI CGCG 1 cut(s) 604
BspLI GGNNCC 4 cut(s) 396, 447, 509, 884
BspPI GGATC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 394
BspTNI GGTCTC 2 cut(s) 139, 158
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 620
BsrI ACTGG 3 cut(s) 209, 388, 503
BssECI CCNNGG 4 cut(s) 48, 105, 128, 940
BssMI GATC 3 cut(s) 400, 835, 1001
BssNAI GTATAC 1 cut(s) 664
Bst1107I GTATAC 1 cut(s) 664
Bst2UI CCWGG 4 cut(s) 129, 300, 336, 942
Bst4CI ACNGT 4 cut(s) 473, 521, 721, 919
BstAPI GCANNNNNTGC 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 145, 639
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 58, 115
BstFNI CGCG 1 cut(s) 604
BstKTI GATC 3 cut(s) 403, 838, 1004
BstMAI GTCTC 5 cut(s) 3, 72, 139, 158, 510
BstMBI GATC 3 cut(s) 400, 835, 1001
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 2 cut(s) 622, 936
BstNI CCWGG 4 cut(s) 129, 300, 336, 942
BstSCI CCNGG 4 cut(s) 127, 298, 334, 940
BstSLI GKGCMC 1 cut(s) 968
BstUI CGCG 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 419, 914
BstV2I GAAGAC 2 cut(s) 774, 952
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 400
BstZ17I GTATAC 1 cut(s) 664
BsuRI GGCC 2 cut(s) 581, 758
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 58, 115
BtsI GCAGTG 1 cut(s) 968
BtsIMutI CAGTG 2 cut(s) 717, 968
Cac8I GCNNGC 1 cut(s) 651
CaiI CAGNNNCTG 1 cut(s) 927
Cfr13I GGNCC 3 cut(s) 410, 579, 831
Csp6I GTAC 1 cut(s) 395
CviAII CATG 8 cut(s) 356, 437, 576, 611, 668, 772, 828, 905
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 2 cut(s) 145, 639
DpnI GATC 3 cut(s) 402, 837, 1003
DpnII GATC 3 cut(s) 400, 835, 1001
EaeI YGGCCR 1 cut(s) 756
EciI GGCGGA 1 cut(s) 531
Eco31I GGTCTC 2 cut(s) 139, 158
Eco47I GGWCC 2 cut(s) 410, 831
EcoRII CCWGG 4 cut(s) 127, 298, 334, 940
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 8 cut(s) 359, 440, 579, 614, 671, 775, 831, 908
FaqI GGGAC 1 cut(s) 18
FatI CATG 8 cut(s) 355, 436, 575, 610, 667, 771, 827, 904
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 3 cut(s) 433, 756, 928
FokI GGATG 2 cut(s) 65, 122
Fsp4HI GCNGC 3 cut(s) 433, 756, 928
FspBI CTAG 1 cut(s) 423
GluI GCNGC 3 cut(s) 433, 756, 928
GsuI CTGGAG 2 cut(s) 405, 520
HaeIII GGCC 2 cut(s) 581, 758
HapII CCGG 1 cut(s) 870
Hin1II CATG 8 cut(s) 359, 440, 579, 614, 671, 775, 831, 908
HinfI GANTC 7 cut(s) 165, 179, 254, 284, 482, 593, 736
HpaII CCGG 1 cut(s) 870
HphI GGTGA 2 cut(s) 602, 874
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 9 cut(s) 52, 178, 197, 283, 456, 487, 793, 923, 1001
Hpy188III TCNNGA 2 cut(s) 809, 886
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 592, 714
HpyCH4III ACNGT 4 cut(s) 473, 521, 721, 919
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 5 cut(s) 230, 236, 320, 616, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 622, 936
HpyF3I CTNAG 2 cut(s) 145, 639
HpySE526I ACGT 1 cut(s) 858
Hsp92II CATG 8 cut(s) 359, 440, 579, 614, 671, 775, 831, 908
KpnI GGTACC 1 cut(s) 398
Kzo9I GATC 3 cut(s) 400, 835, 1001
LmnI GCTCC 3 cut(s) 29, 35, 646
Lsp1109I GCAGC 2 cut(s) 419, 914
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 2 cut(s) 371, 605
MalI GATC 3 cut(s) 402, 837, 1003
MbiI CCGCTC 1 cut(s) 32
MboI GATC 3 cut(s) 400, 835, 1001
MboII GAAGA 6 cut(s) 80, 83, 279, 478, 779, 957
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 968
MluCI AATT 9 cut(s) 93, 306, 321, 457, 712, 729, 795, 897, 983
MlyI GAGTC 3 cut(s) 159, 248, 730
MmeI TCCRAC 1 cut(s) 510
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 110, 360
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 870
MspR9I CCNGG 4 cut(s) 129, 300, 336, 942
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 630
MvaI CCWGG 4 cut(s) 129, 300, 336, 942
MvnI CGCG 1 cut(s) 604
MwoI GCNNNNNNNGC 2 cut(s) 622, 936
NdeII GATC 3 cut(s) 400, 835, 1001
NlaIII CATG 8 cut(s) 359, 440, 579, 614, 671, 775, 831, 908
NlaIV GGNNCC 4 cut(s) 396, 447, 509, 884
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PctI GAATGC 1 cut(s) 630
PfeI GAWTC 4 cut(s) 179, 284, 482, 593
PflMI CCANNNNNTGG 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 3 cut(s) 434, 757, 929
PleI GAGTC 3 cut(s) 159, 248, 730
PpsI GAGTC 3 cut(s) 159, 248, 730
Ppu21I YACGTR 1 cut(s) 859
PsiI TTATAA 1 cut(s) 92
Psp6I CCWGG 4 cut(s) 127, 298, 334, 940
PspGI CCWGG 4 cut(s) 127, 298, 334, 940
PspN4I GGNNCC 4 cut(s) 396, 447, 509, 884
PspPI GGNCC 3 cut(s) 410, 579, 831
PstNI CAGNNNCTG 1 cut(s) 927
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
RseI CAYNNNNRTG 2 cut(s) 110, 360
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 433, 756, 928
Sau3AI GATC 3 cut(s) 400, 835, 1001
Sau96I GGNCC 3 cut(s) 410, 579, 831
SchI GAGTC 3 cut(s) 159, 248, 730
ScrFI CCNGG 4 cut(s) 129, 300, 336, 942
SduI GDGCHC 1 cut(s) 968
SfaNI GCATC 1 cut(s) 33
SinI GGWCC 2 cut(s) 410, 831
SmiMI CAYNNNNRTG 2 cut(s) 110, 360
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 9 cut(s) 93, 306, 321, 457, 712, 729, 795, 897, 983
SsiI CCGC 5 cut(s) 32, 273, 542, 755, 894
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 4 cut(s) 127, 298, 334, 940
TaaI ACNGT 4 cut(s) 473, 521, 721, 919
TaiI ACGT 1 cut(s) 861
TaqI TCGA 3 cut(s) 163, 596, 819
TaqII GACCGA 1 cut(s) 848
TasI AATT 9 cut(s) 93, 306, 321, 457, 712, 729, 795, 897, 983
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 4 cut(s) 179, 284, 482, 593
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 2 cut(s) 724, 968
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 2 cut(s) 432, 927
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 4 cut(s) 479, 574, 788, 977
TspGWI ACGGA 8 cut(s) 42, 96, 122, 393, 715, 729, 792, 960
TspRI CASTG 2 cut(s) 724, 968
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 410, 831
XapI RAATTY 2 cut(s) 306, 795
XcmI CCANNNNNNNNNTGG 1 cut(s) 938
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.