Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0012827

Physical Location & Seq

Genomic Coordinates Forward (+)

51349810 .. 51352898

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGTGAAGGACATGAAGTTTGAGTCCTCATCATCAAACCCATTTTCATCACCATCATCGTTCCTCAAACATAATCATGTATTTCTGAAGTTTGCAGTTTGTTTCCTCTTAGTGGGTTTGGCTTTTCGCTTCTCCGATTCGATTCGATTAGTCTCAGTACTACAGCCACTGCCACCTTCAATTGAAACAGAGCAAGAAACAGAGGAAACAGCCACTTCTCCTCCAACTGTTGATTCACCTGCAACTAATATTACCCAGAACTCTGAGAATGTAAAATGTGACATTTTCGCTGGAGAATGGGTACCAGATCCATCAGGGCCAAGATACAACAACGAGAGCTGCCCTGTGATTGAGTCTCATCAGAATTGTATGAAGAATGGTCGCCCCGATTCGGCCTACTTTTATTGGAGGTGGAATCCAAGAGACTGTGAGCTTCCCAAATTCAATGCACAGAGATTTCTTGCTCTTATGAGGAACAAGTCATGGGCATTTATCGGGGATTCAATTTCTCGTAACCATGTCCAGTCATTGCTTTGCCTTCTCTCCCAGGTGGAACAAGCTGTTGAGGTATACCATGACAAAGAGTACAGGTCTAAGAGATGGCTCTTCCCTTCTCACAACTTCACACTTTCAGTCATCTGGACTCCTTTCCTTGTCAAAGCAGCTACTTTTGAAGACATGAATGGAGTTTCCACTTCAGAGATCCAGCTTTATCTTGACAAACTCGATAAGACATGGACTGATCAATACAACAGCTTGGATAACCTGGTCATTTCTGGTGGGAAATGGTTCCTTAAAACTGCGATATACTATGAAAACGACACAGTCAGTGGCTGCCATTACTGCCCCGGAAAGAACTTAACCGAGCTAGGATTTGAACACGCCTATCGCAATGCTCTCCGCCTGGTTTTCAACTTCATCAAGGGCTCGGATCATAAAGCATCTGTATTATTCAGAACCACGACGCCTGACCACTTTGAGAATGGAGAGTGGTTTAGTGGAGGGTATTGCAACAGAACAGTGCCATTCAAAGAAGGCGAGGTTGATATGAAAGATGCAGACTCCGTAATGCATAACATTGAGTTGGAAGAATTCGAGAAGGCTTCGGACAAAGGAGCTGAAGAGGGAGTGCGTTTAAAGCTATTGGATACAACACACCTTTCATTGTTGAGACCCGATGGGCATCCAGGTCCTTACAGGCAGTTCCAGCCATTTGCGAAGGACCAAAATGCCAAAGTTCAGACTGACTGCCTACATTGGTGCTTGCCTGGGCCTATAGACTCCTGGAATGATTTGGTGATGGAAATGTTGATTAACGGCGAAAAATATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

444

Amino Acids

50.86

Weight (kDa)

5.57

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	92 - 144	6.3e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	145 - 436	5.9e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01430 AT4G01080
fragaria_vesca	FvH4_7g16070
malus_domestica	MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica	Prupe.2G184500_v2.0.a1
pyrus_communis	pycom01g10610 pycom07g14580
rosa_chinensis	RchiOBHm_Chr1g0359011
rosa_laevigata	RLG00000027909
rosa_multiflora	Rmu_sc0004044.1_g000006
rosa_roxburghii	Rroxscaffold_4G00297460
rosa_rugosa	Rorug01G0267100
rosa_samantha	Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana	Rw1G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	570
AciI	CCGC	1 cut(s)	901
AclWI	GGATC	3 cut(s)	302, 697, 939
AcsI	RAATTY	2 cut(s)	440, 1091
AcuI	CTGAAG	3 cut(s)	107, 681, 1140
AcyI	GRCGYC	1 cut(s)	965
AfaI	GTAC	3 cut(s)	159, 303, 587
AfiI	CCNNNNNNNGG	2 cut(s)	112, 391
AgsI	TTSAA	8 cut(s)	180, 185, 445, 504, 674, 878, 913, 1030
AjnI	CCWGG	6 cut(s)	546, 765, 903, 1186, 1267, 1283
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AluBI	AGCT	9 cut(s)	339, 433, 560, 665, 709, 756, 868, 1118, 1141
AluI	AGCT	9 cut(s)	339, 433, 560, 665, 709, 756, 868, 1118, 1141
Alw26I	GTCTC	4 cut(s)	157, 360, 417, 1165
AlwI	GGATC	3 cut(s)	302, 697, 939
AlwNI	CAGNNNCTG	2 cut(s)	169, 834
AoxI	GGCC	3 cut(s)	317, 393, 1271
ApeKI	GCWGC	3 cut(s)	339, 662, 834
ApoI	RAATTY	2 cut(s)	440, 1091
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	788
Asp718I	GGTACC	1 cut(s)	301
AspS9I	GGNCC	4 cut(s)	317, 1190, 1222, 1271
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	4 cut(s)	16, 42, 228, 1309
AvaII	GGWCC	2 cut(s)	1190, 1222
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	929
BbsI	GAAGAC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	326, 674, 821
BccI	CCATC	5 cut(s)	61, 319, 594, 1172, 1294
BceAI	ACGGC	1 cut(s)	1333
BciT130I	CCWGG	6 cut(s)	548, 767, 905, 1188, 1269, 1285
BciVI	GTATCC	1 cut(s)	1141
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	4 cut(s)	157, 360, 417, 1165
BfaI	CTAG	1 cut(s)	869
BfmI	CTRYAG	2 cut(s)	161, 1275
BfuAI	ACCTGC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	1141
BisI	GCNGC	3 cut(s)	340, 663, 835
BlsI	GCNGC	3 cut(s)	341, 664, 836
BmcAI	AGTACT	1 cut(s)	159
Bme1390I	CCNGG	7 cut(s)	548, 767, 849, 905, 1188, 1269, 1285
Bme18I	GGWCC	2 cut(s)	1190, 1222
BmgT120I	GGNCC	4 cut(s)	317, 1190, 1222, 1271
BmiI	GGNNCC	2 cut(s)	303, 791
BmrFI	CCNGG	7 cut(s)	548, 767, 849, 905, 1188, 1269, 1285
BmsI	GCATC	3 cut(s)	950, 1045, 1192
BpiI	GAAGAC	1 cut(s)	681
BpmI	CTGGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	1182
BsaHI	GRCGYC	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	1165
BsaJI	CCNNGG	3 cut(s)	546, 847, 1268
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 285, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 391
Bse1I	ACTGG	1 cut(s)	523
Bse3DI	GCAATG	2 cut(s)	527, 898
Bse8I	GATNNNNATC	1 cut(s)	1182
BseBI	CCWGG	6 cut(s)	548, 767, 905, 1188, 1269, 1285
BseDI	CCNNGG	3 cut(s)	546, 847, 1268
BseGI	GGATG	1 cut(s)	1183
BseJI	GATNNNNATC	1 cut(s)	1182
BseLI	CCNNNNNNNGG	2 cut(s)	112, 391
BseMI	GCAATG	2 cut(s)	527, 898
BseMII	CTCAG	2 cut(s)	168, 255
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	326, 674, 821
BshFI	GGCC	3 cut(s)	319, 395, 1273
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	849
BslI	CCNNNNNNNGG	2 cut(s)	112, 391
BsmAI	GTCTC	4 cut(s)	157, 360, 417, 1165
BsnI	GGCC	3 cut(s)	319, 395, 1273
Bso31I	GGTCTC	1 cut(s)	1165
Bsp1286I	GDGCHC	1 cut(s)	929
Bsp143I	GATC	4 cut(s)	307, 702, 742, 931
BspACI	CCGC	1 cut(s)	901
BspANI	GGCC	3 cut(s)	319, 395, 1273
BspCNI	CTCAG	2 cut(s)	167, 256
BspLI	GGNNCC	2 cut(s)	303, 791
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	3 cut(s)	302, 697, 939
BspQI	GCTCTTC	1 cut(s)	611
BspT107I	GGYRCC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	1165
BsrDI	GCAATG	2 cut(s)	527, 898
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	546, 847, 1268
BssMI	GATC	4 cut(s)	307, 702, 742, 931
BssNAI	GTATAC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	965
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	6 cut(s)	548, 767, 905, 1188, 1269, 1285
Bst4CI	ACNGT	4 cut(s)	229, 428, 826, 1021
Bst6I	CTCTTC	2 cut(s)	611, 1116
BstACI	GRCGYC	1 cut(s)	965
BstC8I	GCNNGC	1 cut(s)	1265
BstDEI	CTNAG	4 cut(s)	109, 154, 264, 594
BstF5I	GGATG	1 cut(s)	1183
BstKTI	GATC	4 cut(s)	310, 705, 745, 934
BstMAI	GTCTC	4 cut(s)	157, 360, 417, 1165
BstMBI	GATC	4 cut(s)	307, 702, 742, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	843, 1138, 1207
BstNI	CCWGG	6 cut(s)	548, 767, 905, 1188, 1269, 1285
BstSCI	CCNGG	7 cut(s)	546, 765, 847, 903, 1186, 1267, 1283
BstSFI	CTRYAG	2 cut(s)	161, 1275
BstV1I	GCAGC	3 cut(s)	326, 674, 821
BstV2I	GAAGAC	1 cut(s)	681
BstX2I	RGATCY	2 cut(s)	307, 702
BstYI	RGATCY	2 cut(s)	307, 702
BstZ17I	GTATAC	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	1141
BsuRI	GGCC	3 cut(s)	319, 395, 1273
BtsCI	GGATG	1 cut(s)	1183
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	3 cut(s)	167, 835, 1026
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	1265
CaiI	CAGNNNCTG	2 cut(s)	169, 834
Cfr13I	GGNCC	4 cut(s)	317, 1190, 1222, 1271
CseI	GACGC	1 cut(s)	973
CsiI	ACCWGGT	1 cut(s)	765
Csp6I	GTAC	3 cut(s)	158, 302, 586
CviAII	CATG	7 cut(s)	13, 77, 483, 518, 575, 679, 735
CviQI	GTAC	3 cut(s)	158, 302, 586
DdeI	CTNAG	4 cut(s)	109, 154, 264, 594
DpnI	GATC	4 cut(s)	309, 704, 744, 933
DpnII	GATC	4 cut(s)	307, 702, 742, 931
DraI	TTTAAA	1 cut(s)	1137
Eam1104I	CTCTTC	2 cut(s)	611, 1116
EarI	CTCTTC	2 cut(s)	611, 1116
EciI	GGCGGA	1 cut(s)	890
Eco24I	GRGCYC	1 cut(s)	929
Eco31I	GGTCTC	1 cut(s)	1165
Eco47I	GGWCC	2 cut(s)	1190, 1222
Eco57I	CTGAAG	3 cut(s)	107, 681, 1140
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	1 cut(s)	1091
EcoRII	CCWGG	6 cut(s)	546, 765, 903, 1186, 1267, 1283
EcoT22I	ATGCAT	1 cut(s)	1074
EcoT38I	GRGCYC	1 cut(s)	929
FaeI	CATG	7 cut(s)	16, 80, 486, 521, 578, 682, 738
FatI	CATG	7 cut(s)	12, 76, 482, 517, 574, 678, 734
FbaI	TGATCA	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	3 cut(s)	340, 663, 835
FokI	GGATG	1 cut(s)	1170
FriOI	GRGCYC	1 cut(s)	929
Fsp4HI	GCNGC	3 cut(s)	340, 663, 835
FspBI	CTAG	1 cut(s)	869
GluI	GCNGC	3 cut(s)	340, 663, 835
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	319, 395, 1273
HapII	CCGG	1 cut(s)	849
HgaI	GACGC	1 cut(s)	973
Hin1I	GRCGYC	1 cut(s)	965
Hin1II	CATG	7 cut(s)	16, 80, 486, 521, 578, 682, 738
HpaII	CCGG	1 cut(s)	849
HphI	GGTGA	4 cut(s)	16, 42, 228, 1309
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	9 cut(s)	87, 136, 265, 363, 700, 931, 956, 1108, 1242
Hpy188III	TCNNGA	3 cut(s)	640, 716, 1096
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	967
HpyAV	CCTTC	6 cut(s)	186, 548, 621, 1028, 1093, 1213
HpyCH4III	ACNGT	4 cut(s)	229, 428, 826, 1021
HpyCH4V	TGCA	6 cut(s)	95, 242, 449, 1011, 1058, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	843, 1138, 1207
HpyF3I	CTNAG	4 cut(s)	109, 154, 264, 594
Hsp92I	GRCGYC	1 cut(s)	965
Hsp92II	CATG	7 cut(s)	16, 80, 486, 521, 578, 682, 738
KpnI	GGTACC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	307, 702, 742, 931
LguI	GCTCTTC	1 cut(s)	611
LmnI	GCTCC	1 cut(s)	1115
Lsp1109I	GCAGC	3 cut(s)	326, 674, 821
LweI	GCATC	3 cut(s)	950, 1045, 1192
MabI	ACCWGGT	1 cut(s)	765
MaeI	CTAG	1 cut(s)	869
MaeIII	GTNAC	2 cut(s)	278, 512
MalI	GATC	4 cut(s)	309, 704, 744, 933
MboI	GATC	4 cut(s)	307, 702, 742, 931
MboII	GAAGA	5 cut(s)	385, 598, 686, 1100, 1133
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	307, 702
MhlI	GDGCHC	1 cut(s)	929
MluCI	AATT	5 cut(s)	180, 364, 440, 504, 1091
MlyI	GAGTC	5 cut(s)	32, 362, 637, 1055, 1274
MmeI	TCCRAC	2 cut(s)	248, 1065
Mph1103I	ATGCAT	1 cut(s)	1074
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	4 cut(s)	795, 860, 1136, 1314
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	849
MspR9I	CCNGG	7 cut(s)	548, 767, 849, 905, 1188, 1269, 1285
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	6 cut(s)	548, 767, 905, 1188, 1269, 1285
MwoI	GCNNNNNNNGC	3 cut(s)	843, 1138, 1207
NciI	CCSGG	1 cut(s)	849
NdeII	GATC	4 cut(s)	307, 702, 742, 931
NlaIII	CATG	7 cut(s)	16, 80, 486, 521, 578, 682, 738
NlaIV	GGNNCC	2 cut(s)	303, 791
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	1074
PaqCI	CACCTGC	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	611
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	6 cut(s)	137, 142, 233, 389, 415, 500
PflFI	GACNNNGTC	1 cut(s)	824
PfoI	TCCNGGA	1 cut(s)	1283
PkrI	GCNGC	3 cut(s)	341, 664, 836
PleI	GAGTC	5 cut(s)	31, 361, 637, 1055, 1274
PpsI	GAGTC	5 cut(s)	31, 361, 637, 1055, 1274
PpuMI	RGGWCCY	1 cut(s)	1190
Psp5II	RGGWCCY	1 cut(s)	1190
Psp6I	CCWGG	6 cut(s)	546, 765, 903, 1186, 1267, 1283
PspGI	CCWGG	6 cut(s)	546, 765, 903, 1186, 1267, 1283
PspN4I	GGNNCC	2 cut(s)	303, 791
PspPI	GGNCC	4 cut(s)	317, 1190, 1222, 1271
PspPPI	RGGWCCY	1 cut(s)	1190
PstNI	CAGNNNCTG	2 cut(s)	169, 834
PsuI	RGATCY	2 cut(s)	307, 702
PsyI	GACNNNGTC	1 cut(s)	824
RsaI	GTAC	3 cut(s)	159, 303, 587
RsaNI	GTAC	3 cut(s)	158, 302, 586
RseI	CAYNNNNRTG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	611
SaqAI	TTAA	4 cut(s)	795, 860, 1136, 1314
SatI	GCNGC	3 cut(s)	340, 663, 835
Sau3AI	GATC	4 cut(s)	307, 702, 742, 931
Sau96I	GGNCC	4 cut(s)	317, 1190, 1222, 1271
ScaI	AGTACT	1 cut(s)	159
SchI	GAGTC	5 cut(s)	32, 362, 637, 1055, 1274
ScrFI	CCNGG	7 cut(s)	548, 767, 849, 905, 1188, 1269, 1285
SduI	GDGCHC	1 cut(s)	929
SexAI	ACCWGGT	1 cut(s)	765
SfaNI	GCATC	3 cut(s)	950, 1045, 1192
SfcI	CTRYAG	2 cut(s)	161, 1275
SinI	GGWCC	2 cut(s)	1190, 1222
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	5 cut(s)	180, 364, 440, 504, 1091
SsiI	CCGC	1 cut(s)	901
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	869
StyD4I	CCNGG	7 cut(s)	546, 765, 847, 903, 1186, 1267, 1283
TaaI	ACNGT	4 cut(s)	229, 428, 826, 1021
TaqI	TCGA	4 cut(s)	140, 145, 726, 1095
TasI	AATT	5 cut(s)	180, 364, 440, 504, 1091
TatI	WGTACW	2 cut(s)	157, 585
TfiI	GAWTC	6 cut(s)	137, 142, 233, 389, 415, 500
Tru1I	TTAA	4 cut(s)	795, 860, 1136, 1314
Tru9I	TTAA	4 cut(s)	795, 860, 1136, 1314
TscAI	CASTG	3 cut(s)	174, 835, 1026
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	339, 662, 834
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	8 cut(s)	29, 36, 386, 695, 828, 907, 1064, 1152
TspGWI	ACGGA	1 cut(s)	1054
TspRI	CASTG	3 cut(s)	174, 835, 1026
Tth111I	GACNNNGTC	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	1190, 1222
XapI	RAATTY	2 cut(s)	440, 1091
XcmI	CCANNNNNNNNNTGG	1 cut(s)	980
XmiI	GTMKAC	1 cut(s)	570
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	1 cut(s)	869
ZrmI	AGTACT	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.