MD07G1146500.v1.1

Protein trichome birefringence-like 25

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
21355332 .. 21359215
3884 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1146500.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGGTGAAGGAACTGAGGGTTGAATCGAACCCAATATTGTCATTCCACAAAAACAACCATGCGTTTGTGAAGTTTGCAGTCTCTTTTCTCTTAGTTGGTCTCGCTTTTCGACTCTTGTTTTCCGATTCTGTACTTCCTATCGGATTAAATTTACCAGTAGAGCCACCTCCTCTTGCATCTGCAGACCAACAACAAACAGACTCCTCCTCCTCCTCCTCTGTTTCCGATTCTTCTTTATTTCCTGGTCAAATTCAAAACTCTACAATTGTTGATTTTCCTGGAAATACCTCCCAAACATATGACAATGTAAAGTGTGACCTTTTTACCGGAGATTGGGTACCAGATCCGTCAGGTCCAAGATACACTAGTGAAAGCTGCCATGTGGTGGAACCTCATCAGAATTGTATGAAGAACGGTCGCCCCGATTCCGAGTACTTTTACTGGAGGTGGAACCCAAGAGACTGTGAGCTACCCAAGTTCAATCCGCAGAGTTTTCTTGGTATAATGAGGAACAAATCATGGGCCTTCATTGGTGATTCGATTTCGCGTAACCATGTGCAGTCATTGCTTTGCATTCTCTCTCAGGTGGAGCAAGCTGTTGAGGTATACCATGACAAAGAATACAGGTCTAAAAGATGGCTTTTTCCTTCTTACAATTTCACTGTTTCGGTAATTTGGACTCCGTTTCTCGTCAAAGCAGCTATTTTTGAAGACATGAATGGAGTTTCTACTTCCGAAATCCAGCTTTATCTTGACGAGCTCGACAAGACATGGACCGATCAGTATAGTAGCTTGGATTACGTGGTGATTGCCGGAGGAAAATGGTTCCTTAAAACCGCAATTTACCATGAAAACAACACGGTCAGGGGCTGCCACTACTGCCCTGGAAAGAAATTAACGGAGTTTGGGTTTGACTACGCCTATCGCAGTGCCCTCCGTCTGGTTTTCAATTTCATCACTCGTTCGGATCATAAAGCGCTTGTATTATTTAGAACCACCACGCCTGACCATTTTGAGAATGGAGAGTGGTTCAGTGGGGGGTATTGCAATAGATCAGTGCCATTCAAAGAGGGTGAGGTTGATATAAAAGATGTAGATGCTGCAATGCAAAACATCGAGCTGGAAGAATTCGAGAAGGCTGCGGCCGAAGGATCGGAGAAGGGGGTGAACTTTAAACTACTGGACACAACCCACCTTTCGCTATTGAGACCCGATGGGCACCCAGGTCCGTACAGGCAGTTCCAGCCATTTGCAAAGGATAAGAATGCCAAAGTCCAGAATGATTGCTTACATTGGTGCTTGCCTGGGCCAATAGACTCTTGGAATGATTTGGTTATGGAATTGTTGGTCAATGGCGAAAAATATCGATGA

Protein Analysis

457

Amino Acids

52.08

Weight (kDa)

5.5

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 104 - 156 1.3e-21 PMR5 N terminal Domain
PC-Esterase PF13839 157 - 447 1e-92 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01430 AT4G01080
fragaria_vesca FvH4_7g16070
malus_domestica MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica Prupe.2G184500_v2.0.a1
pyrus_communis pycom01g10610 pycom07g14580
rosa_chinensis RchiOBHm_Chr1g0359011
rosa_laevigata RLG00000027909
rosa_multiflora Rmu_sc0004044.1_g000006
rosa_roxburghii Rroxscaffold_4G00297460
rosa_rugosa Rorug01G0267100
rosa_samantha Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana Rw1G024930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 2 cut(s) 337, 1218
AccB7I CCANNNNNTGG 1 cut(s) 385
AccI GTMKAC 1 cut(s) 606
AccII CGCG 1 cut(s) 547
AciI CCGC 3 cut(s) 485, 837, 1142
AclWI GGATC 3 cut(s) 338, 975, 1159
AcoI YGGCCR 1 cut(s) 1143
AcsI RAATTY 3 cut(s) 148, 249, 1127
AfaI GTAC 4 cut(s) 132, 339, 434, 1232
AfeI AGCGCT 1 cut(s) 978
AfiI CCNNNNNNNGG 3 cut(s) 333, 385, 940
AgsI TTSAA 6 cut(s) 23, 254, 481, 710, 949, 1066
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 5 cut(s) 241, 277, 883, 1222, 1303
AluBI AGCT 8 cut(s) 375, 469, 596, 701, 745, 760, 792, 1120
AluI AGCT 8 cut(s) 375, 469, 596, 701, 745, 760, 792, 1120
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 4 cut(s) 85, 104, 453, 1201
AlwI GGATC 3 cut(s) 338, 975, 1159
AlwNI CAGNNNCTG 1 cut(s) 870
Aor51HI AGCGCT 1 cut(s) 978
AoxI GGCC 3 cut(s) 522, 1143, 1307
ApeKI GCWGC 5 cut(s) 375, 698, 870, 1100, 1139
ApoI RAATTY 3 cut(s) 148, 249, 1127
Asp718I GGTACC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 979
AspS9I GGNCC 5 cut(s) 353, 522, 774, 1226, 1307
AsuHPI GGTGA 5 cut(s) 16, 545, 817, 1085, 1177
AvaII GGWCC 3 cut(s) 353, 774, 1226
BaeGI GKGCMC 2 cut(s) 934, 1221
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BanI GGYRCC 2 cut(s) 337, 1218
BanII GRGCYC 1 cut(s) 762
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 5 cut(s) 362, 710, 857, 1087, 1126
BccI CCATC 2 cut(s) 630, 1208
BcgI CGANNNNNNTGC 2 cut(s) 1121, 1155
BciT130I CCWGG 5 cut(s) 243, 279, 885, 1224, 1305
BcoDI GTCTC 4 cut(s) 85, 104, 453, 1201
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 980
BisI GCNGC 6 cut(s) 376, 699, 871, 1101, 1140, 1143
BlsI GCNGC 6 cut(s) 377, 700, 872, 1102, 1141, 1144
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 5 cut(s) 243, 279, 885, 1224, 1305
Bme18I GGWCC 3 cut(s) 353, 774, 1226
BmgT120I GGNCC 5 cut(s) 353, 522, 774, 1226, 1307
BmiI GGNNCC 5 cut(s) 339, 390, 452, 827, 1220
BmrFI CCNGG 5 cut(s) 243, 279, 885, 1224, 1305
BmsI GCATC 2 cut(s) 185, 1087
BpiI GAAGAC 1 cut(s) 717
BpmI CTGGAG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 1366
BsaAI YACGTR 1 cut(s) 802
BsaI GGTCTC 2 cut(s) 104, 1201
BsaJI CCNNGG 3 cut(s) 883, 1222, 1304
BsaWI WCCGGW 1 cut(s) 326
BsaXI ACNNNNNCTCC 6 cut(s) 191, 221, 321, 351, 893, 923
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 385, 940
Bse1I ACTGG 3 cut(s) 155, 446, 1185
Bse3DI GCAATG 2 cut(s) 563, 1110
BseBI CCWGG 5 cut(s) 243, 279, 885, 1224, 1305
BseCI ATCGAT 1 cut(s) 1366
BseDI CCNNGG 3 cut(s) 883, 1222, 1304
BseLI CCNNNNNNNGG 3 cut(s) 333, 385, 940
BseMI GCAATG 2 cut(s) 563, 1110
BseMII CTCAG 2 cut(s) 5, 596
BseNI ACTGG 3 cut(s) 155, 446, 1185
BseRI GAGGAG 6 cut(s) 159, 193, 196, 199, 202, 205
BseSI GKGCMC 2 cut(s) 934, 1221
BseX3I CGGCCG 1 cut(s) 1143
BseXI GCAGC 5 cut(s) 362, 710, 857, 1087, 1126
BsgI GTGCAG 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 547
Bsh1285I CGRYCG 2 cut(s) 418, 1146
BshFI GGCC 3 cut(s) 524, 1145, 1309
BshNI GGYRCC 2 cut(s) 337, 1218
BshVI ATCGAT 1 cut(s) 1366
BsiEI CGRYCG 2 cut(s) 418, 1146
BsiHKAI GWGCWC 1 cut(s) 762
BsiSI CCGG 2 cut(s) 327, 813
BslI CCNNNNNNNGG 3 cut(s) 333, 385, 940
BsmAI GTCTC 4 cut(s) 85, 104, 453, 1201
BsmI GAATGC 2 cut(s) 573, 1270
BsnI GGCC 3 cut(s) 524, 1145, 1309
Bso31I GGTCTC 2 cut(s) 104, 1201
Bsp1286I GDGCHC 3 cut(s) 762, 934, 1221
Bsp143I GATC 5 cut(s) 343, 778, 967, 1052, 1151
BspACI CCGC 3 cut(s) 485, 837, 1142
BspANI GGCC 3 cut(s) 524, 1145, 1309
BspCNI CTCAG 2 cut(s) 6, 595
BspDI ATCGAT 1 cut(s) 1366
BspFNI CGCG 1 cut(s) 547
BspLI GGNNCC 5 cut(s) 339, 390, 452, 827, 1220
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 3 cut(s) 338, 975, 1159
BspT107I GGYRCC 2 cut(s) 337, 1218
BspTNI GGTCTC 2 cut(s) 104, 1201
BsrDI GCAATG 2 cut(s) 563, 1110
BsrI ACTGG 3 cut(s) 155, 446, 1185
BssECI CCNNGG 3 cut(s) 883, 1222, 1304
BssMI GATC 5 cut(s) 343, 778, 967, 1052, 1151
BssNAI GTATAC 1 cut(s) 607
Bst1107I GTATAC 1 cut(s) 607
Bst2UI CCWGG 5 cut(s) 243, 279, 885, 1224, 1305
Bst4CI ACNGT 4 cut(s) 416, 464, 664, 862
BstAPI GCANNNNNTGC 1 cut(s) 565
BstBAI YACGTR 1 cut(s) 802
BstC8I GCNNGC 2 cut(s) 594, 1301
BstDEI CTNAG 3 cut(s) 14, 91, 582
BstFNI CGCG 1 cut(s) 547
BstH2I RGCGCY 1 cut(s) 980
BstHHI GCGC 1 cut(s) 979
BstKTI GATC 5 cut(s) 346, 781, 970, 1055, 1154
BstMAI GTCTC 4 cut(s) 85, 104, 453, 1201
BstMBI GATC 5 cut(s) 343, 778, 967, 1052, 1151
BstMCI CGRYCG 2 cut(s) 418, 1146
BstMWI GCNNNNNNNGC 3 cut(s) 565, 879, 1243
BstNI CCWGG 5 cut(s) 243, 279, 885, 1224, 1305
BstSCI CCNGG 5 cut(s) 241, 277, 883, 1222, 1303
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 2 cut(s) 934, 1221
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 5 cut(s) 362, 710, 857, 1087, 1126
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BstZ17I GTATAC 1 cut(s) 607
BstZI CGGCCG 1 cut(s) 1143
Bsu15I ATCGAT 1 cut(s) 1366
BsuRI GGCC 3 cut(s) 524, 1145, 1309
BsuTUI ATCGAT 1 cut(s) 1366
BtsI GCAGTG 1 cut(s) 934
BtsIMutI CAGTG 4 cut(s) 660, 934, 1039, 1062
Cac8I GCNNGC 2 cut(s) 594, 1301
CaiI CAGNNNCTG 1 cut(s) 870
CfoI GCGC 1 cut(s) 979
Cfr13I GGNCC 5 cut(s) 353, 522, 774, 1226, 1307
ClaI ATCGAT 1 cut(s) 1366
Csp6I GTAC 4 cut(s) 131, 338, 433, 1231
CviAII CATG 8 cut(s) 59, 380, 519, 554, 611, 715, 771, 848
CviQI GTAC 4 cut(s) 131, 338, 433, 1231
DdeI CTNAG 3 cut(s) 14, 91, 582
DpnI GATC 5 cut(s) 345, 780, 969, 1054, 1153
DpnII GATC 5 cut(s) 343, 778, 967, 1052, 1151
DraI TTTAAA 1 cut(s) 1174
EaeI YGGCCR 1 cut(s) 1143
EagI CGGCCG 1 cut(s) 1143
Ecl136II GAGCTC 1 cut(s) 760
EclXI CGGCCG 1 cut(s) 1143
Eco24I GRGCYC 1 cut(s) 762
Eco31I GGTCTC 2 cut(s) 104, 1201
Eco47I GGWCC 3 cut(s) 353, 774, 1226
Eco47III AGCGCT 1 cut(s) 978
Eco52I CGGCCG 1 cut(s) 1143
Eco53kI GAGCTC 1 cut(s) 760
EcoICRI GAGCTC 1 cut(s) 760
EcoRI GAATTC 1 cut(s) 1127
EcoRII CCWGG 5 cut(s) 241, 277, 883, 1222, 1303
EcoT38I GRGCYC 1 cut(s) 762
FaeI CATG 8 cut(s) 62, 383, 522, 557, 614, 718, 774, 851
FatI CATG 8 cut(s) 58, 379, 518, 553, 610, 714, 770, 847
FauNDI CATATG 1 cut(s) 298
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 6 cut(s) 376, 699, 871, 1101, 1140, 1143
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 6 cut(s) 376, 699, 871, 1101, 1140, 1143
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 978
GluI GCNGC 6 cut(s) 376, 699, 871, 1101, 1140, 1143
GsuI CTGGAG 1 cut(s) 463
HaeII RGCGCY 1 cut(s) 980
HaeIII GGCC 3 cut(s) 524, 1145, 1309
HapII CCGG 2 cut(s) 327, 813
HhaI GCGC 1 cut(s) 979
Hin1II CATG 8 cut(s) 62, 383, 522, 557, 614, 718, 774, 851
Hin6I GCGC 1 cut(s) 977
HinP1I GCGC 1 cut(s) 977
HinfI GANTC 9 cut(s) 23, 111, 125, 200, 227, 425, 536, 679, 1316
HpaII CCGG 2 cut(s) 327, 813
HphI GGTGA 5 cut(s) 16, 545, 817, 1085, 1177
Hpy166II GTNNAC 2 cut(s) 607, 1168
Hpy188I TCNGA 8 cut(s) 124, 143, 226, 399, 430, 736, 967, 1156
Hpy188III TCNNGA 3 cut(s) 752, 1132, 1276
Hpy8I GTNNAC 2 cut(s) 607, 1168
HpyAV CCTTC 5 cut(s) 535, 657, 1129, 1142, 1153
HpyCH4III ACNGT 4 cut(s) 416, 464, 664, 862
HpyCH4IV ACGT 1 cut(s) 801
HpyCH4V TGCA 9 cut(s) 77, 176, 182, 559, 573, 1047, 1103, 1108, 1253
HpyF10VI GCNNNNNNNGC 3 cut(s) 565, 879, 1243
HpyF3I CTNAG 3 cut(s) 14, 91, 582
HpySE526I ACGT 1 cut(s) 801
Hsp92II CATG 8 cut(s) 62, 383, 522, 557, 614, 718, 774, 851
HspAI GCGC 1 cut(s) 977
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 5 cut(s) 343, 778, 967, 1052, 1151
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 5 cut(s) 362, 710, 857, 1087, 1126
LweI GCATC 2 cut(s) 185, 1087
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 801
MaeIII GTNAC 2 cut(s) 314, 548
MalI GATC 5 cut(s) 345, 780, 969, 1054, 1153
MboI GATC 5 cut(s) 343, 778, 967, 1052, 1151
MboII GAAGA 4 cut(s) 222, 421, 722, 1136
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 3 cut(s) 762, 934, 1221
MlyI GAGTC 4 cut(s) 105, 194, 673, 1310
MseI TTAA 4 cut(s) 146, 831, 896, 1173
MspI CCGG 2 cut(s) 327, 813
MspR9I CCNGG 5 cut(s) 243, 279, 885, 1224, 1305
MunI CAATTG 1 cut(s) 264
Mva1269I GAATGC 2 cut(s) 573, 1270
MvaI CCWGG 5 cut(s) 243, 279, 885, 1224, 1305
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 3 cut(s) 565, 879, 1243
NdeI CATATG 1 cut(s) 298
NdeII GATC 5 cut(s) 343, 778, 967, 1052, 1151
NlaIII CATG 8 cut(s) 62, 383, 522, 557, 614, 718, 774, 851
NlaIV GGNNCC 5 cut(s) 339, 390, 452, 827, 1220
NmuCI GTSAC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PctI GAATGC 2 cut(s) 573, 1270
PfeI GAWTC 5 cut(s) 23, 125, 227, 425, 536
PflMI CCANNNNNTGG 1 cut(s) 385
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 6 cut(s) 377, 700, 872, 1102, 1141, 1144
PleI GAGTC 4 cut(s) 105, 194, 673, 1310
PpsI GAGTC 4 cut(s) 105, 194, 673, 1310
Ppu21I YACGTR 1 cut(s) 802
Psp124BI GAGCTC 1 cut(s) 762
Psp6I CCWGG 5 cut(s) 241, 277, 883, 1222, 1303
PspGI CCWGG 5 cut(s) 241, 277, 883, 1222, 1303
PspN4I GGNNCC 5 cut(s) 339, 390, 452, 827, 1220
PspPI GGNCC 5 cut(s) 353, 522, 774, 1226, 1307
PsrI GAACNNNNNNTAC 2 cut(s) 1223, 1255
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 870
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 4 cut(s) 132, 339, 434, 1232
RsaNI GTAC 4 cut(s) 131, 338, 433, 1231
SacI GAGCTC 1 cut(s) 762
SaqAI TTAA 4 cut(s) 146, 831, 896, 1173
SatI GCNGC 6 cut(s) 376, 699, 871, 1101, 1140, 1143
Sau3AI GATC 5 cut(s) 343, 778, 967, 1052, 1151
Sau96I GGNCC 5 cut(s) 353, 522, 774, 1226, 1307
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 4 cut(s) 105, 194, 673, 1310
ScrFI CCNGG 5 cut(s) 243, 279, 885, 1224, 1305
SduI GDGCHC 3 cut(s) 762, 934, 1221
SfaNI GCATC 2 cut(s) 185, 1087
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 3 cut(s) 353, 774, 1226
SpeI ACTAGT 1 cut(s) 365
SsiI CCGC 3 cut(s) 485, 837, 1142
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 762
StyD4I CCNGG 5 cut(s) 241, 277, 883, 1222, 1303
TaaI ACNGT 4 cut(s) 416, 464, 664, 862
TaiI ACGT 1 cut(s) 804
TaqI TCGA 7 cut(s) 26, 109, 539, 762, 1116, 1131, 1366
TaqII GACCGA 1 cut(s) 791
TatI WGTACW 2 cut(s) 130, 432
TauI GCSGC 1 cut(s) 1145
TfiI GAWTC 5 cut(s) 23, 125, 227, 425, 536
Tru1I TTAA 4 cut(s) 146, 831, 896, 1173
Tru9I TTAA 4 cut(s) 146, 831, 896, 1173
TscAI CASTG 4 cut(s) 667, 934, 1039, 1062
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 5 cut(s) 375, 698, 870, 1100, 1139
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 5 cut(s) 422, 517, 731, 864, 943
TspGWI ACGGA 5 cut(s) 336, 672, 914, 926, 1218
TspRI CASTG 4 cut(s) 667, 934, 1039, 1062
Van91I CCANNNNNTGG 1 cut(s) 385
VpaK11BI GGWCC 3 cut(s) 353, 774, 1226
XapI RAATTY 3 cut(s) 148, 249, 1127
XcmI CCANNNNNNNNNTGG 3 cut(s) 881, 1016, 1317
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 1 cut(s) 366
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.