Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012827

Physical Location & Seq

Genomic Coordinates Forward (+)

22611106 .. 22614750

Gene Structure 3645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTTGAAGGAGATGAGGTTTGAATCAAAGCCAGTATCGTCATTTCACAAACATAACCGTCTACTTGTGAAGTTTGCGGCCTCTTTTCTTTTGTTGGGTCTCGCTTTTCGACTCTTCTATTCTGATTCTATTGGATTATCAGTTGAGCCACCTCCTCTTGCAGACCACGAAACAGAGCCCTCCTCTGTTCCATCTTTTCCTCCTCAAACTCCTCCTGGTCCTGTCGATTTTCCTGGAAACAGCAGCCAAACATCTCAAAATGTGGCAGTAAAATGTGACATTTTTACTGGAGATTGGGTACCAGACTCATCAGGACCAAGATACACTAATGAAAGCTGCCATGTTATGGAATCTCATCAAAATTGTATGAAGAATGGCCGCCCTGATTCAGGCTACATTTACTGGAGGTGGAAGCCAACAGACTGTGAGCTACGCAAGTTCAATCCACAGAGGTTTCTTGCTCTAATGAGGAACAAATCGTGGGCTTTCGTCGGCGATTCGATCTCGCGTAACCATGTGCAATCATTGATTTGCATCCTCTCTCAGGTGGAGCAAGCTGTTGAAGTATACCATGACAAAGAATACAGGTCTAAAAGATGGCATTTCCCATCTTACAACTTCACCCTTTCGGTAATTTGGACTCCGTTCCTCATTGGAGCAGATATTTTCGAAGACATGAATGGAGTTTCTACTTCTGAAATTCAGCTTTATCTTGACAAGATCGACAAGACATGGACCAATCAATACAACAGCTTCGATTACGTGGTGATTGGCGTTGGCAAATGGTTCCTTAAGACCGCAATTTACCATGAGAACAACACAGTCAGCGGCTGCCATTCCTGCCCCGGAAAGAACTTAACCGAGTTAGGATTTGAGTACAGCTACCGCAGTGCTCTCCGTGTGGTTTTCAATTTCATCACGCGTTCAGATCATAAAGCGTCTGTATTCTTCAGAACCACCACGCCGGACCACTTTGAGAATGGAGAGTGGTTCAGTGGTGGGCATTGTAATAGGTCGGTGCCATTCAAAGAAGGTGAGGTTGATTTAAAAGATGTAGATAATGTAATGCGTAACATTGAGTTGGAAGAATTCGAGAAGGCTGCGAAAGGATCTGAAGAGGGGGTGAATTTGAAGCTACTGGACACAACCCATCTCTCATTGTTGAGATCTGATGGGCACCCAGGTCCGTACAGGCAATTCCAGCCATTTGCCAAGGATAAAAATGCCAAAGTTCAGAATGATTGCTTACATTGGTGCCTACCTGGGCCAATAGATACTTGGAATGATTTGGTGATGGAATTGTTGGTCAATGGTGACAAATATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

443

Amino Acids

50.7

Weight (kDa)

6.15

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01430 AT4G01080
fragaria_vesca	FvH4_7g16070
malus_domestica	MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica	Prupe.2G184500_v2.0.a1
pyrus_communis	pycom01g10610 pycom07g14580
rosa_chinensis	RchiOBHm_Chr1g0359011
rosa_laevigata	RLG00000027909
rosa_multiflora	Rmu_sc0004044.1_g000006
rosa_roxburghii	Rroxscaffold_4G00297460
rosa_rugosa	Rorug01G0267100
rosa_samantha	Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana	Rw1G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	4 cut(s)	298, 1018, 1176, 1254
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	2 cut(s)	61, 567
AccII	CGCG	2 cut(s)	508, 922
AciI	CCGC	5 cut(s)	77, 379, 798, 828, 886
AclWI	GGATC	1 cut(s)	1117
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	3 cut(s)	699, 1088, 1126
AcuI	CTGAAG	2 cut(s)	934, 1134
AfaI	GTAC	3 cut(s)	300, 878, 1190
AfiI	CCNNNNNNNGG	3 cut(s)	346, 389, 544
AflII	CTTAAG	1 cut(s)	791
AflIII	ACRYGT	1 cut(s)	920
AgsI	TTSAA	7 cut(s)	7, 23, 442, 563, 910, 1027, 1132
AjnI	CCWGG	4 cut(s)	214, 232, 1180, 1261
AluBI	AGCT	7 cut(s)	336, 430, 557, 706, 753, 882, 1135
AluI	AGCT	7 cut(s)	336, 430, 557, 706, 753, 882, 1135
Alw21I	GWGCWC	1 cut(s)	895
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	1117
AlwNI	CAGNNNCTG	1 cut(s)	831
AoxI	GGCC	3 cut(s)	78, 376, 1265
ApeKI	GCWGC	4 cut(s)	243, 336, 831, 1100
ApoI	RAATTY	3 cut(s)	699, 1088, 1126
Asp718I	GGTACC	1 cut(s)	298
AspS9I	GGNCC	6 cut(s)	218, 314, 735, 967, 1184, 1265
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	6 cut(s)	613, 778, 1046, 1135, 1303, 1325
AsuII	TTCGAA	1 cut(s)	669
AvaII	GGWCC	5 cut(s)	218, 314, 735, 967, 1184
BaeGI	GKGCMC	1 cut(s)	1179
BanI	GGYRCC	4 cut(s)	298, 1018, 1176, 1254
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	4 cut(s)	255, 323, 818, 1087
BccI	CCATC	6 cut(s)	199, 591, 616, 1158, 1166, 1288
BcgI	CGANNNNNNTGC	2 cut(s)	1082, 1116
BciT130I	CCWGG	4 cut(s)	216, 234, 1182, 1263
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	791
BglII	AGATCT	1 cut(s)	1166
BisI	GCNGC	7 cut(s)	78, 244, 337, 379, 829, 832, 1101
BlsI	GCNGC	7 cut(s)	79, 245, 338, 380, 830, 833, 1102
Bme1390I	CCNGG	5 cut(s)	216, 234, 846, 1182, 1263
Bme18I	GGWCC	5 cut(s)	218, 314, 735, 967, 1184
BmgT120I	GGNCC	6 cut(s)	218, 314, 735, 967, 1184, 1265
BmiI	GGNNCC	5 cut(s)	300, 788, 1020, 1178, 1256
BmrFI	CCNGG	5 cut(s)	216, 234, 846, 1182, 1263
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	678
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	2 cut(s)	309, 424
Bpu14I	TTCGAA	1 cut(s)	669
BpuMI	CCSGG	1 cut(s)	846
Bsa29I	ATCGAT	1 cut(s)	1324
BsaAI	YACGTR	1 cut(s)	763
BsaBI	GATNNNNATC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	844, 1180, 1212, 1262
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 389, 544
Bse1I	ACTGG	4 cut(s)	32, 292, 407, 1143
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	4 cut(s)	216, 234, 1182, 1263
BseCI	ATCGAT	1 cut(s)	1324
BseDI	CCNNGG	4 cut(s)	844, 1180, 1212, 1262
BseGI	GGATG	1 cut(s)	534
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	3 cut(s)	346, 389, 544
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	4 cut(s)	32, 292, 407, 1143
BseRI	GAGGAG	4 cut(s)	144, 172, 192, 201
BseSI	GKGCMC	1 cut(s)	1179
BseXI	GCAGC	4 cut(s)	255, 323, 818, 1087
Bsh1236I	CGCG	2 cut(s)	508, 922
BshFI	GGCC	3 cut(s)	80, 378, 1267
BshNI	GGYRCC	4 cut(s)	298, 1018, 1176, 1254
BshVI	ATCGAT	1 cut(s)	1324
BsiHKAI	GWGCWC	1 cut(s)	895
BsiSI	CCGG	2 cut(s)	846, 965
BslI	CCNNNNNNNGG	3 cut(s)	346, 389, 544
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	80, 378, 1267
Bso31I	GGTCTC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	669
Bsp1286I	GDGCHC	3 cut(s)	180, 895, 1179
Bsp143I	GATC	5 cut(s)	501, 720, 928, 1109, 1166
BspACI	CCGC	5 cut(s)	77, 379, 798, 828, 886
BspANI	GGCC	3 cut(s)	80, 378, 1267
BspCNI	CTCAG	1 cut(s)	556
BspDI	ATCGAT	1 cut(s)	1324
BspFNI	CGCG	2 cut(s)	508, 922
BspLI	GGNNCC	5 cut(s)	300, 788, 1020, 1178, 1256
BspPI	GGATC	1 cut(s)	1117
BspT104I	TTCGAA	1 cut(s)	669
BspT107I	GGYRCC	4 cut(s)	298, 1018, 1176, 1254
BspTI	CTTAAG	1 cut(s)	791
BspTNI	GGTCTC	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	32, 292, 407, 1143
BssECI	CCNNGG	4 cut(s)	844, 1180, 1212, 1262
BssMI	GATC	5 cut(s)	501, 720, 928, 1109, 1166
BssNAI	GTATAC	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	1212
Bst1107I	GTATAC	1 cut(s)	568
Bst2UI	CCWGG	4 cut(s)	216, 234, 1182, 1263
Bst4CI	ACNGT	3 cut(s)	59, 425, 823
Bst6I	CTCTTC	2 cut(s)	119, 1110
BstAFI	CTTAAG	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	763
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	543
BstENI	CCTNNNNNAGG	2 cut(s)	387, 542
BstF5I	GGATG	1 cut(s)	534
BstFNI	CGCG	2 cut(s)	508, 922
BstKTI	GATC	5 cut(s)	504, 723, 931, 1112, 1169
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	5 cut(s)	501, 720, 928, 1109, 1166
BstMWI	GCNNNNNNNGC	2 cut(s)	840, 1201
BstNI	CCWGG	4 cut(s)	216, 234, 1182, 1263
BstSCI	CCNGG	5 cut(s)	214, 232, 844, 1180, 1261
BstSLI	GKGCMC	1 cut(s)	1179
BstUI	CGCG	2 cut(s)	508, 922
BstV1I	GCAGC	4 cut(s)	255, 323, 818, 1087
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	2 cut(s)	1109, 1166
BstYI	RGATCY	2 cut(s)	1109, 1166
BstZ17I	GTATAC	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	1324
BsuRI	GGCC	3 cut(s)	80, 378, 1267
BsuTUI	ATCGAT	1 cut(s)	1324
BtsCI	GGATG	1 cut(s)	534
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	2 cut(s)	895, 1000
Cac8I	GCNNGC	1 cut(s)	555
CaiI	CAGNNNCTG	1 cut(s)	831
Cfr13I	GGNCC	6 cut(s)	218, 314, 735, 967, 1184, 1265
ClaI	ATCGAT	1 cut(s)	1324
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	3 cut(s)	299, 877, 1189
CviAII	CATG	6 cut(s)	341, 515, 572, 676, 732, 809
CviQI	GTAC	3 cut(s)	299, 877, 1189
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	5 cut(s)	503, 722, 930, 1111, 1168
DpnII	GATC	5 cut(s)	501, 720, 928, 1109, 1166
DraI	TTTAAA	1 cut(s)	1047
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	119, 1110
EarI	CTCTTC	2 cut(s)	119, 1110
Eco130I	CCWWGG	1 cut(s)	1212
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	5 cut(s)	218, 314, 735, 967, 1184
Eco57I	CTGAAG	2 cut(s)	934, 1134
EcoNI	CCTNNNNNAGG	2 cut(s)	387, 542
EcoRI	GAATTC	1 cut(s)	1088
EcoRII	CCWGG	4 cut(s)	214, 232, 1180, 1261
EcoT14I	CCWWGG	1 cut(s)	1212
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	1212
FaeI	CATG	6 cut(s)	344, 518, 575, 679, 735, 812
FatI	CATG	6 cut(s)	340, 514, 571, 675, 731, 808
FblI	GTMKAC	2 cut(s)	61, 567
Fnu4HI	GCNGC	7 cut(s)	78, 244, 337, 379, 829, 832, 1101
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	7 cut(s)	78, 244, 337, 379, 829, 832, 1101
GluI	GCNGC	7 cut(s)	78, 244, 337, 379, 829, 832, 1101
GsuI	CTGGAG	2 cut(s)	309, 424
HaeIII	GGCC	3 cut(s)	80, 378, 1267
HapII	CCGG	2 cut(s)	846, 965
HgaI	GACGC	1 cut(s)	927
Hin1II	CATG	6 cut(s)	344, 518, 575, 679, 735, 812
HinfI	GANTC	8 cut(s)	23, 111, 125, 305, 350, 386, 497, 640
HpaII	CCGG	2 cut(s)	846, 965
HphI	GGTGA	6 cut(s)	613, 778, 1046, 1135, 1303, 1325
Hpy166II	GTNNAC	2 cut(s)	62, 568
Hpy188I	TCNGA	7 cut(s)	124, 697, 928, 953, 1114, 1171, 1236
Hpy188III	TCNNGA	3 cut(s)	312, 713, 1093
Hpy8I	GTNNAC	2 cut(s)	62, 568
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	1025, 1090
HpyCH4III	ACNGT	3 cut(s)	59, 425, 823
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	3 cut(s)	161, 520, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	840, 1201
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	6 cut(s)	344, 518, 575, 679, 735, 812
KpnI	GGTACC	1 cut(s)	302
Kzo9I	GATC	5 cut(s)	501, 720, 928, 1109, 1166
LmnI	GCTCC	2 cut(s)	550, 656
Lsp1109I	GCAGC	4 cut(s)	255, 323, 818, 1087
LweI	GCATC	1 cut(s)	543
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	4 cut(s)	275, 509, 1070, 1313
MalI	GATC	5 cut(s)	503, 722, 930, 1111, 1168
MboI	GATC	5 cut(s)	501, 720, 928, 1109, 1166
MboII	GAAGA	6 cut(s)	106, 382, 683, 940, 1097, 1127
MflI	RGATCY	2 cut(s)	1109, 1166
MhlI	GDGCHC	3 cut(s)	180, 895, 1179
MluCI	AATT	9 cut(s)	361, 633, 699, 801, 910, 1088, 1126, 1196, 1298
MluI	ACGCGT	1 cut(s)	920
MlyI	GAGTC	3 cut(s)	105, 299, 634
MmeI	TCCRAC	1 cut(s)	1062
MseI	TTAA	3 cut(s)	792, 857, 1046
MspA1I	CMGCKG	1 cut(s)	828
MspCI	CTTAAG	1 cut(s)	791
MspI	CCGG	2 cut(s)	846, 965
MspR9I	CCNGG	5 cut(s)	216, 234, 846, 1182, 1263
MvaI	CCWGG	4 cut(s)	216, 234, 1182, 1263
MvnI	CGCG	2 cut(s)	508, 922
MwoI	GCNNNNNNNGC	2 cut(s)	840, 1201
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	5 cut(s)	501, 720, 928, 1109, 1166
NlaIII	CATG	6 cut(s)	344, 518, 575, 679, 735, 812
NlaIV	GGNNCC	5 cut(s)	300, 788, 1020, 1178, 1256
NmuCI	GTSAC	2 cut(s)	275, 1313
NspV	TTCGAA	1 cut(s)	669
PfeI	GAWTC	5 cut(s)	23, 125, 350, 386, 497
PflMI	CCANNNNNTGG	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	7 cut(s)	79, 245, 338, 380, 830, 833, 1102
PleI	GAGTC	3 cut(s)	105, 299, 634
PpsI	GAGTC	3 cut(s)	105, 299, 634
Ppu21I	YACGTR	1 cut(s)	763
Psp6I	CCWGG	4 cut(s)	214, 232, 1180, 1261
PspGI	CCWGG	4 cut(s)	214, 232, 1180, 1261
PspN4I	GGNNCC	5 cut(s)	300, 788, 1020, 1178, 1256
PspPI	GGNCC	6 cut(s)	218, 314, 735, 967, 1184, 1265
PstNI	CAGNNNCTG	1 cut(s)	831
PsuI	RGATCY	2 cut(s)	1109, 1166
RsaI	GTAC	3 cut(s)	300, 878, 1190
RsaNI	GTAC	3 cut(s)	299, 877, 1189
SaqAI	TTAA	3 cut(s)	792, 857, 1046
SatI	GCNGC	7 cut(s)	78, 244, 337, 379, 829, 832, 1101
Sau3AI	GATC	5 cut(s)	501, 720, 928, 1109, 1166
Sau96I	GGNCC	6 cut(s)	218, 314, 735, 967, 1184, 1265
SchI	GAGTC	3 cut(s)	105, 299, 634
ScrFI	CCNGG	5 cut(s)	216, 234, 846, 1182, 1263
SduI	GDGCHC	3 cut(s)	180, 895, 1179
SfaNI	GCATC	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	669
SinI	GGWCC	5 cut(s)	218, 314, 735, 967, 1184
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	9 cut(s)	361, 633, 699, 801, 910, 1088, 1126, 1196, 1298
SsiI	CCGC	5 cut(s)	77, 379, 798, 828, 886
StyD4I	CCNGG	5 cut(s)	214, 232, 844, 1180, 1261
StyI	CCWWGG	1 cut(s)	1212
TaaI	ACNGT	3 cut(s)	59, 425, 823
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	8 cut(s)	109, 225, 500, 669, 723, 756, 1092, 1324
TasI	AATT	9 cut(s)	361, 633, 699, 801, 910, 1088, 1126, 1196, 1298
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	3 cut(s)	80, 381, 831
TfiI	GAWTC	5 cut(s)	23, 125, 350, 386, 497
Tru1I	TTAA	3 cut(s)	792, 857, 1046
Tru9I	TTAA	3 cut(s)	792, 857, 1046
TscAI	CASTG	2 cut(s)	895, 1000
TseFI	GTSAC	2 cut(s)	275, 1313
TseI	GCWGC	4 cut(s)	243, 336, 831, 1100
Tsp45I	GTSAC	2 cut(s)	275, 1313
TspDTI	ATGAA	4 cut(s)	345, 383, 692, 904
TspGWI	ACGGA	3 cut(s)	633, 887, 1176
TspRI	CASTG	2 cut(s)	895, 1000
Van91I	CCANNNNNTGG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	791
VpaK11BI	GGWCC	5 cut(s)	218, 314, 735, 967, 1184
XagI	CCTNNNNNAGG	2 cut(s)	387, 542
XapI	RAATTY	3 cut(s)	699, 1088, 1126
XcmI	CCANNNNNNNNNTGG	2 cut(s)	977, 1275
XmiI	GTMKAC	2 cut(s)	61, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.