Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012827

Physical Location & Seq

Genomic Coordinates Forward (+)

11388140 .. 11390107

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTGAAGGAAACGAGGGTTGAATCGAAACCAACATTGTCATTCCACAAAAACAACCATGTATTTGTGAAGTTTGCAGTCTGTTTTGTCTTAGTTGGTCTCGCTTTTCGACTCTTGTTTTCCGATTCTGCACTTTCTATCGGCATAAATTTACCAGTAGAGCCACCTTCTCTTGCAGCTGCAGACCAGCAAGAAACAGAATCCTCCTCCTCCTCTGCTTCTGATTCTTCTTTATTTCCTGTCCAAACTCAAAACTCTACAATTGTTGATTTTCCTGGAAATAACTCTCAAACATATGACAATGTAAAGTGTGACCTTTTTACTGGAGATTGGGTACCAGACCCATCAGGTCCAAGATACACCAACGAAAGCTGCCATGTGATGGAATCTCATCAGAATTGTATGAAGAACGGTCGCCCCGATTCCGAGTACTTTTACTGGAGGTGGAATCCAAGAGACTGTGAGCTACCCAAGTTCAATCCGCAGAGTTTTCTTGCTACGATGAGGAACAAATCATGGGCCTTCATTGGCGATTCGATTTCGCGTAACCATGTCCAGTCATTGCTTTGCATTCTCTCTCAGGTGGAGCAAGCTGTTGAAGTATACCATGACAAAGAATACAGGTCCAAAAGATGGCTTTTCCCCTCTTACAACTTCACCCTTTCGGTAATTTGGACTCCGTTTCTCGTCAAAGCGGGTATTTTCGAAGACATGAATGGAGTTTCTACTTCCGAAATCCAGCTTTATCTTGACGAGCTCGACAAGACATGGACTGATCAGTATAGCAGCTTGGATTATGTGGTGATTGCCGGAGGGAAATGGTTTCTAAAGACTGCAATTTACCATGAAAACAACACGGTCAGTGGCTGCCATTACTGTCCCGGAAAGAACTTGACAGAGTTAGGGTTTGAGTACGCATATCGCAATGCCCTCCGTCTGGTTTTCAATTTCATCACCCGTTCGGATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

324

Amino Acids

36.98

Weight (kDa)

5.64

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01430 AT4G01080
fragaria_vesca	FvH4_7g16070
malus_domestica	MD01G1077000.v1.1 MD07G1146500.v1.1
prunus_persica	Prupe.2G184500_v2.0.a1
pyrus_communis	pycom01g10610 pycom07g14580
rosa_chinensis	RchiOBHm_Chr1g0359011
rosa_laevigata	RLG00000027909
rosa_multiflora	Rmu_sc0004044.1_g000006
rosa_roxburghii	Rroxscaffold_4G00297460
rosa_rugosa	Rorug01G0267100
rosa_samantha	Rh1AG280400 Rh1BG247500 Rh1CG264800 Rh1DG275900
rosa_wichuraiana	Rw1G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	334
AccB7I	CCANNNNNTGG	2 cut(s)	382, 633
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	1 cut(s)	544
AciI	CCGC	2 cut(s)	482, 695
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	3 cut(s)	336, 431, 914
AfiI	CCNNNNNNNGG	3 cut(s)	382, 633, 937
AgsI	TTSAA	4 cut(s)	23, 478, 599, 946
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	7 cut(s)	179, 372, 466, 593, 742, 757, 789
AluI	AGCT	7 cut(s)	179, 372, 466, 593, 742, 757, 789
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	2 cut(s)	104, 450
AlwNI	CAGNNNCTG	1 cut(s)	867
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	5 cut(s)	176, 179, 372, 786, 867
ApoI	RAATTY	1 cut(s)	148
Asp718I	GGTACC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	350, 519, 624
AsuC2I	CCSGG	1 cut(s)	882
AsuHPI	GGTGA	4 cut(s)	16, 649, 814, 946
AsuII	TTCGAA	1 cut(s)	705
AvaII	GGWCC	2 cut(s)	350, 624
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	759
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	5 cut(s)	166, 188, 359, 798, 854
BccI	CCATC	3 cut(s)	352, 376, 627
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	2 cut(s)	104, 450
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	5 cut(s)	177, 180, 373, 787, 868
BlsI	GCNGC	5 cut(s)	178, 181, 374, 788, 869
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	276, 882
Bme18I	GGWCC	2 cut(s)	350, 624
BmgT120I	GGNCC	3 cut(s)	350, 519, 624
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	2 cut(s)	276, 882
BpiI	GAAGAC	1 cut(s)	714
BpmI	CTGGAG	2 cut(s)	345, 460
Bpu14I	TTCGAA	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	882
Bsa29I	ATCGAT	1 cut(s)	967
BsaI	GGTCTC	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 633, 937
Bse1I	ACTGG	4 cut(s)	155, 328, 443, 556
Bse3DI	GCAATG	2 cut(s)	560, 931
BseBI	CCWGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	967
BseLI	CCNNNNNNNGG	3 cut(s)	382, 633, 937
BseMI	GCAATG	2 cut(s)	560, 931
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	4 cut(s)	155, 328, 443, 556
BseRI	GAGGAG	3 cut(s)	196, 199, 202
BseXI	GCAGC	5 cut(s)	166, 188, 359, 798, 854
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	967
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	759
BsiSI	CCGG	2 cut(s)	810, 882
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	3 cut(s)	382, 633, 937
BsmAI	GTCTC	2 cut(s)	104, 450
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp143I	GATC	2 cut(s)	775, 964
BspACI	CCGC	2 cut(s)	482, 695
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	1 cut(s)	592
BspDI	ATCGAT	1 cut(s)	967
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	705
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	560, 931
BsrI	ACTGG	4 cut(s)	155, 328, 443, 556
BssMI	GATC	2 cut(s)	775, 964
BssNAI	GTATAC	1 cut(s)	604
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	4 cut(s)	413, 461, 859, 878
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	2 cut(s)	91, 579
BstFNI	CGCG	1 cut(s)	544
BstKTI	GATC	2 cut(s)	778, 967
BstMAI	GTCTC	2 cut(s)	104, 450
BstMBI	GATC	2 cut(s)	775, 964
BstMCI	CGRYCG	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	274, 880
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	5 cut(s)	166, 188, 359, 798, 854
BstV2I	GAAGAC	1 cut(s)	714
BstZ17I	GTATAC	1 cut(s)	604
Bsu15I	ATCGAT	1 cut(s)	967
BsuRI	GGCC	1 cut(s)	521
BsuTUI	ATCGAT	1 cut(s)	967
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	867
Cfr13I	GGNCC	3 cut(s)	350, 519, 624
ClaI	ATCGAT	1 cut(s)	967
Csp6I	GTAC	3 cut(s)	335, 430, 913
CviAII	CATG	8 cut(s)	59, 377, 516, 551, 608, 712, 768, 845
CviQI	GTAC	3 cut(s)	335, 430, 913
DdeI	CTNAG	2 cut(s)	91, 579
DpnI	GATC	2 cut(s)	777, 966
DpnII	GATC	2 cut(s)	775, 964
Ecl136II	GAGCTC	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	350, 624
Eco53kI	GAGCTC	1 cut(s)	757
EcoICRI	GAGCTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	8 cut(s)	62, 380, 519, 554, 611, 715, 771, 848
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	8 cut(s)	58, 376, 515, 550, 607, 711, 767, 844
FauI	CCCGC	1 cut(s)	688
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	5 cut(s)	177, 180, 373, 787, 868
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	5 cut(s)	177, 180, 373, 787, 868
GluI	GCNGC	5 cut(s)	177, 180, 373, 787, 868
GsuI	CTGGAG	2 cut(s)	345, 460
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	2 cut(s)	810, 882
Hin1II	CATG	8 cut(s)	62, 380, 519, 554, 611, 715, 771, 848
HpaII	CCGG	2 cut(s)	810, 882
HphI	GGTGA	4 cut(s)	16, 649, 814, 946
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	6 cut(s)	124, 223, 396, 427, 733, 964
Hpy188III	TCNNGA	1 cut(s)	749
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	2 cut(s)	177, 532
HpyCH4III	ACNGT	4 cut(s)	413, 461, 859, 878
HpyCH4V	TGCA	6 cut(s)	77, 131, 176, 182, 570, 836
HpyF3I	CTNAG	2 cut(s)	91, 579
Hsp92II	CATG	8 cut(s)	62, 380, 519, 554, 611, 715, 771, 848
KpnI	GGTACC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	775, 964
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	5 cut(s)	166, 188, 359, 798, 854
MaeIII	GTNAC	2 cut(s)	311, 545
MalI	GATC	2 cut(s)	777, 966
MboI	GATC	2 cut(s)	775, 964
MboII	GAAGA	3 cut(s)	219, 418, 719
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	759
MluCI	AATT	6 cut(s)	148, 261, 397, 669, 837, 946
MlyI	GAGTC	2 cut(s)	105, 670
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	810, 882
MspR9I	CCNGG	2 cut(s)	276, 882
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	544
NciI	CCSGG	1 cut(s)	882
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	775, 964
NlaIII	CATG	8 cut(s)	62, 380, 519, 554, 611, 715, 771, 848
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	705
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	570
PfeI	GAWTC	8 cut(s)	23, 125, 200, 224, 386, 422, 448, 533
PflMI	CCANNNNNTGG	2 cut(s)	382, 633
PfoI	TCCNGGA	2 cut(s)	274, 880
PkrI	GCNGC	5 cut(s)	178, 181, 374, 788, 869
PleI	GAGTC	2 cut(s)	105, 670
PpsI	GAGTC	2 cut(s)	105, 670
Psp124BI	GAGCTC	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	3 cut(s)	350, 519, 624
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	336, 431, 914
RsaNI	GTAC	3 cut(s)	335, 430, 913
SacI	GAGCTC	1 cut(s)	759
SatI	GCNGC	5 cut(s)	177, 180, 373, 787, 868
Sau3AI	GATC	2 cut(s)	775, 964
Sau96I	GGNCC	3 cut(s)	350, 519, 624
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	2 cut(s)	105, 670
ScrFI	CCNGG	2 cut(s)	276, 882
SduI	GDGCHC	1 cut(s)	759
SfcI	CTRYAG	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	705
SinI	GGWCC	2 cut(s)	350, 624
Sse9I	AATT	6 cut(s)	148, 261, 397, 669, 837, 946
SsiI	CCGC	2 cut(s)	482, 695
SstI	GAGCTC	1 cut(s)	759
StyD4I	CCNGG	2 cut(s)	274, 880
TaaI	ACNGT	4 cut(s)	413, 461, 859, 878
TaqI	TCGA	6 cut(s)	26, 109, 536, 705, 759, 967
TasI	AATT	6 cut(s)	148, 261, 397, 669, 837, 946
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	8 cut(s)	23, 125, 200, 224, 386, 422, 448, 533
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	5 cut(s)	176, 179, 372, 786, 867
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	5 cut(s)	419, 514, 728, 861, 940
TspGWI	ACGGA	2 cut(s)	669, 923
TspRI	CASTG	1 cut(s)	868
Van91I	CCANNNNNTGG	2 cut(s)	382, 633
VpaK11BI	GGWCC	2 cut(s)	350, 624
XapI	RAATTY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	603
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.