Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

296001 .. 298334

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGTACCCTTGAGACCACAAGAGCTGAGCTTGGTCTGGTAGTTGTGTATTTGAATAAAGCGGAGGCGAGAGACAAGATTTGTCGAGCTATTCAATATGGTTCCAAGTTCTTGAGTGATGGCCAACCTGGCACTGCTCAAAATGTCGACAAGAACACCAGCTTGGCTAGGAAAGTTTTCCGTCTCTTCAAGTTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCCAAAGGGACTCCACTCCCGCTTGTTCTGCTCGGAAAGTCTAAAAACGCGTTGCTGTCAACGTTCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGATAGGGAACAAGGATAAACACCAGAATGAGCAATACCGTGCAAAAGTAGAGAAATCAAACGAGAGGTCATTGGCTCTGATCAAAGCAGGGATGGATGTAGTTGTTGCTTTCGGATTGCTTCAATTGGCTCCAAAGAAAGTCACTCCCCGAGTCACAGGTGCTTTCGGATTCGCCTCATCACTTATCTCTTGTTATCAGCTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

235

Amino Acids

25.91

Weight (kDa)

9.78

Isoelectric Point (pI)

23.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	13 - 225	1.7e-51	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	278
AciI	CCGC	2 cut(s)	62, 248
AclI	AACGTT	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	121
AfaI	GTAC	1 cut(s)	7
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	55, 95, 190, 596
AjnI	CCWGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	6 cut(s)	26, 31, 89, 162, 433, 673
AluI	AGCT	6 cut(s)	26, 31, 89, 162, 433, 673
Alw26I	GTCTC	3 cut(s)	8, 66, 188
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	1 cut(s)	121
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
Asp700I	GAANNNNTTC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	621
BalI	TGGCCA	1 cut(s)	123
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
BccI	CCATC	4 cut(s)	113, 385, 559, 694
BceAI	ACGGC	1 cut(s)	664
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	8, 66, 188
BfaI	CTAG	2 cut(s)	168, 302
BglI	GCCNNNNNGGC	1 cut(s)	129
BlpI	GCTNAGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	103, 603
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	32, 133
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	5 cut(s)	396, 410, 570, 574, 685
BseMII	CTCAG	2 cut(s)	18, 348
BseNI	ACTGG	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	3 cut(s)	8, 66, 188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	202, 304, 552
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	62, 248
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	19, 349
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	103, 603
BspTNI	GGTCTC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	3 cut(s)	202, 304, 552
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	27, 357
BstF5I	GGATG	5 cut(s)	396, 410, 570, 574, 685
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	3 cut(s)	205, 307, 555
BstMAI	GTCTC	3 cut(s)	8, 66, 188
BstMBI	GATC	3 cut(s)	202, 304, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 256, 439
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	5 cut(s)	396, 410, 570, 574, 685
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	296, 331
CviAII	CATG	1 cut(s)	209
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	27, 357
DpnI	GATC	3 cut(s)	204, 306, 554
DpnII	GATC	3 cut(s)	202, 304, 552
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	212
FaiI	YATR	3 cut(s)	99, 210, 374
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	208
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	5 cut(s)	397, 403, 577, 581, 672
FspBI	CTAG	2 cut(s)	168, 302
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	212
HincII	GTYRAC	2 cut(s)	148, 288
HindII	GTYRAC	2 cut(s)	148, 288
HinfI	GANTC	4 cut(s)	238, 361, 624, 642
Hpy166II	GTNNAC	2 cut(s)	148, 288
Hpy188I	TCNGA	5 cut(s)	263, 552, 587, 641, 707
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	148, 288
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	3 cut(s)	290, 352, 370
HpyCH4V	TGCA	2 cut(s)	408, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 256, 439
HpyF3I	CTNAG	2 cut(s)	27, 357
HpySE526I	ACGT	3 cut(s)	290, 352, 370
Hsp92II	CATG	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	3 cut(s)	202, 304, 552
LmnI	GCTCC	2 cut(s)	430, 607
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	2 cut(s)	168, 302
MaeII	ACGT	3 cut(s)	290, 352, 370
MaeIII	GTNAC	3 cut(s)	613, 625, 681
MalI	GATC	3 cut(s)	204, 306, 554
MboI	GATC	3 cut(s)	202, 304, 552
MboII	GAAGA	3 cut(s)	178, 197, 390
MfeI	CAATTG	1 cut(s)	596
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	3 cut(s)	309, 453, 596
MluI	ACGCGT	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	232, 633
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	4 cut(s)	58, 415, 531, 658
Mox20I	TGGCCA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	129, 256, 439
NdeII	GATC	3 cut(s)	202, 304, 552
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	2 cut(s)	103, 603
NmuCI	GTSAC	3 cut(s)	613, 625, 681
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	361, 642
PleI	GAGTC	2 cut(s)	232, 632
PpsI	GAGTC	2 cut(s)	232, 632
Psp1406I	AACGTT	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	103, 603
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	202, 304, 552
SchI	GAGTC	2 cut(s)	232, 633
ScrFI	CCNGG	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	11, 112
SmoI	CTYRAG	2 cut(s)	11, 112
Sse9I	AATT	3 cut(s)	309, 453, 596
SsiI	CCGC	2 cut(s)	62, 248
SspMI	CTAG	2 cut(s)	168, 302
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	3 cut(s)	293, 355, 373
TaqI	TCGA	2 cut(s)	85, 147
TasI	AATT	3 cut(s)	309, 453, 596
TfiI	GAWTC	2 cut(s)	361, 642
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	3 cut(s)	613, 625, 681
Tsp45I	GTSAC	3 cut(s)	613, 625, 681
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	168, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.