Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Forward (+)

20973060 .. 20976732

Gene Structure 3673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G156200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGTACACTGGATGCAACTAGAGCAGAACTTGCTCTTGCAGTTCTGTATCTGAACAAGGCTGAGGCCAGGGACAAGATTTGCAGGGCAATACAATATGGCTCAAAATTCTTGAGTAATGGAGAACCTGGAACAGCCCAAAATGTTGACAAATCAACTAGTTTGGCCCGAAAAGTTTTTCGACTTTTCAAGTTTGTCAACGATCTGCATGGTCTTATTAGTCCAACTCCTCCAGGAACTCCTCTCCCGCTTGTTCTGCTCGGAAAGTCCAAGAACGCATTGCTGTCAACTTTTCTATTTCTTGATCAAATTGTCTGGCTTGGTAGAACAGGTATCTATAAGAACAAAGAGCGTGCTGATCTAATTGGCCGGATCTCTCTTTTCTGTTGGATGGGTTCCTCAGTTTGCACTACTTTGGTTGAGATTGGGGAGATAGGAAGGCTTTCTGGACAACTTAAAAAGTTGGAGAAGGATCTGAAGAATAGTGATAAGTATCAAAACGAACAATACCGTGCTAAACTCAAAAAATCAAATGAGAGGTCACTAGCCCTGGTTAAAGCAGCCATGGATACAGTGGTAGCAGCTGGGTTGCTTCAGTTGGCACCTAAGAAAATTACCCCTCGTGTCACTGGAGCCTTGGGATTTACTACCTCTCTGATATCCTGTTATCAGTTGCTTCCAGCTCCAGCGAAGTCCAAGACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

236

Amino Acids

25.7

Weight (kDa)

9.87

Isoelectric Point (pI)

21.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	601
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	380, 480
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	497, 578
AfaI	GTAC	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	190
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	4 cut(s)	68, 127, 232, 549
AluBI	AGCT	2 cut(s)	584, 683
AluI	AGCT	2 cut(s)	584, 683
AlwI	GGATC	2 cut(s)	380, 480
AoxI	GGCC	3 cut(s)	66, 165, 367
ApeKI	GCWGC	2 cut(s)	560, 581
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
Asp700I	GAANNNNTTC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	166
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BanI	GGYRCC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	572, 593
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	4 cut(s)	70, 129, 234, 551
BciVI	GTATCC	1 cut(s)	562
BclI	TGATCA	1 cut(s)	304
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	3 cut(s)	21, 159, 545
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	2 cut(s)	561, 582
BlsI	GCNGC	2 cut(s)	562, 583
Bme1390I	CCNGG	4 cut(s)	70, 129, 234, 551
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	397, 603, 634
BmrFI	CCNGG	4 cut(s)	70, 129, 234, 551
BmsI	GCATC	1 cut(s)	4
BpmI	CTGGAG	3 cut(s)	216, 651, 669
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	69, 549, 564, 636
Bse1I	ACTGG	2 cut(s)	15, 634
Bse3DI	GCAATG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	4 cut(s)	70, 129, 234, 551
BseDI	CCNNGG	4 cut(s)	69, 549, 564, 636
BseGI	GGATG	2 cut(s)	19, 396
BseJI	GATNNNNATC	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	54, 414
BseNI	ACTGG	2 cut(s)	15, 634
BseRI	GAGGAG	2 cut(s)	219, 231
BseXI	GCAGC	2 cut(s)	572, 593
BseYI	CCCAGC	1 cut(s)	584
BshFI	GGCC	3 cut(s)	68, 167, 369
BshNI	GGYRCC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	68, 167, 369
Bsp143I	GATC	5 cut(s)	202, 304, 358, 372, 472
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	68, 167, 369
BspCNI	CTCAG	2 cut(s)	55, 413
BspLI	GGNNCC	3 cut(s)	397, 603, 634
BspPI	GGATC	2 cut(s)	380, 480
BspT107I	GGYRCC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	15, 634
BssECI	CCNNGG	4 cut(s)	69, 549, 564, 636
BssMI	GATC	5 cut(s)	202, 304, 358, 372, 472
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	2 cut(s)	564, 636
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	4 cut(s)	70, 129, 234, 551
Bst4CI	ACNGT	2 cut(s)	512, 574
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	63, 400, 606
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	2 cut(s)	19, 396
BstKTI	GATC	5 cut(s)	205, 307, 361, 375, 475
BstMBI	GATC	5 cut(s)	202, 304, 358, 372, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 256
BstNI	CCWGG	4 cut(s)	70, 129, 234, 551
BstSCI	CCNGG	4 cut(s)	68, 127, 232, 549
BstV1I	GCAGC	2 cut(s)	572, 593
BstX2I	RGATCY	2 cut(s)	372, 472
BstYI	RGATCY	2 cut(s)	372, 472
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	3 cut(s)	68, 167, 369
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	19, 396
BtsIMutI	CAGTG	3 cut(s)	8, 579, 627
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	209, 565
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	63, 400, 606
DpnI	GATC	5 cut(s)	204, 306, 360, 374, 474
DpnII	GATC	5 cut(s)	202, 304, 358, 372, 472
EaeI	YGGCCR	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	564, 636
Eco32I	GATATC	1 cut(s)	660
Eco57I	CTGAAG	2 cut(s)	497, 578
EcoRII	CCWGG	4 cut(s)	68, 127, 232, 549
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	2 cut(s)	564, 636
ErhI	CCWWGG	2 cut(s)	564, 636
FaeI	CATG	2 cut(s)	212, 568
FaiI	YATR	4 cut(s)	99, 210, 339, 566
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	208, 564
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	561, 582
FokI	GGATG	2 cut(s)	26, 403
Fsp4HI	GCNGC	2 cut(s)	561, 582
FspBI	CTAG	3 cut(s)	21, 159, 545
GluI	GCNGC	2 cut(s)	561, 582
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	3 cut(s)	216, 651, 669
HaeIII	GGCC	3 cut(s)	68, 167, 369
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	2 cut(s)	212, 568
HincII	GTYRAC	3 cut(s)	148, 199, 288
HindII	GTYRAC	3 cut(s)	148, 199, 288
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	4 cut(s)	8, 148, 199, 288
Hpy188I	TCNGA	4 cut(s)	54, 263, 477, 657
Hpy188III	TCNNGA	3 cut(s)	112, 302, 447
Hpy8I	GTNNAC	4 cut(s)	8, 148, 199, 288
HpyAV	CCTTC	2 cut(s)	432, 463
HpyCH4III	ACNGT	2 cut(s)	512, 574
HpyCH4V	TGCA	5 cut(s)	17, 41, 84, 208, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 256
HpyF3I	CTNAG	3 cut(s)	63, 400, 606
Hsp92II	CATG	2 cut(s)	212, 568
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	202, 304, 358, 372, 472
LmnI	GCTCC	2 cut(s)	632, 688
Lsp1109I	GCAGC	2 cut(s)	572, 593
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	21, 159, 545
MaeIII	GTNAC	2 cut(s)	540, 625
MalI	GATC	5 cut(s)	204, 306, 360, 374, 474
MboI	GATC	5 cut(s)	202, 304, 358, 372, 472
MboII	GAAGA	1 cut(s)	490
MflI	RGATCY	2 cut(s)	372, 472
MluCI	AATT	4 cut(s)	107, 309, 363, 612
MmeI	TCCRAC	3 cut(s)	248, 368, 444
MnlI	CCTC	7 cut(s)	58, 240, 252, 409, 531, 630, 661
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	2 cut(s)	456, 555
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	4 cut(s)	70, 129, 234, 551
MvaI	CCWGG	4 cut(s)	70, 129, 234, 551
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 256
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	5 cut(s)	202, 304, 358, 372, 472
NlaIII	CATG	2 cut(s)	212, 568
NlaIV	GGNNCC	3 cut(s)	397, 603, 634
NmuCI	GTSAC	2 cut(s)	540, 625
PdmI	GAANNNNTTC	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	562, 583
Psp6I	CCWGG	4 cut(s)	68, 127, 232, 549
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	4 cut(s)	68, 127, 232, 549
PspN4I	GGNNCC	3 cut(s)	397, 603, 634
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	372, 472
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	456, 555
SatI	GCNGC	2 cut(s)	561, 582
Sau3AI	GATC	5 cut(s)	202, 304, 358, 372, 472
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	4 cut(s)	70, 129, 234, 551
SetI	ASST	7 cut(s)	130, 334, 542, 586, 607, 653, 685
SfaNI	GCATC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	4 cut(s)	107, 309, 363, 612
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	3 cut(s)	21, 159, 545
StyD4I	CCNGG	4 cut(s)	68, 127, 232, 549
StyI	CCWWGG	2 cut(s)	564, 636
TaaI	ACNGT	2 cut(s)	512, 574
TaqI	TCGA	1 cut(s)	181
TasI	AATT	4 cut(s)	107, 309, 363, 612
TatI	WGTACW	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	456, 555
Tru9I	TTAA	2 cut(s)	456, 555
TscAI	CASTG	3 cut(s)	15, 579, 634
TseFI	GTSAC	2 cut(s)	540, 625
TseI	GCWGC	2 cut(s)	560, 581
Tsp45I	GTSAC	2 cut(s)	540, 625
TspRI	CASTG	3 cut(s)	15, 579, 634
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	3 cut(s)	21, 159, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.