Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

13674165 .. 13674773

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12360.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGCTCCTCAATATGTACCACTTTGGTTGAGATTGGGGAGATAGGAAGGATTTCTGGACAACTGAAGAAGTTGGAGAAGGATCTGAAGAACAGTGAGAAGTATCATAATGAACAATACCGTGCTAAACTCAAAAAATCAAATGAGAGGTCACTGGCCCTGGTTAAAGCAGCGTTGGATACAGTGGTAGCAGTTGGGTTGCTTCAGTTGGCTCCTAAGAAAGTTACTTCACGTGTTACTGGAGCCTTGGGATTTACGACTTCTCTGATCTCATGTTATCAGTTGCTTCCAGCACCAGCAAAGTCCAAGGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

106

Amino Acids

11.29

Weight (kDa)

9.81

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	90
AcuI	CTGAAG	3 cut(s)	86, 107, 188
AcvI	CACGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	159
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	170, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BanII	GRGCYC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	171, 312
BlsI	GCNGC	2 cut(s)	172, 313
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	7, 213, 244
BmrFI	CCNGG	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	159, 246, 306
Bse1I	ACTGG	2 cut(s)	159, 244
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	159, 246, 306
BseNI	ACTGG	2 cut(s)	159, 244
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	82, 267
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	3 cut(s)	7, 213, 244
BspPI	GGATC	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	159, 244
BssECI	CCNNGG	3 cut(s)	159, 246, 306
BssMI	GATC	2 cut(s)	82, 267
BssT1I	CCWWGG	2 cut(s)	246, 306
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	95, 122, 184
BstBAI	YACGTR	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	85, 270
BstMBI	GATC	2 cut(s)	82, 267
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	158
BtsIMutI	CAGTG	3 cut(s)	100, 152, 189
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	1 cut(s)	273
CviJI	RGCY	5 cut(s)	6, 158, 212, 245, 314
CviKI_1	RGCY	5 cut(s)	6, 158, 212, 245, 314
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	84, 269
DpnII	GATC	2 cut(s)	82, 267
Eco130I	CCWWGG	2 cut(s)	246, 306
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	3 cut(s)	86, 107, 188
Eco72I	CACGTG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	246, 306
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	246, 306
FaeI	CATG	1 cut(s)	276
FaiI	YATR	3 cut(s)	16, 108, 274
FatI	CATG	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	171, 312
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	171, 312
GluI	GCNGC	2 cut(s)	171, 312
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	276
Hpy188I	TCNGA	2 cut(s)	87, 267
Hpy188III	TCNNGA	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	42, 73
HpyCH4III	ACNGT	3 cut(s)	95, 122, 184
HpyCH4IV	ACGT	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	82, 267
LmnI	GCTCC	3 cut(s)	11, 217, 242
LpnPI	CCDG	7 cut(s)	42, 140, 146, 173, 225, 303, 309
Lsp1109I	GCAGC	1 cut(s)	182
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	3 cut(s)	150, 223, 235
MalI	GATC	2 cut(s)	84, 269
MboI	GATC	2 cut(s)	82, 267
MboII	GAAGA	2 cut(s)	79, 100
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	54, 156
MnlI	CCTC	2 cut(s)	19, 141
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	82, 267
NlaIII	CATG	1 cut(s)	276
NlaIV	GGNNCC	3 cut(s)	7, 213, 244
NmuCI	GTSAC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	172, 313
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	7, 213, 244
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	171, 312
Sau3AI	GATC	2 cut(s)	82, 267
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	2 cut(s)	152, 235
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	246, 306
TaaI	ACNGT	3 cut(s)	95, 122, 184
TaiI	ACGT	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	100, 159, 189
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	2 cut(s)	170, 311
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	3 cut(s)	100, 159, 189
XmnI	GAANNNNTTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.